mRNA_H-elongata_contig197422.5509.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197422.5509.1
Unique NamemRNA_H-elongata_contig197422.5509.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 8.820e-40
Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
            QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRS LVA+IVPDP+AAA WA ANGCG NAS+  LCR+P LKADVM +LET+AER+ LQRFE V  IH
Sbjct:  517 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSSLVAIIVPDPDAAAGWADANGCG-NASMVELCRNPGLKADVMLELETVAERAGLQRFEKVRAIH 611          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A7S1CRD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRD9_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.530e-25
Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNI 285
            QGEYVAPEK+EN++ +SP+VAQS+V+GDSL+S LVAV+VPDPE    WAKANG   + S+   C+   LKA + +D+  + E +KL+ FE V  I
Sbjct:   17 QGEYVAPEKIENVYARSPMVAQSFVYGDSLKSKLVAVVVPDPEVVEPWAKANGVAGS-SIEEWCKSDALKAAIFKDMARVGEEAKLRGFEVVRAI 110          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: H3GRK8_PHYRM (Long-chain-fatty-acid--CoA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRK8_PHYRM)

HSP 1 Score: 105 bits (262), Expect = 2.240e-24
Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGC-GSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
            QGEYVAPEK+E I+ +SPL+AQ++VHGDSL+SYLV++IVPD E  A WA+  G  G  AS   LC+   LKAD+ R++E++A   KL  FE V   H
Sbjct:  519 QGEYVAPEKIEAIYIKSPLIAQAFVHGDSLKSYLVSIIVPDVEIVAKWAQDKGLSGDEASFETLCKSAELKADITREMESLATEYKLVGFERVKKFH 615          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CE99_PYTIN (Long-chain-fatty-acid--CoA ligase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE99_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 7.850e-24
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
            QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG  + A +L  L   P LK  +++DL+T+A+R  L +FE V  +H HD
Sbjct:  522 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 621          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CIN5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIN5_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 8.070e-24
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
            QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG  + A +L  L   P LK  +++DL+T+A+R  L +FE V  +H HD
Sbjct:  441 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 540          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CAJ4_PYTIN (Long-chain-fatty-acid--CoA ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAJ4_PYTIN)

HSP 1 Score: 103 bits (258), Expect = 8.150e-24
Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
            QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG  + A +L  L   P LK  +++DL+T+A+R  L +FE V  +H HD
Sbjct:  876 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 975          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A662WMK9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMK9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.720e-23
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGC-GSNASLAALCR-----DPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
            QGEYVAPEK+E ++ +S L+AQ++VHGDSL++YLV +IVPDP+ AA WAK  G  G+ ASL ALC          KA++ R++E +A + KL RFE V   H
Sbjct:  517 QGEYVAPEKIEGVYIKSSLIAQAFVHGDSLQNYLVGIIVPDPDIAAKWAKEKGLTGAEASLEALCAPDSTTSAAFKAEIAREMEELATKHKLFRFERVQKFH 618          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.310e-22
Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASW-----AKANGCGSNAS--LAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
            QGEY+APEK+EN+H QSPLVAQS+V+GDSLRS LVAV+VPD +A  +W       A    SNA+  L ALC    L+  VM  L   A R+ LQRFE V  +H
Sbjct:  560 QGEYIAPEKIENVHVQSPLVAQSFVYGDSLRSALVAVVVPDADAVVAWHAARHGSAAAAASNAAVDLEALCASAALREAVMEQLAAAAARAGLQRFERVRRVH 662          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A1D1ZNH5_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNH5_AUXPR)

HSP 1 Score: 96.7 bits (239), Expect = 3.980e-22
Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNI 285
            QGEYVAPEK+ENI+ +SP VAQ +VHGDSLRS +V V+VPDPE    WAK  G   +  LA LC D ++KA + + L   A  +KL+ FE V++I
Sbjct:  163 QGEYVAPEKIENIYVRSPYVAQVFVHGDSLRSCIVGVVVPDPEVLLPWAKQRGLPQD--LATLCEDEQVKAMIQKSLSEEARVAKLKGFEQVADI 255          
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A7S1PTZ9_ALECA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PTZ9_ALECA)

