mRNA_H-elongata_contig197705.5524.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197705.5524.1
Unique NamemRNA_H-elongata_contig197705.5524.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A6H5KJ07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ07_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.660e-19
Identity = 40/45 (88.89%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   13 KLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            KLLYVGDHMFADILRSKRTLGWRTCLIVPEL  EM A+RENR+LR
Sbjct:   54 KLLYVGDHMFADILRSKRTLGWRTCLIVPELESEMNANRENRDLR 98
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: D7FMF3_ECTSI (5'-nucleotidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMF3_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.880e-18
Identity = 39/45 (86.67%), Postives = 43/45 (95.56%), Query Frame = 1 
Query:   13 KLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            +LLYVGDHMFADILRSKRTLGWRTCLIVPEL  EM+A+RENR+LR
Sbjct:  442 QLLYVGDHMFADILRSKRTLGWRTCLIVPELENEMSANRENRDLR 486
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A6H5JY87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY87_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 4.800e-18
Identity = 39/45 (86.67%), Postives = 42/45 (93.33%), Query Frame = 1 
Query:   13 KLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            +LLYVGDHMFADILRSKRTLGWRTCLIVPEL  EM A+RENR+LR
Sbjct:  826 QLLYVGDHMFADILRSKRTLGWRTCLIVPELESEMNANRENRDLR 870
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A835Z4H4_9STRA (5'-nucleotidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4H4_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 6.990e-16
Identity = 35/45 (77.78%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:   13 KLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            +LLYVGDHMF+DILRSKRTLGWRTCLIVPEL  E+A H  + ELR
Sbjct:  337 QLLYVGDHMFSDILRSKRTLGWRTCLIVPELENEIATHNRHSELR 381
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A7S2WQY2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WQY2_9STRA)

HSP 1 Score: 69.7 bits (169), Expect = 6.240e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 1 
Query:    4 AYSKLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHR 129
            A  +LLYVGDHM++DILRSKRTLGWRTCL++PEL  EM  +R
Sbjct:   25 AGERLLYVGDHMYSDILRSKRTLGWRTCLVIPELEVEMNTYR 66
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A7S2EHS9_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHS9_TRICV)

HSP 1 Score: 71.2 bits (173), Expect = 1.370e-13
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 AYSKLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            A  +++YVGDH++AD+LRSKRTLGWR+C IVPELA EM   RE   LR
Sbjct:   73 AGEEIMYVGDHLYADVLRSKRTLGWRSCFIVPELAEEMRVFREQLPLR 120
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A7S1ZFY4_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZFY4_TRICV)

HSP 1 Score: 71.2 bits (173), Expect = 3.610e-13
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:    4 AYSKLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            A  +++YVGDH++AD+LRSKRTLGWR+C IVPELA EM   RE   LR
Sbjct:  447 AGEEIMYVGDHLYADVLRSKRTLGWRSCFIVPELAEEMRVFREQLPLR 494
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A7S0SZA1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SZA1_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.790e-13
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   13 KLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEM-AAHRENR 138
            ++LYVGDHMFADILRSKRTLGWRTCLI+PEL  E+  A RE++
Sbjct:  246 RILYVGDHMFADILRSKRTLGWRTCLIIPELEHELETAQRESK 288
[Close]
BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: W7T4C7_9STRA (Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7T4C7_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 4.930e-13
Identity = 29/36 (80.56%), Postives = 36/36 (100.00%), Query Frame = 1 
Query:   16 LLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAA 123
            +LYVGDHM++DILRSKR+LGWRTCL++PELAGE+AA
Sbjct:  388 VLYVGDHMYSDILRSKRSLGWRTCLVIPELAGEVAA 423
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BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Match: A0A6U3R2E5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3R2E5_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.260e-12
Identity = 30/48 (62.50%), Postives = 37/48 (77.08%), Query Frame = 1 
Query:    4 AYSKLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELR 147
            A  ++LYVGDH++AD+LRSKRTLGWR+  IVPEL+ EM    EN  LR
Sbjct:   91 AGEEILYVGDHLYADVLRSKRTLGWRSAFIVPELSDEMRVFSENVPLR 138
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197705.5524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KJ07_9PHAE1.660e-1988.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMF3_ECTSI1.880e-1886.675'-nucleotidase n=1 Tax=Ectocarpus siliculosus Tax... [more]
A0A6H5JY87_9PHAE4.800e-1886.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z4H4_9STRA6.990e-1677.785'-nucleotidase n=1 Tax=Tribonema minus TaxID=3033... [more]
A0A7S2WQY2_9STRA6.240e-1471.43Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S2EHS9_TRICV1.370e-1364.58Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1ZFY4_TRICV3.610e-1364.58Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S0SZA1_9STRA3.790e-1374.42Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
W7T4C7_9STRA4.930e-1380.56Imp-gmp specific 5 nucleotidase n=3 Tax=Monodopsid... [more]
A0A6U3R2E5_9STRA4.260e-1262.50Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197705contigH-elongata_contig197705:657..809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue2.7e-15
Seed eggNOG ortholog2880.D7FMF3
EggNOG free text desc.5'-nucleotidase activity
EggNOG OGsKOG2469@1,KOG2469@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size153
Cds size153
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.5537367-CDS-H-elongata_contig197705:656..8091622930117.5537367-CDS-H-elongata_contig197705:656..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197705 657..809 +
1691679287.3976457-CDS-H-elongata_contig197705:656..8091691679287.3976457-CDS-H-elongata_contig197705:656..809Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197705 657..809 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197705.5524.1prot_H-elongata_contig197705.5524.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197705 657..809 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197705.5524.1

>prot_H-elongata_contig197705.5524.1 ID=prot_H-elongata_contig197705.5524.1|Name=mRNA_H-elongata_contig197705.5524.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=51bp
MAYSKLLYVGDHMFADILRSKRTLGWRTCLIVPELAGEMAAHRENRELRY
*
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mRNA from alignment at H-elongata_contig197705:657..809+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197705.5524.1 ID=mRNA_H-elongata_contig197705.5524.1|Name=mRNA_H-elongata_contig197705.5524.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=153bp|location=Sequence derived from alignment at H-elongata_contig197705:657..809+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTATTCAAAGCTTTTGTACGTTGGAGACCACATGTTTGCGGACAT
CTTGAGGTCCAAGCGGACGCTGGGGTGGAGGACGTGTTTGATCGTTCCCG
AGCTGGCGGGAGAAATGGCGGCCCATCGGGAAAATCGGGAGCTAAGGTAT
TGA
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Coding sequence (CDS) from alignment at H-elongata_contig197705:657..809+

>mRNA_H-elongata_contig197705.5524.1 ID=mRNA_H-elongata_contig197705.5524.1|Name=mRNA_H-elongata_contig197705.5524.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=306bp|location=Sequence derived from alignment at H-elongata_contig197705:657..809+ (Himanthalia elongata Himel1 dioecious)
ATGGCCTATTCAAAGCTTTTGTACGTTGGAGACCACATGTTTGCGGACAT
CTTGAGGTCCAAGCGGACGCTGGGGTGGAGGACGTGTTTGATCGTTCCCG
AGCTGGCGGGAGAAATGGCGGCCCATCGGGAAAATCGGGAGCTAAGGTAT
TGAATGGCCTATTCAAAGCTTTTGTACGTTGGAGACCACATGTTTGCGGA
CATCTTGAGGTCCAAGCGGACGCTGGGGTGGAGGACGTGTTTGATCGTTC
CCGAGCTGGCGGGAGAAATGGCGGCCCATCGGGAAAATCGGGAGCTAAGG
TATTGA
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