mRNA_H-elongata_contig197538.5517.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197538.5517.1
Unique NamemRNA_H-elongata_contig197538.5517.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: A0A6H5KUA5_9PHAE (MULE domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUA5_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 7.730e-26
Identity = 52/97 (53.61%), Postives = 64/97 (65.98%), Query Frame = 1 
Query:    1 RFGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHLH 291
            R+G+V LYDD AVKN Y  PLG + VID+EY T IV QI+ ADTT D  +W+    + SR    P  F+ DAD AMT A R+V P+ L RRC WHL+
Sbjct:  245 RYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQIITADTTTDALLWMLKSALESRGGKQPDIFIQDADAAMTAAVREVFPDALARRCLWHLN 341
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: A0A6H5JUZ2_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUZ2_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.710e-24
Identity = 52/97 (53.61%), Postives = 65/97 (67.01%), Query Frame = 1 
Query:    1 RFGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHLH 291
            R+G+V LYDD AVKN Y  PLG + VID+EY T IV QI+ ADTT DTF+ +    + SR    P  F+ DAD AMT A R+V P+ L RRC W+L+
Sbjct:  296 RYGHVALYDDTAVKNRYRMPLGVLAVIDSEYRTRIVGQIITADTTTDTFLSMLKSALESRGGKQPDIFIQDADAAMTAAVREVFPDALARRCLWYLN 392
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: A0A453CHV3_AEGTS (Protein FAR1-RELATED SEQUENCE n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453CHV3_AEGTS)

HSP 1 Score: 76.6 bits (187), Expect = 2.210e-14
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+VI +D     N Y  P G  V ++  + + I+A +L+ D T D+F+WVF++++       P   + D + AM  A  KVMPNT HR C+WH+
Sbjct:   73 FGDVITFDTTYRTNLYDMPFGLFVGVNNHFQSVIMAGVLVRDETEDSFVWVFSEFLRMMGGSAPVTILTDQNRAMELAISKVMPNTAHRWCKWHV 167
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BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: UPI001036D65D (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036D65D)

HSP 1 Score: 73.6 bits (179), Expect = 3.140e-13
Identity = 33/96 (34.38%), Postives = 53/96 (55.21%), Query Frame = 1 
Query:    1 RFGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            +FG+V+++D     N Y  P   +  + + + T I A +LLA+ T++T+IWV   ++ +     P   + D D AM  A R+V P+  HR C WHL
Sbjct:  269 KFGDVLIFDSTYRTNAYKKPFVMLAGVTSHFRTTIFACVLLANETIETYIWVLETFMEAMGNKAPVSVLTDGDKAMREAIRRVFPDARHRLCNWHL 364
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: UPI0010364578 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010364578)

HSP 1 Score: 72.8 bits (177), Expect = 7.140e-13
Identity = 33/95 (34.74%), Postives = 51/95 (53.68%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+V+++D     N Y  P   +  +   + T +    LLA  T++T+IWV  K++ + +   P   +ID D AM  A + VMP   HR C+WHL
Sbjct:  220 FGDVLMFDTTYRTNAYNKPFVILQGVSNHFQTTVFGCALLASETVETYIWVLEKFLDAMDHKMPLSVIIDGDKAMCRAIKTVMPTARHRLCKWHL 314
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: UPI001036D4D2 (protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=Camellia sinensis TaxID=4442 RepID=UPI001036D4D2)

HSP 1 Score: 71.2 bits (173), Expect = 7.300e-13
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+V+++D     N Y  P   +  +   + T +    LLA  T++T+IWV  K++ + +   P   + D D AM  A + VMP   HR C+WHL
Sbjct:   84 FGDVLMFDTTYRTNAYNKPFVILQGVSNHFQTTVFGCALLASKTVETYIWVLEKFLDAMDHKMPLSIITDGDKAMCRAIKTVMPTARHRLCKWHL 178
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: UPI00188E3046 (protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Triticum dicoccoides TaxID=85692 RepID=UPI00188E3046)