HSP 1 Score: 98.6 bits (244), Expect = 6.180e-22
Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1
Query:    1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
            QGEYVAPEK+EN+H QS  V Q+YVHGDSL++ LV V+V DP+ AA+WAK +G   +    ALC+D   K  V+ DL+ I +R KL  FE V  +H
Sbjct:  539 QGEYVAPEKVENLHVQSKFVTQNYVHGDSLKTQLVCVVVVDPDVAAAWAKEHGVQKD--FPALCQDATFKKAVLADLQGIGKREKLAGFEIVKAVH 632          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCY7_ECTSI8.820e-4080.21Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarp... [more]
A0A7S1CRD9_9STRA1.530e-2553.68Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
H3GRK8_PHYRM2.240e-2454.64Long-chain-fatty-acid--CoA ligase n=1 Tax=Phytopht... [more]
A0A2D4CE99_PYTIN7.850e-2454.00Long-chain-fatty-acid--CoA ligase n=2 Tax=Pythium ... [more]
A0A2D4CIN5_PYTIN8.070e-2454.00Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A2D4CAJ4_PYTIN8.150e-2454.00Long-chain-fatty-acid--CoA ligase n=1 Tax=Pythium ... [more]
A0A662WMK9_9STRA3.720e-2351.96Long-chain-fatty-acid--CoA ligase n=1 Tax=Nothophy... [more]
A0A835ZFW5_9STRA1.310e-2254.37Long chain acyl-CoA synthetase n=1 Tax=Tribonema m... [more]
A0A1D1ZNH5_AUXPR3.980e-2253.68Uncharacterized protein (Fragment) n=1 Tax=Auxenoc... [more]
A0A7S1PTZ9_ALECA6.180e-2253.13Long-chain-fatty-acid--CoA ligase n=1 Tax=Alexandr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197422contigH-elongata_contig197422:178..801 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.9
Seed ortholog evalue1.1e-20
Seed eggNOG ortholog164328.Phyra79511
KEGG rclassRC00004,RC00014
KEGG koko:K01897
KEGG TC4.C.1.1
KEGG ReactionR01280
KEGG Pathwayko00061,ko00071,ko01100,ko01212,ko02024,ko03320,ko04146,ko04216,ko04714,ko04920,map00061,map00071,map01100,map01212,map02024,map03320,map04146,map04216,map04714,map04920
KEGG ModuleM00086
EggNOG free text desc.AMP-binding enzyme
EggNOG OGs3QF1N@4776,COG1022@1,KOG1256@2759
EC6.2.1.3
COG Functional cat.I
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01004,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size294
Cds size294
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.3211286-CDS-H-elongata_contig197422:177..3071622930116.3211286-CDS-H-elongata_contig197422:177..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197422 178..307 -
1691679286.7787066-CDS-H-elongata_contig197422:177..3071691679286.7787066-CDS-H-elongata_contig197422:177..307Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197422 178..307 -
1622930116.3330739-CDS-H-elongata_contig197422:637..8011622930116.3330739-CDS-H-elongata_contig197422:637..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197422 638..801 -
1691679286.8000152-CDS-H-elongata_contig197422:637..8011691679286.8000152-CDS-H-elongata_contig197422:637..801Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197422 638..801 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197422.5509.1prot_H-elongata_contig197422.5509.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197422 178..801 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197422.5509.1

>prot_H-elongata_contig197422.5509.1 ID=prot_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp
QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAK
ANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIHHD
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mRNA from alignment at H-elongata_contig197422:178..801-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197422.5509.1 ID=mRNA_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig197422:178..801- (Himanthalia elongata Himel1 dioecious)
CAGGGCGAATATGTCGCACCGGAAAAACTGGAAAACATCCACACCCAGAG CCCGCTCGTGGCCCAGTCTTATGTTCACGGTGACAGCCTGCGCAGCTACC TGGTGGCAGTCATCGTGCCCGACCCGGAGGCCGCCGCTTCCTGGGCCAAG GCGAACGGTTGCGGGTGAGTTTCCCCCCCGCCGATGAAAAGCGACGTTGA CGATGACATCAACACCGCGTGTTATGAAAGTATTAGTTGTGCGAAGGAAG ATCGATGGGGTCCGAGATATCGATTTGTGCCGCAGGGAGTTGTATAGCCA GGAAGGCTGTGGTTGATTCTTTCTGCATGAACCTTCTCTCCCACACGGCT GTGGAAAACGGGAACAAAAATAGTTGGAACCTTTCGACAAAGTGCGTGCA AAAGGGATCGTATGAAAGACACCCGATCGGATCGCTTCACCACGAAGACC TCTATTTGTCGCCCGTGCTTCTCATCGTGAATGGTGCCGGGAAGCAGTAA TGCCTCCTTGGCAGCGCTGTGTCGAGACCCGAGGCTAAAAGCGGACGTGA TGCGAGATTTGGAGACGATCGCGGAGCGCTCGAAGCTGCAGCGCTTTGAA CATGTGAGCAACATCCATCACGAC
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Coding sequence (CDS) from alignment at H-elongata_contig197422:178..801-

>mRNA_H-elongata_contig197422.5509.1 ID=mRNA_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig197422:178..801- (Himanthalia elongata Himel1 dioecious)
CAGGGCGAATATGTCGCACCGGAAAAACTGGAAAACATCCACACCCAGAG
CCCGCTCGTGGCCCAGTCTTATGTTCACGGTGACAGCCTGCGCAGCTACC
TGGTGGCAGTCATCGTGCCCGACCCGGAGGCCGCCGCTTCCTGGGCCAAG
GCGAACGGTTGCGGCAGGGCGAATATGTCGCACCGGAAAAACTGGAAAAC
ATCCACACCCAGAGCCCGCTCGTGGCCCAGTCTTATGTTCACGGTGACAG
CCTGCGCAGCTACCTGGTGGCAGTCATCGTGCCCGACCCGGAGGCCGCCG
CTTCCTGGGCCAAGGCGAACGGTTGCGGCAGTAATGCCTCCTTGGCAGCG
CTGTGTCGAGACCCGAGGCTAAAAGCGGACGTGATGCGAGATTTGGAGAC
GATCGCGGAGCGCTCGAAGCTGCAGCGCTTTGAACATGTGAGCAACATCC
ATCACGACCAGTAATGCCTCCTTGGCAGCGCTGTGTCGAGACCCGAGGCT
AAAAGCGGACGTGATGCGAGATTTGGAGACGATCGCGGAGCGCTCGAAGC
TGCAGCGCTTTGAACATGTGAGCAACATCCATCACGAC
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