mRNA_H-elongata_contig197537.5516.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197537.5516.1
Unique NamemRNA_H-elongata_contig197537.5516.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: D7G9G7_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G7_ECTSI)

HSP 1 Score: 360 bits (923), Expect = 6.910e-121
Identity = 169/219 (77.17%), Postives = 194/219 (88.58%), Query Frame = 1
Query:    1 AISLQRAWKIRHKYVYMKAIKQQKVCRDRLEEIRTGLQVDCEPCASAGKKSADIKFRYLKKAWRNTDKLLFEGIPRVQMYDRGDNWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGVGLCVPPMCLLDYKGVRMLAQ 657
            A++LQRAW+ R  YV++K +KQ+K+CRD  +E+R GL VDCE C+SAGKKSADIK R  KKAW++TD+LLF+G+ RVQM DRGDNWN+RWQEALSLPNKT MD  Y++ SLD VY+DFVHTA TYGRTIISEYFLHEYMKSV+PK+LGG+ GGKKY+WRGILFKLADG QGPYGGSDEAAAKAAGHELRGASEYL  GVGLC+PPMCLLDYKG RMLAQ
Sbjct:   15 AVALQRAWRKRSAYVFVKDLKQEKLCRDMRKEMRAGLHVDCEACSSAGKKSADIKSRNQKKAWKDTDELLFKGMARVQMSDRGDNWNDRWQEALSLPNKTKMDINYKRRSLDAVYSDFVHTAVTYGRTIISEYFLHEYMKSVKPKRLGGLAGGKKYLWRGILFKLADGSQGPYGGSDEAAAKAAGHELRGASEYLHTGVGLCIPPMCLLDYKGFRMLAQ 233          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A835YKN4_9STRA (CLU domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN4_9STRA)

HSP 1 Score: 187 bits (475), Expect = 7.550e-56
Identity = 90/146 (61.64%), Postives = 111/146 (76.03%), Query Frame = 1
Query:  217 GIPRVQMYDRGDNWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGV-GLCVPPMCLLDYKGVRML 651
            G+PRV++ D GDNWN  +QEA +LP  T M++ Y+   L TVY DF   A  YGRTIISE+FLH Y++S+RP+++GG  GGKK+++RGILFKLADG  GP+ GSDEAAAKAAGHELRG S Y   GV GL   PMC+LDYKG RM+
Sbjct:   19 GLPRVKVEDLGDNWNALFQEAQALPEATEMERTYKHLLLATVYRDFTAAAVMYGRTIISEFFLHSYLRSIRPREVGGFAGGKKFLFRGILFKLADGAVGPWAGSDEAAAKAAGHELRGHSYYAHAGVAGLHFSPMCILDYKGFRMV 164          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: D7G5G9_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G9_ECTSI)

HSP 1 Score: 164 bits (415), Expect = 4.050e-43
Identity = 91/161 (56.52%), Postives = 108/161 (67.08%), Query Frame = 1
Query:  181 KAWRNTDKLLFEGIPRVQMYDRGDNWNERWQEALSLPNKTAMDKGYRK-SSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGV-GLCVPPMCLLDYKGVRMLAQ 657
            ++W    +L+F      Q Y    NWNE +Q AL LP +T  D+ YRK   L TV  DF  TA TYG+TIISEYFL    KS+R K+LGGV GG K+VWRGILFKLADG +GPY G+DEAAAK AGH+LRGA+ YL   + GL     CL+DYKG RM AQ
Sbjct:  224 RSWERFRELVFPD-DMEQAYRETGNWNELFQSALDLPEETP-DQCYRKWERLTTVNRDFKATAVTYGKTIISEYFLETEHKSIRLKELGGVAGGMKFVWRGILFKLADGSKGPYLGNDEAAAKGAGHDLRGATHYLATRIRGLRYALQCLIDYKGFRMTAQ 382          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: D8LF64_ECTSI (Clu domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF64_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 1.120e-41
Identity = 84/145 (57.93%), Postives = 98/145 (67.59%), Query Frame = 1
Query:  232 QMYDRGDNWNERWQEALSLPNKTAMDKGYRK-SSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQ-LGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGV-GLCVPPMCLLDYKGVRMLAQ 657
            Q Y    NWNE +Q AL LP  T  D+ YRK   + TV  DF   A TYG+TIISEYFL    KS++P + LGG  GG K+VWRGILFKLADG +GPY G+DEAAAK AGH+LRGA+ YL   + GL     CL+DYKG RM AQ
Sbjct:    3 QPYRETGNWNELFQSALDLPEDTP-DQCYRKWERMTTVNRDFKAAAVTYGKTIISEYFLDLKHKSIKPNENLGGSAGGMKFVWRGILFKLADGSRGPYLGNDEAAAKGAGHDLRGATHYLDARIRGLRYALQCLIDYKGFRMTAQ 146          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A7S4DG52_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG52_HETAK)