HSP 1 Score: 71.6 bits (174), Expect = 1.780e-12
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+ I +D     N Y  P G  V ++  + T I   +L+ D T++TF WVF ++I       P+  + D   AM  A +KVMP+T HR C+WH+
Sbjct:  171 FGDAITFDTTYRTNMYDMPFGLFVGVNNHFQTIIFGGVLVRDETVETFEWVFTEFIRMMGGKHPQTVLTDQCRAMELALQKVMPDTTHRWCKWHV 265
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: A0A453LIA1_AEGTS (MULE domain-containing protein n=2 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453LIA1_AEGTS)

HSP 1 Score: 70.5 bits (171), Expect = 2.430e-12
Identity = 35/95 (36.84%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+ I +D     N Y  P G  V ++  + + I   +LL D TM+TF WVF ++I       P+  + D   A+  A  KVM NT HR C+WH+
Sbjct:  171 FGDAITFDTTYRTNMYHMPFGLFVGVNNHFQSVIFGGVLLRDETMETFEWVFTEFIRMMGGKHPQTILTDQCRAVELAIEKVMSNTTHRWCKWHI 265
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: UPI0010355B0F (protein FAR1-RELATED SEQUENCE 5-like n=2 Tax=Camellia sinensis TaxID=4442 RepID=UPI0010355B0F)

HSP 1 Score: 70.9 bits (172), Expect = 3.280e-12
Identity = 32/95 (33.68%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    4 FGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
            FG+V+++D     N Y  P   +  +   + T +    LLA  T++T+IWV  K++ + +   P   + D D AM  A + VMP   HR C+WHL
Sbjct:  279 FGDVLMFDTTYRTNAYNKPFVILQGVSNHFQTTVFGCALLASETVETYIWVLEKFLDAMDHKMPLSVITDGDKAMCRAIKTVMPTARHRLCKWHL 373
[Close]
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Match: A0A5J4ZHJ7_9ASTE (Protein FAR1-RELATED SEQUENCE n=1 Tax=Nyssa sinensis TaxID=561372 RepID=A0A5J4ZHJ7_9ASTE)

HSP 1 Score: 70.1 bits (170), Expect = 6.320e-12
Identity = 31/96 (32.29%), Postives = 50/96 (52.08%), Query Frame = 1 
Query:    1 RFGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFIWVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHL 288
             FG+V+ +D   + N Y  P    V ++   ++ ++   L+++   DTF W+F  ++       P G + D D AM  A  KV+PNT HR C WH+
Sbjct:  105 EFGDVVTFDTTYLTNKYDMPFAPFVGVNHHGHSILLGCGLISNEDTDTFTWLFQTWLTCMSGRAPSGIITDQDKAMKKAIEKVLPNTCHRWCLWHI 200
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197538.5517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KUA5_9PHAE7.730e-2653.61MULE domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5JUZ2_9PHAE1.710e-2453.61SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A453CHV3_AEGTS2.210e-1437.89Protein FAR1-RELATED SEQUENCE n=2 Tax=Aegilops tau... [more]
UPI001036D65D3.140e-1334.38protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Camel... [more]
UPI00103645787.140e-1334.74protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Camel... [more]
UPI001036D4D27.300e-1333.68protein FAR-RED IMPAIRED RESPONSE 1-like n=1 Tax=C... [more]
UPI00188E30461.780e-1236.84protein FAR1-RELATED SEQUENCE 5-like n=1 Tax=Triti... [more]
A0A453LIA1_AEGTS2.430e-1236.84MULE domain-containing protein n=2 Tax=Aegilops ta... [more]
UPI0010355B0F3.280e-1233.68protein FAR1-RELATED SEQUENCE 5-like n=2 Tax=Camel... [more]
A0A5J4ZHJ7_9ASTE6.320e-1232.29Protein FAR1-RELATED SEQUENCE n=1 Tax=Nyssa sinens... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197538contigH-elongata_contig197538:232..525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue5.3e-20
Seed eggNOG ortholog2880.D8LU83
Preferred nameFHY3
GOsGO:0003674,GO:0003700,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0007154,GO:0007165,GO:0007602,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009581,GO:0009582,GO:0009583,GO:0009585,GO:0009605,GO:0009628,GO:0009639,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010017,GO:0010018,GO:0010218,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0023052,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0042752,GO:0042753,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045893,GO:0045935,GO:0048511,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0051606,GO:0051716,GO:0060255,GO:0065007,GO:0071214,GO:0071478,GO:0071482,GO:0071489,GO:0071490,GO:0080090,GO:0104004,GO:0140110,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.MULE transposase domain
EggNOG OGs2CMBY@1,2QPXR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930117.0154123-CDS-H-elongata_contig197538:231..5251622930117.0154123-CDS-H-elongata_contig197538:231..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197538 232..525 -
1691679287.1579206-CDS-H-elongata_contig197538:231..5251691679287.1579206-CDS-H-elongata_contig197538:231..525Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197538 232..525 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197538.5517.1prot_H-elongata_contig197538.5517.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197538 232..525 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197538.5517.1

