mRNA_H-elongata_contig197690.5522.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197690.5522.1
Unique NamemRNA_H-elongata_contig197690.5522.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197690.5522.1 vs. uniprot
Match: D8LNS0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNS0_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 6.570e-43
Identity = 77/102 (75.49%), Postives = 90/102 (88.24%), Query Frame = 1 
Query:   28 VDTLCSALDRNKEGLVMTALKERGLEETTVLGQWWCKGLFVGGKACMYQNENDLAVACLKKGSKLAKSAALTRLRNEINQELEKAAKRLANQTKKAQKMWTK 333
            VDTLCSAL+RN++G VM  LKERG+ ETT+LGQWWCKGLF+GGKAC+YQ+EN+ AV  LKKGS+LAK AAL +LR EIN ELEKA KRLA+QTKKAQKMW+K
Sbjct:  264 VDTLCSALERNRDGKVMKELKERGVGETTILGQWWCKGLFLGGKACLYQSENEEAVNYLKKGSRLAKPAALAKLRAEINNELEKATKRLASQTKKAQKMWSK 365
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197690.5522.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNS0_ECTSI6.570e-4375.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197690contigH-elongata_contig197690:126..999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score157.9
Seed ortholog evalue2.7e-36
Seed eggNOG ortholog2880.D8LNS0
EggNOG OGs2E2VZ@1,2SA27@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFKBP and TPR domain protein
Ec32 orthologEc-08_006070.1
Exons2
Model size333
Cds size333
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.3404493-CDS-H-elongata_contig197690:125..2391622930117.3404493-CDS-H-elongata_contig197690:125..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197690 126..239 -
1691679287.2924914-CDS-H-elongata_contig197690:125..2391691679287.2924914-CDS-H-elongata_contig197690:125..239Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197690 126..239 -
1622930117.35761-CDS-H-elongata_contig197690:780..9991622930117.35761-CDS-H-elongata_contig197690:780..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197690 781..999 -
1691679287.3011718-CDS-H-elongata_contig197690:780..9991691679287.3011718-CDS-H-elongata_contig197690:780..999Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197690 781..999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197690.5522.1prot_H-elongata_contig197690.5522.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197690 126..999 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197690.5522.1

>prot_H-elongata_contig197690.5522.1 ID=prot_H-elongata_contig197690.5522.1|Name=mRNA_H-elongata_contig197690.5522.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=111bp
MVTCFRDGQVDTLCSALDRNKEGLVMTALKERGLEETTVLGQWWCKGLFV
GGKACMYQNENDLAVACLKKGSKLAKSAALTRLRNEINQELEKAAKRLAN
QTKKAQKMWTK
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mRNA from alignment at H-elongata_contig197690:126..999-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197690.5522.1 ID=mRNA_H-elongata_contig197690.5522.1|Name=mRNA_H-elongata_contig197690.5522.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=874bp|location=Sequence derived from alignment at H-elongata_contig197690:126..999- (Himanthalia elongata Himel1 dioecious)
ATGGTGACATGCTTTCGTGACGGTCAGGTTGACACGCTCTGTAGTGCCTT
AGATCGAAACAAGGAAGGCTTGGTGATGACTGCCTTAAAGGAACGAGGCC
TGGAGGAGACGACGGTGCTGGGTCAATGGTGGTGCAAGGGGTTGTTTGTG
GGCGGGAAAGCTTGCATGTACCAGAATGAGAATGATCTCGCTGTTGCCTG
CCTCAAGAAGGGGAGCAAGGTACGACCTCTTGTGGCACACCACCATTGGC
ATCATTGAGTTTTGGGAGTGGAACGCGCAGCTCGCTTAGTAGCCTCAAAT
CGGTATTTTTTCTCCATTGTTCTTGACGATTGCTGCTGCTACCAGGTGTT
ATACTAGGGTACTATACTATACTATACTATACTATACTATACTATAGTGT
GCGCGGTTCGGGTGGTTGGTTGGATCGTTTTGGCGAGGACCATGTCCGGT
ATGTAGGATACGTTTGCTTCTAGAACACGTGGAACATGTTGGGCATGGTG
GCCAATGATCTGTTTCAGGCCCTTCGAGGAGAGTAGCCGCTGCGATCGAA
TATCGAGTCACATGGTACCGGGTAGCCGTAGGTCTAGCCGTGTTGCTTTG
GTATGCTGTGCGTGTAGTCGTATAACCGTATAGCCGTCGGTGGATACGTG
TATCATCTCGCGACGATTTGAAATTTGTTTGTTTCCGCATTGCTTTGGCA
TACTCTTGTGCACGAATCTGTCCCTGCCATACCGTCCCTGCCATACTGTC
CCTATTGAAGTTGGCCAAGTCCGCGGCACTAACAAGACTTCGGAACGAGA
TCAACCAGGAACTCGAAAAGGCGGCAAAGCGTTTGGCAAATCAAACCAAG
AAGGCGCAGAAAATGTGGACCAAG
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Coding sequence (CDS) from alignment at H-elongata_contig197690:126..999-

>mRNA_H-elongata_contig197690.5522.1 ID=mRNA_H-elongata_contig197690.5522.1|Name=mRNA_H-elongata_contig197690.5522.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=666bp|location=Sequence derived from alignment at H-elongata_contig197690:126..999- (Himanthalia elongata Himel1 dioecious)
ATGGTGACATGCTTTCGTGACGGTCAGGTTGACACGCTCTGTAGTGCCTT
AGATCGAAACAAGGAAGGCTTGGTGATGACTGCCTTAAAGGAACGAGGCC
TGGAGGAGACGACGGTGCTGGGTCAATGGTGGTGCAAGGGGTTGTTTGTG
GGCGGGAAAGCTTGCATGTACCAGAATGAGAATGATCTCGCTGTTGCCTG
CCTCAAGAAGGGGAGCAAGATGGTGACATGCTTTCGTGACGGTCAGGTTG
ACACGCTCTGTAGTGCCTTAGATCGAAACAAGGAAGGCTTGGTGATGACT
GCCTTAAAGGAACGAGGCCTGGAGGAGACGACGGTGCTGGGTCAATGGTG
GTGCAAGGGGTTGTTTGTGGGCGGGAAAGCTTGCATGTACCAGAATGAGA
ATGATCTCGCTGTTGCCTGCCTCAAGAAGGGGAGCAAGTTGGCCAAGTCC
GCGGCACTAACAAGACTTCGGAACGAGATCAACCAGGAACTCGAAAAGGC
GGCAAAGCGTTTGGCAAATCAAACCAAGAAGGCGCAGAAAATGTGGACCA
AGTTGGCCAAGTCCGCGGCACTAACAAGACTTCGGAACGAGATCAACCAG
GAACTCGAAAAGGCGGCAAAGCGTTTGGCAAATCAAACCAAGAAGGCGCA
GAAAATGTGGACCAAG
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