HSP 1 Score: 139 bits (350), Expect = 1.900e-38
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 1
Query:  247 GDNWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELR 567
            GD+WNER+Q A+SLP  T  +K  + + L +V  DF+ TA TY +T+ISEYFL E++KSV+  Q GG+ GG+KY WRGILFKLADG+ GPY GSD AAAKA GH+LR
Sbjct:   37 GDDWNERFQHAISLPESTDEEKLLKYTLLTSVNRDFIATAETYAKTVISEYFLPEHLKSVKSGQFGGIAGGRKYCWRGILFKLADGQCGPYEGSDAAAAKAMGHDLR 143          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A7R9UF47_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF47_9STRA)

HSP 1 Score: 130 bits (327), Expect = 5.620e-33
Identity = 70/146 (47.95%), Postives = 96/146 (65.75%), Query Frame = 1
Query:  223 PRVQMYDRGDNWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGVG-LCVPPMCLLDYKGVRMLAQ 657
            P V +    D WNER+Q  L LP+ +  ++ +R + L   YADFV TA TYG  +ISE FL+E +K++  + + G+ GG+KY +RGI FKLA G + PYGG   AA+KA GHEL+GA+ Y R  V  L +P   L+DY+G R+LAQ
Sbjct:   20 PSVGLIHEPD-WNERYQAGLRLPDGSDEEQRFRLAHLTATYADFVATATTYGMVLISELFLNEELKTMSFESVPGLAGGEKYQYRGIFFKLATGHE-PYGGDYNAASKAMGHELKGATHYSRCNVTELNIPMHVLIDYRGYRLLAQ 163          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A835ZAL9_9STRA (CLU domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAL9_9STRA)

HSP 1 Score: 118 bits (295), Expect = 2.540e-29
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = 1
Query:  328 SLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGV-GLCVPPMCLLDYKGVRMLAQ 657
            +L  +  DF+  A TYGRTIISEYFL E  KSV P  +GG+ GG+K++ RGILFKLADG +GPY GSDEAA KA  ++L+GA   ++  + GL      L+DYKG RM AQ
Sbjct:   22 ALTALNKDFISAAVTYGRTIISEYFLKEEAKSVCPSLVGGIAGGRKFLLRGILFKLADGSRGPYDGSDEAAGKALNNDLKGAVHLVKCSIPGLFCSLQALIDYKGFRMHAQ 132          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A2P6N2S8_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N2S8_9EUKA)

HSP 1 Score: 114 bits (286), Expect = 1.250e-25
Identity = 59/135 (43.70%), Postives = 89/135 (65.93%), Query Frame = 1
Query:  253 NWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPK-QLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGVGLCVPPMCLLDYKGVRMLA 654
            +WN+ +Q+ L+LP  T  +K ++ S L ++  DFVH A+T+G+ IISE +LH   +++ P  ++GGV GG+KYV+ GILFK A   +  YGG D  A KAA HEL+  + Y     G+ VP M L++Y+G R++A
Sbjct:  170 DWNDEFQKILALPENTEDEKLHKYSELSSLNKDFVHIAKTFGKIIISERYLHAKHRTINPTTEVGGVAGGEKYVYHGILFKFAIDWRNLYGG-DHNAMKAANHELQAVTRYYECE-GISVPLMTLIEYRGYRLVA 302          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: A0A2P6NJP1_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NJP1_9EUKA)

HSP 1 Score: 110 bits (276), Expect = 2.680e-24
Identity = 61/137 (44.53%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  253 NWNERWQEALSLPN--KTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGVG-LCVPPMCLLDYKGVRMLA 654
            +WN+++Q+ L   N    A ++    S L  +  DFVH A+TYG+ IISE +L +  K+++P  +GG  GG KYV +GILFKLA    G YG SD AAAK AG++L+G  +Y  +G+  L  P M L+DY G R+ A
Sbjct:  701 SWNQQFQQILENLNLCDDAQERSTIYSQLSNLAQDFVHYAKTYGKLIISELYLPDDQKTIKPNDIGGFAGGVKYVVKGILFKLAVDSHGLYG-SDMAAAKVAGNDLKGLVQYFNLGISRLHFPLMALVDYMGFRIQA 836          
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Match: F0ZU77_DICPU (Clu domain-containing protein (Fragment) n=1 Tax=Dictyostelium purpureum TaxID=5786 RepID=F0ZU77_DICPU)

