mRNA_H-elongata_contig197622.5518.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197622.5518.1
Unique NamemRNA_H-elongata_contig197622.5518.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A6H5KN79_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN79_9PHAE)

HSP 1 Score: 217 bits (552), Expect = 3.350e-67
Identity = 105/144 (72.92%), Postives = 120/144 (83.33%), Query Frame = 1
Query:    1 ISKYRFLLAEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLDK 432
            ++KYRFL AEASTY+SSAKG LRAALQADAV F+RNVKPLI+DHP YQGGVGHTF+G+F+LVAPWPVH+LAKAK HFDAAL+ID  C RN YCRGLVAL +GD   A+A FQRA++C  TS EEEDV DFF  ES  AL  L+K
Sbjct:  182 LAKYRFLQAEASTYLSSAKGVLRAALQADAVAFRRNVKPLIDDHPAYQGGVGHTFLGSFYLVAPWPVHNLAKAKAHFDAALKIDSRCPRNHYCRGLVALEMGDTPMAKASFQRALRCTPTSAEEEDVRDFFHAESRGALTALEK 325          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A835ZAB6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAB6_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.150e-37
Identity = 73/140 (52.14%), Postives = 88/140 (62.86%), Query Frame = 1
Query:   10 YRFLLAEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLD 429
            + FL AEA  Y S + G ++AAL+ DA  FK N KPL+E HP++  GVGHTFMGAF+L APWPVH  +KA+ HF AA    P CRRNQY  GL AL  G   +ARA F  A+     S EE D+GDF   +    LE LD
Sbjct:  163 HAFLYAEAFMYCSCSTGVVKAALKGDAFHFKSNAKPLLEQHPSFGNGVGHTFMGAFYLGAPWPVHSASKARQHFKAAQAAFPNCRRNQYYVGLEALRAGRRDEARAAFTTALATPVGSTEEGDIGDFLLSQCRLGLEQLD 302          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A7S4BBW8_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BBW8_CHRCT)

HSP 1 Score: 105 bits (261), Expect = 2.690e-24
Identity = 55/137 (40.15%), Postives = 80/137 (58.39%), Query Frame = 1
Query:   25 AEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLDKR 435
            A+A  + +S +G L+AA+    + FK N K LI   PT+ GG+GH ++GAF+L+APWP+H+   A+ H  AA R+ P  RRN Y  G++    G   +A+  F  AV     S  EED GDF  RE+  A+   ++R
Sbjct:  201 ADAFFFSTSTRGVLKAAVSGSGLQFKANAKELIAKCPTHDGGIGHCYLGAFYLMAPWPLHNAQLAEQHLSAAHRLVPS-RRNSYYMGVLCFRCGRLREAQDYFAAAVAAPCNSPSEEDFGDFMAREASDAIRECERR 336          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A7S3AFS2_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AFS2_9EUKA)

HSP 1 Score: 97.8 bits (242), Expect = 3.290e-23
Identity = 54/130 (41.54%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   40 YVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLD 429
            + +S KG L AA     + FK N K LI  +P   GGVGH ++GAF+L+APWP+ +   AK H  AA +I    RRN Y  G++   LGD + A   F+ A K    S  E D GDF  +E+  AL V +
Sbjct:   21 FANSVKGVLTAATTGSGLKFKANAKELIARYPKLDGGVGHCYLGAFYLMAPWPIKNERLAKQHLHAAHKI-VQSRRNCYYLGVMYYRLGDRAAAAPFFRAATKAACNSPSERDFGDFILKEAADALRVCE 149          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A0M0LQZ8_9EUKA (3-hydroxyisobutyryl-hydrolase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0LQZ8_9EUKA)

HSP 1 Score: 95.9 bits (237), Expect = 2.620e-20
Identity = 54/133 (40.60%), Postives = 76/133 (57.14%), Query Frame = 1
Query:   25 AEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEV 423
            A+A  + +S KG L AA+    + FK N K LI   P   GGVGH ++GAF L+APWP+ +  +A+ H   A RI P  RRN Y  G++   LG  ++A   F++A+  +  S  E D G F  RE+ AAL+ 
Sbjct:  379 ADAYFFANSVKGVLAAAVTGSGLEFKGNSKELIRRCPRADGGVGHCYLGAFFLMAPWPLCNPKRAEEHLSTAHRIVPS-RRNSYYMGVLHYRLGRPAEAERYFRQALSAKCASASEADFGGFMLREAKAALDA 510          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A2E6VSG3_9DELT (Uncharacterized protein n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E6VSG3_9DELT)

