mRNA_H-elongata_contig197776.5529.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197776.5529.1
Unique NamemRNA_H-elongata_contig197776.5529.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4K4A0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K4A0_9AGAM)

HSP 1 Score: 115 bits (289), Expect = 6.650e-30
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:   51 QRQYITDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 187          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A6G0W6P6_9STRA (Integrase catalytic domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W6P6_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.550e-29
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTKTSII--PFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTK-LSAWVDADYGTCPDTRRSVSG 408
            Q +Y +T+ ERF +  ++ +  PF +  K  SKS    T  ++  M   PYR +VG+ M+ A  TRPD++F   QL++F DNPGP HWRAA++AL+YL  T   G+  GG        LSA+VDADY  CPDTRR VSG
Sbjct:  582 QTRYCETVVERFDMASSNPVHTPFESS-KTLSKSQCATTPEDISFMASKPYRSLVGSPMYLAMGTRPDLAFPLQQLSQFLDNPGPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSG 719          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A6G0W780_9STRA (Integrase catalytic domain-containing protein n=3 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W780_9STRA)

HSP 1 Score: 120 bits (300), Expect = 7.980e-29
Identity = 64/139 (46.04%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTKTSII--PFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTK-LSAWVDADYGTCPDTRRSVSG 408
            Q +Y +T+ ERF +  ++ +  PF +  K  SKS    T  ++  M   PYR +VG+LM+ A  TRPD++F   QL++F DNP P HWRAA++AL+YL  T   G+  GG        LSA+VDADY  CPDTRR VSG
Sbjct: 1726 QTRYCETVVERFDMASSNPVHTPFESS-KTLSKSQCATTPEDISFMASKPYRSLVGSLMYLAMGTRPDLAFPLQQLSQFLDNPDPAHWRAAKRALRYLNGTRSRGLLLGGSDSVHNPFLSAYVDADYANCPDTRRCVSG 1863          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4LBP1_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4LBP1_9AGAM)

HSP 1 Score: 116 bits (290), Expect = 1.410e-28
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP+HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:  191 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 327          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4L7S0_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4L7S0_9AGAM)

HSP 1 Score: 115 bits (287), Expect = 2.190e-28
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:   51 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 187          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4K791_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4K791_9AGAM)

HSP 1 Score: 115 bits (287), Expect = 1.230e-27
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:  291 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 427          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4V3X9G3_9AGAM (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4V3X9G3_9AGAM)

HSP 1 Score: 116 bits (290), Expect = 1.670e-27
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP+HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:  672 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 808          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4KQD1_9AGAM (DOMON domain-containing protein n=1 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KQD1_9AGAM)

HSP 1 Score: 115 bits (288), Expect = 1.920e-27
Identity = 59/137 (43.07%), Postives = 85/137 (62.04%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP+HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:  268 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPSHWKAAKHLCRYLQGTKDMKLTYTPDPHAPELFTTFSDADHGGDEDNRRSTSG 404          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0)

HSP 1 Score: 108 bits (271), Expect = 2.830e-27
Identity = 52/104 (50.00%), Postives = 70/104 (67.31%), Query Frame = 1
Query:  100 SPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTK-LSAWVDADYGTCPDTRRSVSG 408
            SPQTD EVEEM QIPY+E VGAL++ +T TRPDIS+A  Q+AKFN NPG  HW+A ++  +YL  T + G+ +   P G  + +  + DAD+   PD + S SG
Sbjct:    2 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDPDDQTSTSG 105          
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Match: A0A4S4KQ60_9AGAM (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phellinidium pouzarii TaxID=167371 RepID=A0A4S4KQ60_9AGAM)

