mRNA_H-elongata_contig197636.5519.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197636.5519.1
Unique NamemRNA_H-elongata_contig197636.5519.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5KAI3_9PHAE (Chromo domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAI3_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 6.170e-40
Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            RG LP F VGDYV+VARVR+ G   KL  TWTGPWRVVS   +HV  V+ IV  + ++V+V R+R YADS L V ++++ VF+ +  QGE +M  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP+++
Sbjct:    9 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 146          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 2.490e-37
Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            RG LP F VGDYV+VARVR+ G   KL  TWTGPWRVVS   +HV  V+ IV  + ++V+V R+R YADS L V ++++ VF+ +  QGE +M  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP+++
Sbjct:  264 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 401          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 5.100e-36
Identity = 68/140 (48.57%), Postives = 97/140 (69.29%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            RG LP F VGDYV+VARVR+ G   KL  TWTGPWRVVS   +HV  V+ IV  + ++V+V R+R YADS L V ++++ VF+ +  QGE +M  ++++G  PA  G  Y V++ W G E++E TW+P+S IY DAP+++
Sbjct: 1487 RGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQDAPQFL 1624          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6G0RPX5_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RPX5_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.570e-18
Identity = 50/139 (35.97%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            +G +  F VGD+VL +RV    +  KL+  W GP+RVV    +H  ++E ++ ++  EV+  R++ Y DSSL V AE+++   + K      +  +++   +P    E+ VQ+AW+GLED E +WEP+  IYAD P  +
Sbjct:  219 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIEHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 353          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A4G1U2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4G1U2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.880e-17
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            +G +  F VGD+VL +RV    +  KL+  W GP+RVV    +H  +++ ++ ++  EV+  R++ Y DSSL V AE+++   + K      +  +++   +P    E+ VQ+AW+GLED E +WEP+  IYAD P  +
Sbjct:  842 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 976          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A3KPV3_9STRA (Uncharacterized protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3KPV3_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 1.930e-17
Identity = 49/139 (35.25%), Postives = 82/139 (58.99%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            +G +  F VGD+VL +RV    +  KL+  W GP+RVV    +H  +++ ++ ++  EV+  R++ Y DSSL V AE+++   + K      +  +++   +P    E+ VQ+AW+GLED E +WEP+  IYAD P  +
Sbjct: 1258 KGGICNFAVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIIDHLITKDKVEVHGSRLKFYCDSSLNVTAELKE--HVAKQGIVLGVRAIVNHRNNPVS-NEWEVQVAWIGLEDVENSWEPLRRIYADVPTKV 1392          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A225VKM9_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VKM9_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 8.980e-17
Identity = 51/139 (36.69%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    4 RGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            +G +  F VGD+VL +RV    +  KL+  W GP+RVV    +H  +V+ ++ ++  EV+  R++ Y DSSL V AE++   E    QG      V+ V        ++ VQ+AW+GLED E +WEP+ +IY D P  +
Sbjct: 1073 KGRICNFVVGDFVLWSRVDSRLQGSKLLVRWVGPFRVVEA-RQHSFIVQHLITKDKVEVHGSRLKFYCDSSLNVTAELK---EHVAKQGI-----VLGVRASITGSTQWEVQVAWIGLEDVENSWEPLRSIYVDVPTKV 1202          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A225UI09_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UI09_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 3.200e-12
Identity = 41/134 (30.60%), Postives = 71/134 (52.99%), Query Frame = 1
Query:   22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISVGKDPARVGE-YRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            F  GD+VL +R+     V KL+  W GP+ VV     H  ++  ++  +   V+  R++ Y D SL +  E      +  H G   M   + + K   +V + +++ ++WVGL+DEE +WEP+ T+Y D P+ +
Sbjct:  121 FSTGDFVLWSRIDSRLSVNKLLARWVGPFEVVEE-HPHSYMIRHLLNDKRYMVHGSRLKFYRDGSLGISEE------LLAHVGNQGMVLGVEMFKGHRKVHQGWQLLVSWVGLQDEEDSWEPLKTLYDDLPERV 247          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6G0JFH4_9STRA (Chromo domain-containing protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0JFH4_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 9.960e-12
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMA-DVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            F VGD+VL +R+ +   V KL+  W GP+ VV     H  V+  +V  +T +V+  R++ Y+DS+L V  E      M  H G   M   V ++       G++++ ++WVGL+DEE +WE + ++ A  P  +
Sbjct:  108 FAVGDFVLWSRIDQRLTVDKLLARWVGPFEVVET-RPHSFVIRHLVTDQTFDVHCSRLKFYSDSALNVDEE------MLAHIGNQGMLLGVEAIKHHRNEHGDWQLFVSWVGLQDEEDSWESLRSMNAQVPATV 234          
