mRNA_H-elongata_contig197756.5528.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197756.5528.1
Unique NamemRNA_H-elongata_contig197756.5528.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUR5_SARFS (Aspartate aminotransferase n=1 Tax=Sargassum fusiforme TaxID=590727 RepID=A0A097IUR5_SARFS)

HSP 1 Score: 71.2 bits (173), Expect = 1.590e-13
Identity = 32/46 (69.57%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVS 138
            ALNQYS+P GLK LQDAVCA+YN+ YGL+EG  A+RAI P+NVL++
Sbjct:   75 ALNQYSMPTGLKSLQDAVCAYYNRFYGLREGQ-AKRAIAPENVLIT 119
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: D7FQ50_ECTSI (Aspartate Aminotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ50_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.500e-13
Identity = 35/48 (72.92%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            ALNQYSLP GLK LQ AV  +YNKCYGLQEG    RAIGP+NVLV+ G
Sbjct:   73 ALNQYSLPPGLKSLQSAVSTYYNKCYGLQEGA-TNRAIGPENVLVTVG 119
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUU4_9PHAE (Aspartate aminotransferase n=7 Tax=Sargassum TaxID=3015 RepID=A0A097IUU4_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 3.470e-13
Identity = 33/48 (68.75%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:    1 ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            ALNQYS+P GLK LQDAVCA+YN  YGL+EG  A+RAI P+NVL++ G
Sbjct:   75 ALNQYSMPAGLKSLQDAVCAYYNNVYGLREGQ-AKRAITPENVLITVG 121
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUT3_UNDPI (Aspartate aminotransferase n=1 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUT3_UNDPI)

HSP 1 Score: 71.2 bits (173), Expect = 3.490e-13
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    4 LNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            LNQY+LP GL  L+ A+CA+YNKCYGLQEG   +RAI P+NV+V+ G
Sbjct:   80 LNQYTLPSGLGSLKSAICAYYNKCYGLQEGASRKRAISPENVVVTVG 126
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUS9_SCYLO (Aspartate aminotransferase n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUS9_SCYLO)

HSP 1 Score: 70.5 bits (171), Expect = 6.460e-13
Identity = 33/48 (68.75%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    1 ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            ALNQYSLP GLK LQ AV  +YNK YGL+EG  A +AIGP+NVLV+ G
Sbjct:   74 ALNQYSLPLGLKSLQSAVSTYYNKSYGLKEGATANKAIGPENVLVTIG 121
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUU6_9PHAE (Aspartate aminotransferase n=1 Tax=Saccharina sculpera TaxID=416830 RepID=A0A097IUU6_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 7.230e-11
Identity = 25/47 (53.19%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    4 LNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            +NQY+LP GL  L+ A+CA+YNKCYGL  G   ++AI P+NV+++ G
Sbjct:   84 INQYTLPAGLGSLRSAICAYYNKCYGLHGGGGGKKAIAPENVMITVG 130
[Close]
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Match: A0A097IUQ5_9PHAE (Aspartate aminotransferase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUQ5_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 1.850e-10
Identity = 29/48 (60.42%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    1 ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDG 144
            A+NQYS+P GLK LQ++VC +YNK Y L+EG  A+RAIG +NVL++ G
Sbjct:   77 AMNQYSMPPGLKSLQESVCTYYNKRYQLEEGA-AKRAIGSENVLITIG 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197756.5528.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A097IUR5_SARFS1.590e-1369.57Aspartate aminotransferase n=1 Tax=Sargassum fusif... [more]
D7FQ50_ECTSI2.500e-1372.92Aspartate Aminotransferase n=1 Tax=Ectocarpus sili... [more]
A0A097IUU4_9PHAE3.470e-1368.75Aspartate aminotransferase n=7 Tax=Sargassum TaxID... [more]
A0A097IUT3_UNDPI3.490e-1363.83Aspartate aminotransferase n=1 Tax=Undaria pinnati... [more]
A0A097IUS9_SCYLO6.460e-1368.75Aspartate aminotransferase n=3 Tax=Scytosiphonacea... [more]
A0A097IUU6_9PHAE7.230e-1153.19Aspartate aminotransferase n=1 Tax=Saccharina scul... [more]
A0A097IUQ5_9PHAE1.850e-1060.42Aspartate aminotransferase n=1 Tax=Desmarestia vir... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197756contigH-elongata_contig197756:228..380 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.6
Seed ortholog evalue1.2e-10
Seed eggNOG ortholog2880.D7FQ50
GOsGO:0003674,GO:0003824,GO:0005488,GO:0008144,GO:0008483,GO:0010326,GO:0016740,GO:0016769,GO:0019842,GO:0030170,GO:0036094,GO:0043167,GO:0043168,GO:0048037,GO:0050662,GO:0070279,GO:0097159,GO:1901363
EggNOG free text desc.transferase activity, transferring nitrogenous groups
EggNOG OGsCOG0436@1,KOG0257@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.7655787-CDS-H-elongata_contig197756:227..3801622930117.7655787-CDS-H-elongata_contig197756:227..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197756 228..380 -
1691679287.4799497-CDS-H-elongata_contig197756:227..3801691679287.4799497-CDS-H-elongata_contig197756:227..380Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197756 228..380 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197756.5528.1prot_H-elongata_contig197756.5528.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197756 228..380 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197756.5528.1

>prot_H-elongata_contig197756.5528.1 ID=prot_H-elongata_contig197756.5528.1|Name=mRNA_H-elongata_contig197756.5528.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
ALNQYSLPRGLKPLQDAVCAFYNKCYGLQEGHHARRAIGPQNVLVSDGGV
*
back to top

mRNA from alignment at H-elongata_contig197756:228..380-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197756.5528.1 ID=mRNA_H-elongata_contig197756.5528.1|Name=mRNA_H-elongata_contig197756.5528.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig197756:228..380- (Himanthalia elongata Himel1 dioecious)
GCATTAAACCAGTACAGCTTGCCGCGCGGGCTCAAGCCCCTCCAGGACGC
CGTTTGCGCGTTCTACAACAAGTGCTACGGGTTACAAGAAGGCCACCACG
CGAGGAGGGCGATCGGCCCCCAGAACGTCCTGGTGAGCGATGGTGGCGTC
TGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig197756:228..380-

>mRNA_H-elongata_contig197756.5528.1 ID=mRNA_H-elongata_contig197756.5528.1|Name=mRNA_H-elongata_contig197756.5528.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig197756:228..380- (Himanthalia elongata Himel1 dioecious)
GCATTAAACCAGTACAGCTTGCCGCGCGGGCTCAAGCCCCTCCAGGACGC
CGTTTGCGCGTTCTACAACAAGTGCTACGGGTTACAAGAAGGCCACCACG
CGAGGAGGGCGATCGGCCCCCAGAACGTCCTGGTGAGCGATGGTGGCGTC
TGAGCATTAAACCAGTACAGCTTGCCGCGCGGGCTCAAGCCCCTCCAGGA
CGCCGTTTGCGCGTTCTACAACAAGTGCTACGGGTTACAAGAAGGCCACC
ACGCGAGGAGGGCGATCGGCCCCCAGAACGTCCTGGTGAGCGATGGTGGC
GTCTGA
back to top