mRNA_H-elongata_contig197636.5519.1 (mRNA) Himanthalia elongata Himel1 dioecious
|
Overview
Homology
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE) HSP 1 Score: 140 bits (354), Expect = 6.170e-40 Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
RG LP F VGDYV+VARVR+ G KL TWTGPWRVVS +HV V+ IV + ++V+V R+R YADS L V ++++ VF+ + QGE +M ++++G PA G Y V++ W G E++E TW+P+S IY DAP+++
Sbjct: 9 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 2.490e-37 Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
RG LP F VGDYV+VARVR+ G KL TWTGPWRVVS +HV V+ IV + ++V+V R+R YADS L V ++++ VF+ + QGE +M ++++G PA G Y V++ W G E++E TW+P+S IY DAP+++
Sbjct: 264 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE) HSP 1 Score: 140 bits (354), Expect = 5.100e-36 Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
RG LP F VGDYV+VARVR+ G KL TWTGPWRVVS +HV V+ IV + ++V+V R+R YADS L V ++++ VF+ + QGE +M ++++G PA G Y V++ W G E++E TW+P+S IY DAP+++
Sbjct: 1487 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 3.570e-18 Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
+G + F VGD+VL +RV + KL+ W GP+RVV +H ++E ++ ++ EV+ R++ Y DSSL V AE+++ + K + +++ +P E+ VQ+AW+GLED E +WEP+ IYAD P +
Sbjct: 219 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 353
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.880e-17 Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
+G + F VGD+VL +RV + KL+ W GP+RVV +H +++ ++ ++ EV+ R++ Y DSSL V AE+++ + K + +++ +P E+ VQ+AW+GLED E +WEP+ IYAD P +
Sbjct: 842 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 976
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 1.930e-17 Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
+G + F VGD+VL +RV + KL+ W GP+RVV +H +++ ++ ++ EV+ R++ Y DSSL V AE+++ + K + +++ +P E+ VQ+AW+GLED E +WEP+ IYAD P +
Sbjct: 1258 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 1392
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 8.980e-17 Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
+G + F VGD+VL +RV + KL+ W GP+RVV +H +V+ ++ ++ EV+ R++ Y DSSL V AE++ E QG V+ V ++ VQ+AW+GLED E +WEP+ +IY D P +
Sbjct: 1073 KGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELK---EHVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKV 1202
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A225UI09_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UI09_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 3.200e-12 Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1
Query: 22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
F GD+VL +R+ V KL+ W GP+ VV H ++ ++ + V+ R++ Y D SL + E + H G M + + K +V + +++ ++WVGL+DEE +WEP+ T+Y D P+ +
Sbjct: 121 FSTGDFVLWSRIDSRLSVNKLLARWVGPFEVVEE-HPHSYMIRHLLNDKRYMVHGSRLKFYRDGSLGISEE------LLAHVGNQGMVLGVEMFKGHRKVHQGWQLLVSWVGLQDEEDSWEPLKTLYDDLPERV 247
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6G0JFH4_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JFH4_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 9.960e-12 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMA-DVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
F VGD+VL +R+ + V KL+ W GP+ VV H V+ +V +T +V+ R++ Y+DS+L V E M H G M V ++ G++++ ++WVGL+DEE +WE + ++ A P +
Sbjct: 108 FAVGDFVLWSRIDQRLTVDKLLARWVGPFEVVET-RPHSFVIRHLVTDQTFDVHCSRLKFYSDSALNVDEE------MLAHIGNQGMLLGVEAIKHHRNEHGDWQLFVSWVGLQDEEDSWESLRSMNAQVPATV 234
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.860e-11 Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 1
Query: 22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMA-DVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
F VGD+VL +R+ + V KL+ W GP+ VV H V+ +V +T +V+ R++ Y+DS+L V E M H G M V ++ G++++ ++WVGL+DEE +WE + ++ A P +
Sbjct: 781 FAVGDFVLWSRIDQRLTVDKLLARWVGPFEVVET-RPHSFVIRHLVTDQTFDVHCSRLKFYSDSALNVDEE------MLAHIGNQGMLLGVEAIKHHRNEHGDWQLFVSWVGLQDEEDSWESLRSMNAQVPATV 907 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197636.5519.1 >prot_H-elongata_contig197636.5519.1 ID=prot_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp DRGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEback to top mRNA from alignment at H-elongata_contig197636:659..1081- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197636.5519.1 ID=mRNA_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig197636:659..1081- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197636:659..1081- >mRNA_H-elongata_contig197636.5519.1 ID=mRNA_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig197636:659..1081- (Himanthalia elongata Himel1 dioecious)back to top |