mRNA_H-elongata_contig19748.5511.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19748.5511.1
Unique NamemRNA_H-elongata_contig19748.5511.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19748.5511.1 vs. uniprot
Match: D8LGY2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGY2_ECTSI)

HSP 1 Score: 99.8 bits (247), Expect = 2.850e-22
Identity = 62/114 (54.39%), Postives = 76/114 (66.67%), Query Frame = 1 
Query:   76 YVGVPIDDDVP-----PGVGHGASWAEGARFGDLYSDVARGAVSDLAGANKAAKMSARRDN----DQLRFTTAQARARAEEDERALEVARLNAKRRDAEGIDMRPHPGNRFKPE 390
            YVGVPIDDD       P     +     A  G ++ DV+ G  +D  GA +AAK SARRDN    ++ RFT AQA++R EED RA+E AR+NAKRRDAEG+DMRPHPGNR +PE
Sbjct:   62 YVGVPIDDDNHNELRRPSTAAASYDNSRAGAGRVHGDVSVGVGADYDGAAEAAKASARRDNAAFFEKKRFTEAQAKSRVEEDLRAIETARINAKRRDAEGLDMRPHPGNRLEPE 175
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19748.5511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LGY2_ECTSI2.850e-2254.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19748contigH-elongata_contig19748:1145..2123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_001480.1
Exons2
Model size577
Cds size573
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.5412323-CDS-H-elongata_contig19748:1144..13981622930116.5412323-CDS-H-elongata_contig19748:1144..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19748 1145..1398 +
1691679286.910836-CDS-H-elongata_contig19748:1144..13981691679286.910836-CDS-H-elongata_contig19748:1144..1398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19748 1145..1398 +
1622930116.5572677-CDS-H-elongata_contig19748:1802..21211622930116.5572677-CDS-H-elongata_contig19748:1802..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19748 1803..2121 +
1691679286.9252644-CDS-H-elongata_contig19748:1802..21211691679286.9252644-CDS-H-elongata_contig19748:1802..2121Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19748 1803..2121 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19748.5511.1prot_H-elongata_contig19748.5511.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19748 1145..2121 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19748.5511.1

>prot_H-elongata_contig19748.5511.1 ID=prot_H-elongata_contig19748.5511.1|Name=mRNA_H-elongata_contig19748.5511.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=191bp
KEAEKPLRLPTGMVMGVPSLGGQCVYVGVPIDDDVPPGVGHGASWAEGAR
FGDLYSDVARGAVSDLAGANKAAKMSARRDNDQLRFTTAQARARAEEDER
ALEVARLNAKRRDAEGIDMRPHPGNRFKPEPGYDKADQRGEKASTFGGAS
GKARDSSKDKYEEDGLKKTQASKDRDEEKTYSLGGYKVAEY
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mRNA from alignment at H-elongata_contig19748:1145..2123+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19748.5511.1 ID=mRNA_H-elongata_contig19748.5511.1|Name=mRNA_H-elongata_contig19748.5511.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=979bp|location=Sequence derived from alignment at H-elongata_contig19748:1145..2123+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGCAGAGAAACCCCTACGATTGCCAACGGGCATGGTTATGGGAGT
GCCCAGTCTCGGTGGGCAGTGCGTCTACGTGGGCGTGCCTATCGATGACG
ACGTGCCGCCGGGGGTTGGTCACGGCGCGTCTTGGGCGGAAGGCGCGCGT
TTCGGCGATCTTTATAGCGACGTTGCTCGCGGGGCGGTCAGCGACCTGGC
GGGAGCGAACAAGGCCGCGAAAATGAGCGCTCGCCGCGACAACGATCAAT
TGAGGTGTGAGAAACGCAAATTCAAGAAAAGGCGTGCGCTACAAAATTTC
CTGAATTATTTGAGCGTTGCTTTCCTTTCGGTAGGCGAAGGTAACGTAGA
CGGTTAGGTAAAAGTGCGTGTCTGGGGGCATTTTTTGAGCCCGCGTGTGC
GTGCGTGGAAGCCCTTTCGCTTTGAATGCACGCGTCCTGCGTGGTCAGTG
GGACATCAGCGAGCTTAGCTTCGCAGATAATATGTCACATAAATCCCACG
CCACGATCCTATCGAGACAACGAGGTGCGAGTCTGCCTGTCCCCACGAGT
CGGGTTCGAGTTCAGGCGTCTTGCGTGGCCCTTTTCGTTGCCGTCCGATA
TAATTTCCCTTGGCAAATGACACGCCCCACGCCCCTATCCATTCGTTGGA
CGTAGCAGATTCACAACCGCCCAGGCACGAGCCAGGGCGGAGGAGGACGA
GCGGGCGCTCGAGGTCGCTCGACTTAACGCGAAGAGACGCGATGCCGAGG
GAATCGACATGCGGCCCCACCCGGGGAACCGCTTCAAGCCCGAGCCTGGA
TACGACAAGGCGGATCAACGCGGGGAGAAAGCGTCGACCTTTGGAGGGGC
CTCGGGTAAAGCTCGGGACTCGTCAAAGGACAAATATGAAGAGGATGGGT
TGAAAAAGACCCAGGCGAGTAAGGACAGAGACGAAGAAAAGACGTACTCC
CTGGGGGGTTACAAAGTCGCAGAGTACAA
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Coding sequence (CDS) from alignment at H-elongata_contig19748:1145..2123+