HSP 1 Score: 115 bits (287), Expect = 3.650e-27
Identity = 59/137 (43.07%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 QHQYIQTIAERFGVTK-TSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYREIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTLDLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG 408
            Q QYI  I ERF ++  T++   +  G   SK+ +P+   E+  M  +PYR++VGALM+ A  TRPDIS+A   LA+F+ NPGP HW+AA+   +YL  T D+ +TY  +P      + + DAD+G   D RRS SG
Sbjct:  357 QRQYIIDILERFEMSNCTTVTTPLPDGHRLSKAMAPKDAEEIAFMKTVPYRQLVGALMYLAVATRPDISYAVGVLARFSSNPGPGHWKAAKHLCRYLQGTKDMKLTYAPDPHAPELFTTFSDADHGGDEDNRRSTSG 493          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197776.5529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4S4K4A0_9AGAM6.650e-3043.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0W6P6_9STRA7.550e-2946.04Integrase catalytic domain-containing protein n=1 ... [more]
A0A6G0W780_9STRA7.980e-2946.04Integrase catalytic domain-containing protein n=3 ... [more]
A0A4S4LBP1_9AGAM1.410e-2843.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4L7S0_9AGAM2.190e-2843.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4S4K791_9AGAM1.230e-2743.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A4V3X9G3_9AGAM1.670e-2743.07Integrase catalytic domain-containing protein (Fra... [more]
A0A4S4KQD1_9AGAM1.920e-2743.07DOMON domain-containing protein n=1 Tax=Phellinidi... [more]
UPI001E1BB9B02.830e-2750.00secreted RxLR effector protein 161-like n=1 Tax=Da... [more]
A0A4S4KQ60_9AGAM3.650e-2743.07Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197776contigH-elongata_contig197776:578..985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.5
Seed ortholog evalue1.9e-23
Seed eggNOG ortholog67593.Physo133076
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size408
Cds size408
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.80972-CDS-H-elongata_contig197776:577..9851622930117.80972-CDS-H-elongata_contig197776:577..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197776 578..985 -
1691679287.490362-CDS-H-elongata_contig197776:577..9851691679287.490362-CDS-H-elongata_contig197776:577..985Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197776 578..985 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197776.5529.1prot_H-elongata_contig197776.5529.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197776 578..985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197776.5529.1

>prot_H-elongata_contig197776.5529.1 ID=prot_H-elongata_contig197776.5529.1|Name=mRNA_H-elongata_contig197776.5529.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=136bp
QHQYIQTIAERFGVTKTSIIPFVAGGKAFSKSDSPQTDAEVEEMHQIPYR
EIVGALMWAATMTRPDISFASHQLAKFNDNPGPTHWRAAQKALQYLWRTL
DLGVTYGGEPKGGTKLSAWVDADYGTCPDTRRSVSG
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mRNA from alignment at H-elongata_contig197776:578..985-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197776.5529.1 ID=mRNA_H-elongata_contig197776.5529.1|Name=mRNA_H-elongata_contig197776.5529.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=408bp|location=Sequence derived from alignment at H-elongata_contig197776:578..985- (Himanthalia elongata Himel1 dioecious)
CAGCATCAGTACATACAGACTATAGCGGAACGTTTTGGCGTGACGAAGAC CAGCATCATCCCTTTCGTGGCAGGAGGAAAAGCCTTTTCGAAATCAGACA GCCCGCAAACGGACGCCGAGGTTGAAGAAATGCACCAGATTCCCTACCGA GAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGACCCGATAT TTCATTCGCTTCGCACCAACTGGCGAAATTCAACGACAACCCGGGACCGA CACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCTG GACCTCGGGGTCACCTACGGAGGTGAACCGAAGGGGGGGACCAAGTTATC AGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCGTCGCTCAG TGTCGGGG
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Coding sequence (CDS) from alignment at H-elongata_contig197776:578..985-

>mRNA_H-elongata_contig197776.5529.1 ID=mRNA_H-elongata_contig197776.5529.1|Name=mRNA_H-elongata_contig197776.5529.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=816bp|location=Sequence derived from alignment at H-elongata_contig197776:578..985- (Himanthalia elongata Himel1 dioecious)
CAGCATCAGTACATACAGACTATAGCGGAACGTTTTGGCGTGACGAAGAC
CAGCATCATCCCTTTCGTGGCAGGAGGAAAAGCCTTTTCGAAATCAGACA
GCCCGCAAACGGACGCCGAGGTTGAAGAAATGCACCAGATTCCCTACCGA
GAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGACCCGATAT
TTCATTCGCTTCGCACCAACTGGCGAAATTCAACGACAACCCGGGACCGA
CACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGCGCACTCTG
GACCTCGGGGTCACCTACGGAGGTGAACCGAAGGGGGGGACCAAGTTATC
AGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCGTCGCTCAG
TGTCGGGGCAGCATCAGTACATACAGACTATAGCGGAACGTTTTGGCGTG
ACGAAGACCAGCATCATCCCTTTCGTGGCAGGAGGAAAAGCCTTTTCGAA
ATCAGACAGCCCGCAAACGGACGCCGAGGTTGAAGAAATGCACCAGATTC
CCTACCGAGAAATCGTTGGGGCCCTAATGTGGGCAGCGACGATGACCAGA
CCCGATATTTCATTCGCTTCGCACCAACTGGCGAAATTCAACGACAACCC
GGGACCGACACACTGGAGGGCAGCCCAGAAAGCGCTGCAATATTTATGGC
GCACTCTGGACCTCGGGGTCACCTACGGAGGTGAACCGAAGGGGGGGACC
AAGTTATCAGCGTGGGTCGACGCAGACTACGGCACCTGCCCGGACACGCG
TCGCTCAGTGTCGGGG
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