HSP 1 Score: 109 bits (272), Expect = 8.820e-24
Identity = 62/137 (45.26%), Postives = 87/137 (63.50%), Query Frame = 1
Query:  253 NWNERWQEALSLPNKTAMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGVTGGKKYVWRGILFKLADGRQ--GPYGGSDEAAAKAAGHELRGASEYLRIGV-GLCVPPMCLLDYKGVRMLA 654
            +WN  +Q  L + +   ++K  R SSL+    DFV+ A TYGR IISE FL   +K+++P  +GG+ GG+KY+ +GILFK A   +  G YG SDE A K A HEL G + +L  G+ GL VP M  +DY+G R++A
Sbjct:  256 SWNSEFQRLLEMDD--CLEKFERLSSLEH---DFVYAAETYGRIIISENFLSNELKTIKPVSVGGIAGGEKYIVQGILFKFALENETFGLYG-SDENAMKTAAHELNGCTSFLNCGIKGLHVPLMAYIDYRGFRLMA 386          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197537.5516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9G7_ECTSI6.910e-12177.17Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YKN4_9STRA7.550e-5661.64CLU domain-containing protein n=1 Tax=Tribonema mi... [more]
D7G5G9_ECTSI4.050e-4356.52Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LF64_ECTSI1.120e-4157.93Clu domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S4DG52_HETAK1.900e-3860.75Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7R9UF47_9STRA5.620e-3347.95Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A835ZAL9_9STRA2.540e-2954.95CLU domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A2P6N2S8_9EUKA1.250e-2543.70Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A2P6NJP1_9EUKA2.680e-2444.53Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
F0ZU77_DICPU8.820e-2445.26Clu domain-containing protein (Fragment) n=1 Tax=D... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197537contigH-elongata_contig197537:280..951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score362.8
Seed ortholog evalue1.1e-97
Seed eggNOG ortholog2880.D7G9G7
EggNOG free text desc.Clustered mitochondria
EggNOG OGs2DZMV@1,2S753@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCLU domain
Ec32 orthologEc-28_000850.1
Exons1
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.9652224-CDS-H-elongata_contig197537:279..9511622930116.9652224-CDS-H-elongata_contig197537:279..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197537 280..951 +
1691679287.1459503-CDS-H-elongata_contig197537:279..9511691679287.1459503-CDS-H-elongata_contig197537:279..951Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197537 280..951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197537.5516.1prot_H-elongata_contig197537.5516.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197537 280..951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197537.5516.1

>prot_H-elongata_contig197537.5516.1 ID=prot_H-elongata_contig197537.5516.1|Name=mRNA_H-elongata_contig197537.5516.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
AISLQRAWKIRHKYVYMKAIKQQKVCRDRLEEIRTGLQVDCEPCASAGKK
SADIKFRYLKKAWRNTDKLLFEGIPRVQMYDRGDNWNERWQEALSLPNKT
AMDKGYRKSSLDTVYADFVHTARTYGRTIISEYFLHEYMKSVRPKQLGGV
TGGKKYVWRGILFKLADGRQGPYGGSDEAAAKAAGHELRGASEYLRIGVG
LCVPPMCLLDYKGVRMLAQQSSR*
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mRNA from alignment at H-elongata_contig197537:280..951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197537.5516.1 ID=mRNA_H-elongata_contig197537.5516.1|Name=mRNA_H-elongata_contig197537.5516.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=672bp|location=Sequence derived from alignment at H-elongata_contig197537:280..951+ (Himanthalia elongata Himel1 dioecious)
GCGATATCCCTTCAGCGTGCATGGAAAATACGACATAAGTATGTCTACAT GAAGGCAATCAAGCAGCAAAAAGTTTGCCGCGATCGGCTCGAGGAGATTC GGACGGGGCTGCAGGTGGATTGCGAGCCGTGCGCCTCGGCGGGGAAAAAA TCCGCGGACATAAAGTTCCGGTACCTGAAGAAGGCATGGAGGAACACGGA CAAGCTCCTCTTCGAGGGTATACCGAGGGTTCAGATGTACGATCGTGGGG ACAACTGGAACGAGCGCTGGCAGGAAGCGCTCAGCCTCCCCAACAAAACC GCCATGGATAAGGGGTACAGGAAATCTAGCCTCGATACTGTTTACGCGGA CTTCGTCCACACGGCGAGAACTTACGGCCGGACCATCATCTCCGAGTACT TTCTGCACGAGTATATGAAGAGCGTCAGGCCAAAGCAGCTCGGAGGAGTC ACAGGTGGTAAGAAATATGTCTGGCGAGGTATCCTCTTTAAGCTTGCGGA CGGCAGACAAGGGCCCTATGGGGGCAGCGACGAAGCTGCGGCCAAAGCCG CAGGGCACGAGCTGCGAGGGGCGTCCGAATATCTCAGGATTGGCGTCGGC CTGTGCGTGCCTCCCATGTGTCTTCTGGACTACAAGGGTGTCAGGATGCT GGCGCAACAGTCCTCAAGGTAG
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Coding sequence (CDS) from alignment at H-elongata_contig197537:280..951+