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Match: A0A6A4BBJ8_9STRA (Uncharacterized protein n=5 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A4BBJ8_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 2.860e-11
Identity = 44/134 (32.84%), Postives = 73/134 (54.48%), Query Frame = 1
Query:   22 FEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVEEIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMA-DVISVGKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI 420
            F VGD+VL +R+ +   V KL+  W GP+ VV     H  V+  +V  +T +V+  R++ Y+DS+L V  E      M  H G   M   V ++       G++++ ++WVGL+DEE +WE + ++ A  P  +
Sbjct:  781 FAVGDFVLWSRIDQRLTVDKLLARWVGPFEVVET-RPHSFVIRHLVTDQTFDVHCSRLKFYSDSALNVDEE------MLAHIGNQGMLLGVEAIKHHRNEHGDWQLFVSWVGLQDEEDSWESLRSMNAQVPATV 907          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197636.5519.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAI3_9PHAE6.170e-4048.57Chromo domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A6H5JVS6_9PHAE2.490e-3748.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7F6_9PHAE5.100e-3648.57Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6G0RPX5_9STRA3.570e-1835.97Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6A4G1U2_9STRA1.880e-1735.25Uncharacterized protein n=1 Tax=Phytophthora rubi ... [more]
A0A6A3KPV3_9STRA1.930e-1735.25Uncharacterized protein n=3 Tax=Phytophthora rubi ... [more]
A0A225VKM9_9STRA8.980e-1736.69RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A225UI09_9STRA3.200e-1230.60Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]
A0A6G0JFH4_9STRA9.960e-1232.84Chromo domain-containing protein n=1 Tax=Phytophth... [more]
A0A6A4BBJ8_9STRA2.860e-1132.84Uncharacterized protein n=5 Tax=Phytophthora fraga... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197636contigH-elongata_contig197636:659..1081 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.9
Seed ortholog evalue5.3e-13
Seed eggNOG ortholog4792.ETI44068
EggNOG free text desc.Chromo (CHRromatin Organisation MOdifier) domain
EggNOG OGs2CVEU@1,2RRWF@2759,3QHXS@4776
COG Functional cat.B
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size423
Cds size423
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.1291385-CDS-H-elongata_contig197636:658..10811622930117.1291385-CDS-H-elongata_contig197636:658..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197636 659..1081 -
1691679287.191274-CDS-H-elongata_contig197636:658..10811691679287.191274-CDS-H-elongata_contig197636:658..1081Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197636 659..1081 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197636.5519.1prot_H-elongata_contig197636.5519.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197636 659..1081 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197636.5519.1

>prot_H-elongata_contig197636.5519.1 ID=prot_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=141bp
DRGHLPVFEVGDYVLVARVRKPGRVRKLVQTWTGPWRVVSGGSEHVRVVE
EIVKRETQEVNVVRMRPYADSSLVVGAEVRKVFEMTKHQGEFKMADVISV
GKDPARVGEYRVQIAWVGLEDEEPTWEPMSTIYADAPKYI*
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mRNA from alignment at H-elongata_contig197636:659..1081-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197636.5519.1 ID=mRNA_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=423bp|location=Sequence derived from alignment at H-elongata_contig197636:659..1081- (Himanthalia elongata Himel1 dioecious)
GATCGTGGACATTTGCCAGTGTTTGAGGTTGGCGATTATGTCTTGGTGGC TCGGGTGCGGAAACCGGGACGTGTGCGTAAGCTCGTACAGACGTGGACTG GACCATGGCGTGTTGTGTCTGGAGGATCAGAGCATGTTCGTGTAGTGGAG GAAATTGTCAAGAGGGAAACCCAGGAAGTGAACGTGGTGCGGATGCGTCC GTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTCCGCAAAGTGTTTG AAATGACCAAGCACCAGGGAGAGTTTAAGATGGCTGACGTGATTAGTGTT GGCAAGGATCCGGCGCGAGTAGGAGAATATCGTGTGCAGATCGCGTGGGT TGGTCTTGAGGATGAGGAGCCAACGTGGGAGCCGATGTCAACTATCTACG CCGACGCTCCCAAGTATATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig197636:659..1081-

>mRNA_H-elongata_contig197636.5519.1 ID=mRNA_H-elongata_contig197636.5519.1|Name=mRNA_H-elongata_contig197636.5519.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=846bp|location=Sequence derived from alignment at H-elongata_contig197636:659..1081- (Himanthalia elongata Himel1 dioecious)
GATCGTGGACATTTGCCAGTGTTTGAGGTTGGCGATTATGTCTTGGTGGC
TCGGGTGCGGAAACCGGGACGTGTGCGTAAGCTCGTACAGACGTGGACTG
GACCATGGCGTGTTGTGTCTGGAGGATCAGAGCATGTTCGTGTAGTGGAG
GAAATTGTCAAGAGGGAAACCCAGGAAGTGAACGTGGTGCGGATGCGTCC
GTATGCTGATTCGTCTCTGGTTGTGGGGGCAGAGGTCCGCAAAGTGTTTG
AAATGACCAAGCACCAGGGAGAGTTTAAGATGGCTGACGTGATTAGTGTT
GGCAAGGATCCGGCGCGAGTAGGAGAATATCGTGTGCAGATCGCGTGGGT
TGGTCTTGAGGATGAGGAGCCAACGTGGGAGCCGATGTCAACTATCTACG
CCGACGCTCCCAAGTATATATAGGATCGTGGACATTTGCCAGTGTTTGAG
GTTGGCGATTATGTCTTGGTGGCTCGGGTGCGGAAACCGGGACGTGTGCG
TAAGCTCGTACAGACGTGGACTGGACCATGGCGTGTTGTGTCTGGAGGAT
CAGAGCATGTTCGTGTAGTGGAGGAAATTGTCAAGAGGGAAACCCAGGAA
GTGAACGTGGTGCGGATGCGTCCGTATGCTGATTCGTCTCTGGTTGTGGG
GGCAGAGGTCCGCAAAGTGTTTGAAATGACCAAGCACCAGGGAGAGTTTA
AGATGGCTGACGTGATTAGTGTTGGCAAGGATCCGGCGCGAGTAGGAGAA
TATCGTGTGCAGATCGCGTGGGTTGGTCTTGAGGATGAGGAGCCAACGTG
GGAGCCGATGTCAACTATCTACGCCGACGCTCCCAAGTATATATAG
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