HSP 1 Score: 90.1 bits (222), Expect = 5.670e-19
Identity = 47/130 (36.15%), Postives = 72/130 (55.38%), Query Frame = 1
Query:   28 EASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAAL 417
            +A  Y SSA G + A ++  A  +  N + + +  P Y  G+GH FMGAF+L+APWP+ D  KA+   +AA R+ P  +RN Y  G+VA   G+  +A   F+RA   +  S  E D   F +R+ +  +
Sbjct:  153 DAYMYRSSAWGIVNAVVKGAADQYVENAEKMTKKFPKYDSGLGHAFMGAFYLLAPWPLSDEEKARARMEAAHRVGPNSKRNNYYLGVVAYREGEFQEAIGHFERAKSAKCLSPAERDFCAFMKRQIIHGI 282          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: A0A0M0JZI1_9EUKA (Uncharacterized protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JZI1_9EUKA)

HSP 1 Score: 64.7 bits (156), Expect = 4.980e-10
Identity = 41/141 (29.08%), Postives = 64/141 (45.39%), Query Frame = 1
Query:   13 RFLLAEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGGVGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALALGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLDKR 435
            R +  +A  Y +++ G +R AL    V FK+         P++ GGVG+T++  F+ VAPWP+ D  +A    + A+      +RN Y   L     GD + A+A    A   R     E D   F   E +  +  L K+
Sbjct:   53 RVIELDAFMYKTASTGIVRNALTGAGVEFKKLADEFTATFPSFDGGVGYTYLAGFYHVAPWPLGDKKRALVEAERAVATSGRSKRNNYYVCLFKYVAGDKAGAQAACSAATAARCEGNTEPDYCHFLT-EQVERVNALAKK 192          
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Match: D8LUB3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LUB3_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 9.050e-8
Identity = 27/44 (61.36%), Postives = 33/44 (75.00%), Query Frame = 1
Query:  301 LGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLDK 432
            +GD   A+A FQRA++C+ TS EEEDVGDFF  ESL AL  L+K
Sbjct:    1 MGDTPMAKASFQRALRCKPTSAEEEDVGDFFHAESLGALTALEK 44          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197622.5518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KN79_9PHAE3.350e-6772.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAB6_9STRA2.150e-3752.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S4BBW8_CHRCT2.690e-2440.15Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3AFS2_9EUKA3.290e-2341.54Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A0M0LQZ8_9EUKA2.620e-2040.603-hydroxyisobutyryl-hydrolase n=1 Tax=Chrysochromu... [more]
A0A2E6VSG3_9DELT5.670e-1936.15Uncharacterized protein n=1 Tax=Myxococcales bacte... [more]
A0A0M0JZI1_9EUKA4.980e-1029.08Uncharacterized protein n=1 Tax=Chrysochromulina t... [more]
D8LUB3_ECTSI9.050e-861.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197622contigH-elongata_contig197622:261..1099 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2903.EOD10966
EggNOG OGs2D6NE@1,2T2FT@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size435
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.0625782-CDS-H-elongata_contig197622:260..4821622930117.0625782-CDS-H-elongata_contig197622:260..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197622 261..482 +
1691679287.1712472-CDS-H-elongata_contig197622:260..4821691679287.1712472-CDS-H-elongata_contig197622:260..482Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197622 261..482 +
1622930117.0740864-CDS-H-elongata_contig197622:886..10991622930117.0740864-CDS-H-elongata_contig197622:886..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197622 887..1099 +
1691679287.1816456-CDS-H-elongata_contig197622:886..10991691679287.1816456-CDS-H-elongata_contig197622:886..1099Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197622 887..1099 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197622.5518.1prot_H-elongata_contig197622.5518.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197622 261..1099 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197622.5518.1

>prot_H-elongata_contig197622.5518.1 ID=prot_H-elongata_contig197622.5518.1|Name=mRNA_H-elongata_contig197622.5518.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=145bp
ISKYRFLLAEASTYVSSAKGTLRAALQADAVTFKRNVKPLIEDHPTYQGG
VGHTFMGAFHLVAPWPVHDLAKAKGHFDAALRIDPMCRRNQYCRGLVALA
LGDASKARACFQRAVKCRSTSREEEDVGDFFRRESLAALEVLDKR
back to top