>mRNA_H-elongata_contig197537.5516.1 ID=mRNA_H-elongata_contig197537.5516.1|Name=mRNA_H-elongata_contig197537.5516.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig197537:280..951+ (Himanthalia elongata Himel1 dioecious)
GCGATATCCCTTCAGCGTGCATGGAAAATACGACATAAGTATGTCTACAT
GAAGGCAATCAAGCAGCAAAAAGTTTGCCGCGATCGGCTCGAGGAGATTC
GGACGGGGCTGCAGGTGGATTGCGAGCCGTGCGCCTCGGCGGGGAAAAAA
TCCGCGGACATAAAGTTCCGGTACCTGAAGAAGGCATGGAGGAACACGGA
CAAGCTCCTCTTCGAGGGTATACCGAGGGTTCAGATGTACGATCGTGGGG
ACAACTGGAACGAGCGCTGGCAGGAAGCGCTCAGCCTCCCCAACAAAACC
GCCATGGATAAGGGGTACAGGAAATCTAGCCTCGATACTGTTTACGCGGA
CTTCGTCCACACGGCGAGAACTTACGGCCGGACCATCATCTCCGAGTACT
TTCTGCACGAGTATATGAAGAGCGTCAGGCCAAAGCAGCTCGGAGGAGTC
ACAGGTGGTAAGAAATATGTCTGGCGAGGTATCCTCTTTAAGCTTGCGGA
CGGCAGACAAGGGCCCTATGGGGGCAGCGACGAAGCTGCGGCCAAAGCCG
CAGGGCACGAGCTGCGAGGGGCGTCCGAATATCTCAGGATTGGCGTCGGC
CTGTGCGTGCCTCCCATGTGTCTTCTGGACTACAAGGGTGTCAGGATGCT
GGCGCAACAGTCCTCAAGGTAGGCGATATCCCTTCAGCGTGCATGGAAAA
TACGACATAAGTATGTCTACATGAAGGCAATCAAGCAGCAAAAAGTTTGC
CGCGATCGGCTCGAGGAGATTCGGACGGGGCTGCAGGTGGATTGCGAGCC
GTGCGCCTCGGCGGGGAAAAAATCCGCGGACATAAAGTTCCGGTACCTGA
AGAAGGCATGGAGGAACACGGACAAGCTCCTCTTCGAGGGTATACCGAGG
GTTCAGATGTACGATCGTGGGGACAACTGGAACGAGCGCTGGCAGGAAGC
GCTCAGCCTCCCCAACAAAACCGCCATGGATAAGGGGTACAGGAAATCTA
GCCTCGATACTGTTTACGCGGACTTCGTCCACACGGCGAGAACTTACGGC
CGGACCATCATCTCCGAGTACTTTCTGCACGAGTATATGAAGAGCGTCAG
GCCAAAGCAGCTCGGAGGAGTCACAGGTGGTAAGAAATATGTCTGGCGAG
GTATCCTCTTTAAGCTTGCGGACGGCAGACAAGGGCCCTATGGGGGCAGC
GACGAAGCTGCGGCCAAAGCCGCAGGGCACGAGCTGCGAGGGGCGTCCGA
ATATCTCAGGATTGGCGTCGGCCTGTGCGTGCCTCCCATGTGTCTTCTGG
ACTACAAGGGTGTCAGGATGCTGGCGCAACAGTCCTCAAGGTAG
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