>mRNA_H-elongata_contig19748.5511.1 ID=mRNA_H-elongata_contig19748.5511.1|Name=mRNA_H-elongata_contig19748.5511.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1146bp|location=Sequence derived from alignment at H-elongata_contig19748:1145..2123+ (Himanthalia elongata Himel1 dioecious)
AAGGAGGCAGAGAAACCCCTACGATTGCCAACGGGCATGGTTATGGGAGT
GCCCAGTCTCGGTGGGCAGTGCGTCTACGTGGGCGTGCCTATCGATGACG
ACGTGCCGCCGGGGGTTGGTCACGGCGCGTCTTGGGCGGAAGGCGCGCGT
TTCGGCGATCTTTATAGCGACGTTGCTCGCGGGGCGGTCAGCGACCTGGC
GGGAGCGAACAAGGCCGCGAAAATGAGCGCTCGCCGCGACAACGATCAAT
TGAGAAGGAGGCAGAGAAACCCCTACGATTGCCAACGGGCATGGTTATGG
GAGTGCCCAGTCTCGGTGGGCAGTGCGTCTACGTGGGCGTGCCTATCGAT
GACGACGTGCCGCCGGGGGTTGGTCACGGCGCGTCTTGGGCGGAAGGCGC
GCGTTTCGGCGATCTTTATAGCGACGTTGCTCGCGGGGCGGTCAGCGACC
TGGCGGGAGCGAACAAGGCCGCGAAAATGAGCGCTCGCCGCGACAACGAT
CAATTGAGATTCACAACCGCCCAGGCACGAGCCAGGGCGGAGGAGGACGA
GCGGGCGCTCGAGGTCGCTCGACTTAACGCGAAGAGACGCGATGCCGAGG
GAATCGACATGCGGCCCCACCCGGGGAACCGCTTCAAGCCCGAGCCTGGA
TACGACAAGGCGGATCAACGCGGGGAGAAAGCGTCGACCTTTGGAGGGGC
CTCGGGTAAAGCTCGGGACTCGTCAAAGGACAAATATGAAGAGGATGGGT
TGAAAAAGACCCAGGCGAGTAAGGACAGAGACGAAGAAAAGACGTACTCC
CTGGGGGGTTACAAAGTCGCAGAGTACATTCACAACCGCCCAGGCACGAG
CCAGGGCGGAGGAGGACGAGCGGGCGCTCGAGGTCGCTCGACTTAACGCG
AAGAGACGCGATGCCGAGGGAATCGACATGCGGCCCCACCCGGGGAACCG
CTTCAAGCCCGAGCCTGGATACGACAAGGCGGATCAACGCGGGGAGAAAG
CGTCGACCTTTGGAGGGGCCTCGGGTAAAGCTCGGGACTCGTCAAAGGAC
AAATATGAAGAGGATGGGTTGAAAAAGACCCAGGCGAGTAAGGACAGAGA
CGAAGAAAAGACGTACTCCCTGGGGGGTTACAAAGTCGCAGAGTAC
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