mRNA from alignment at H-elongata_contig197622:261..1099+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197622.5518.1 ID=mRNA_H-elongata_contig197622.5518.1|Name=mRNA_H-elongata_contig197622.5518.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=839bp|location=Sequence derived from alignment at H-elongata_contig197622:261..1099+ (Himanthalia elongata Himel1 dioecious)
ATCTCCAAGTATCGCTTCCTGCTCGCGGAAGCGTCGACCTACGTCTCCAG CGCGAAGGGTACCCTGCGAGCGGCTCTGCAGGCGGACGCCGTGACTTTCA AGCGAAACGTCAAGCCTCTTATCGAAGACCATCCGACCTACCAGGGTGGT GTGGGGCACACCTTTATGGGAGCGTTTCACCTGGTGGCACCCTGGCCAGT GCACGACTTAGCGAAGGCAAAGGTGGGGGGGTTGACGGCACGCGCCGAAT TATGACGACTTGCAGGCAGCACCGTACCGGACTGGACCGCATGTTGTATG TTTGGTCAAGCCGTACGATAAACGTTTGGTAGGCGGCGTGGTCCGGCCAA GAAGTGCAGCTCTCTTTCTCTCTCATTCTCTCTGCGGAAGAAGCGGCCGG TGCGACGGTGCAACTCTTATCTCTCTGCGCAAGCGCGCGAAAATTATTTG GAAGCCACCACAGTGATGTTCAGCAACCCTTTTACTCCTCGTTTCCCTCA ACACTCCCATCTCACATATGATCCCCCATATTTTTTCGTGTGCCTCTCGT GCCTTTTTGCGTGGTTCTCCTATATCTATCTTATCTCTCGTGAACGTGTC GCGGTTCGCGGACTCGTGCGACACAGGGGCACTTTGACGCCGCCTTGAGG ATCGACCCAATGTGTCGAAGAAATCAGTACTGCCGCGGCCTCGTGGCGCT CGCGTTGGGCGACGCCTCGAAGGCTAGGGCTTGCTTTCAGCGGGCGGTCA AGTGCCGGTCCACATCGCGAGAAGAAGAAGATGTCGGAGATTTTTTCCGG AGAGAGAGCCTAGCGGCGCTGGAGGTGCTCGACAAGAGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig197622:261..1099+

>mRNA_H-elongata_contig197622.5518.1 ID=mRNA_H-elongata_contig197622.5518.1|Name=mRNA_H-elongata_contig197622.5518.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=870bp|location=Sequence derived from alignment at H-elongata_contig197622:261..1099+ (Himanthalia elongata Himel1 dioecious)
ATCTCCAAGTATCGCTTCCTGCTCGCGGAAGCGTCGACCTACGTCTCCAG
CGCGAAGGGTACCCTGCGAGCGGCTCTGCAGGCGGACGCCGTGACTTTCA
AGCGAAACGTCAAGCCTCTTATCGAAGACCATCCGACCTACCAGGGTGGT
GTGGGGCACACCTTTATGGGAGCGTTTCACCTGGTGGCACCCTGGCCAGT
GCACGACTTAGCGAAGGCAAAGATCTCCAAGTATCGCTTCCTGCTCGCGG
AAGCGTCGACCTACGTCTCCAGCGCGAAGGGTACCCTGCGAGCGGCTCTG
CAGGCGGACGCCGTGACTTTCAAGCGAAACGTCAAGCCTCTTATCGAAGA
CCATCCGACCTACCAGGGTGGTGTGGGGCACACCTTTATGGGAGCGTTTC
ACCTGGTGGCACCCTGGCCAGTGCACGACTTAGCGAAGGCAAAGGGGCAC
TTTGACGCCGCCTTGAGGATCGACCCAATGTGTCGAAGAAATCAGTACTG
CCGCGGCCTCGTGGCGCTCGCGTTGGGCGACGCCTCGAAGGCTAGGGCTT
GCTTTCAGCGGGCGGTCAAGTGCCGGTCCACATCGCGAGAAGAAGAAGAT
GTCGGAGATTTTTTCCGGAGAGAGAGCCTAGCGGCGCTGGAGGTGCTCGA
CAAGAGAGGGCACTTTGACGCCGCCTTGAGGATCGACCCAATGTGTCGAA
GAAATCAGTACTGCCGCGGCCTCGTGGCGCTCGCGTTGGGCGACGCCTCG
AAGGCTAGGGCTTGCTTTCAGCGGGCGGTCAAGTGCCGGTCCACATCGCG
AGAAGAAGAAGATGTCGGAGATTTTTTCCGGAGAGAGAGCCTAGCGGCGC
TGGAGGTGCTCGACAAGAGA
back to top