>prot_H-elongata_contig197538.5517.1 ID=prot_H-elongata_contig197538.5517.1|Name=mRNA_H-elongata_contig197538.5517.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
RFGNVILYDDVAVKNNYIFPLGFMVVIDAEYNTCIVAQILLADTTMDTFI
WVFNKYIASRERLTPRGFVIDADVAMTGAARKVMPNTLHRRCQWHLH*
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mRNA from alignment at H-elongata_contig197538:232..525-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197538.5517.1 ID=mRNA_H-elongata_contig197538.5517.1|Name=mRNA_H-elongata_contig197538.5517.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=294bp|location=Sequence derived from alignment at H-elongata_contig197538:232..525- (Himanthalia elongata Himel1 dioecious)
CGGTTCGGCAATGTCATCCTCTACGATGACGTGGCGGTGAAGAACAACTA
TATTTTTCCTCTTGGCTTCATGGTCGTAATCGATGCTGAGTACAACACGT
GCATCGTTGCCCAGATTCTGTTGGCAGACACAACGATGGATACCTTCATT
TGGGTCTTCAACAAGTATATTGCCTCGCGGGAGAGACTGACACCACGTGG
TTTTGTCATCGATGCAGATGTGGCCATGACGGGTGCGGCGCGAAAAGTGA
TGCCAAACACACTACACCGTCGCTGTCAGTGGCATCTTCACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig197538:232..525-

>mRNA_H-elongata_contig197538.5517.1 ID=mRNA_H-elongata_contig197538.5517.1|Name=mRNA_H-elongata_contig197538.5517.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig197538:232..525- (Himanthalia elongata Himel1 dioecious)
CGGTTCGGCAATGTCATCCTCTACGATGACGTGGCGGTGAAGAACAACTA
TATTTTTCCTCTTGGCTTCATGGTCGTAATCGATGCTGAGTACAACACGT
GCATCGTTGCCCAGATTCTGTTGGCAGACACAACGATGGATACCTTCATT
TGGGTCTTCAACAAGTATATTGCCTCGCGGGAGAGACTGACACCACGTGG
TTTTGTCATCGATGCAGATGTGGCCATGACGGGTGCGGCGCGAAAAGTGA
TGCCAAACACACTACACCGTCGCTGTCAGTGGCATCTTCACTAACGGTTC
GGCAATGTCATCCTCTACGATGACGTGGCGGTGAAGAACAACTATATTTT
TCCTCTTGGCTTCATGGTCGTAATCGATGCTGAGTACAACACGTGCATCG
TTGCCCAGATTCTGTTGGCAGACACAACGATGGATACCTTCATTTGGGTC
TTCAACAAGTATATTGCCTCGCGGGAGAGACTGACACCACGTGGTTTTGT
CATCGATGCAGATGTGGCCATGACGGGTGCGGCGCGAAAAGTGATGCCAA
ACACACTACACCGTCGCTGTCAGTGGCATCTTCACTAA
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