mRNA_H-elongata_contig197422.5509.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: D8LCY7_ECTSI (Long-chain-fatty-acid--CoA ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCY7_ECTSI) HSP 1 Score: 148 bits (374), Expect = 8.820e-40 Identity = 77/96 (80.21%), Postives = 84/96 (87.50%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRS LVA+IVPDP+AAA WA ANGCG NAS+ LCR+P LKADVM +LET+AER+ LQRFE V IH
Sbjct: 517 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSSLVAIIVPDPDAAAGWADANGCG-NASMVELCRNPGLKADVMLELETVAERAGLQRFEKVRAIH 611
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A7S1CRD9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CRD9_9STRA) HSP 1 Score: 101 bits (252), Expect = 1.530e-25 Identity = 51/95 (53.68%), Postives = 69/95 (72.63%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNI 285
QGEYVAPEK+EN++ +SP+VAQS+V+GDSL+S LVAV+VPDPE WAKANG + S+ C+ LKA + +D+ + E +KL+ FE V I
Sbjct: 17 QGEYVAPEKIENVYARSPMVAQSFVYGDSLKSKLVAVVVPDPEVVEPWAKANGVAGS-SIEEWCKSDALKAAIFKDMARVGEEAKLRGFEVVRAI 110
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: H3GRK8_PHYRM (Long-chain-fatty-acid--CoA ligase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRK8_PHYRM) HSP 1 Score: 105 bits (262), Expect = 2.240e-24 Identity = 53/97 (54.64%), Postives = 69/97 (71.13%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGC-GSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
QGEYVAPEK+E I+ +SPL+AQ++VHGDSL+SYLV++IVPD E A WA+ G G AS LC+ LKAD+ R++E++A KL FE V H
Sbjct: 519 QGEYVAPEKIEAIYIKSPLIAQAFVHGDSLKSYLVSIIVPDVEIVAKWAQDKGLSGDEASFETLCKSAELKADITREMESLATEYKLVGFERVKKFH 615
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CE99_PYTIN (Long-chain-fatty-acid--CoA ligase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE99_PYTIN) HSP 1 Score: 103 bits (258), Expect = 7.850e-24 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG + A +L L P LK +++DL+T+A+R L +FE V +H HD
Sbjct: 522 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 621
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CIN5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CIN5_PYTIN) HSP 1 Score: 103 bits (258), Expect = 8.070e-24 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG + A +L L P LK +++DL+T+A+R L +FE V +H HD
Sbjct: 441 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 540
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A2D4CAJ4_PYTIN (Long-chain-fatty-acid--CoA ligase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAJ4_PYTIN) HSP 1 Score: 103 bits (258), Expect = 8.150e-24 Identity = 54/100 (54.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNA-SLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH-HD 294
QGEYVAPEK+EN++ +SPLVAQ +VHG SL++YLV V VPD +A A WA+ANG + A +L L P LK +++DL+T+A+R L +FE V +H HD
Sbjct: 876 QGEYVAPEKIENVYVKSPLVAQIFVHGHSLQNYLVGVAVPDADAVAEWARANGHSAEADALRELYASPALKQAILKDLDTLAQRFGLMKFERVQKLHLHD 975
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A662WMK9_9STRA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMK9_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.720e-23 Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGC-GSNASLAALCR-----DPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
QGEYVAPEK+E ++ +S L+AQ++VHGDSL++YLV +IVPDP+ AA WAK G G+ ASL ALC KA++ R++E +A + KL RFE V H
Sbjct: 517 QGEYVAPEKIEGVYIKSSLIAQAFVHGDSLQNYLVGIIVPDPDIAAKWAKEKGLTGAEASLEALCAPDSTTSAAFKAEIAREMEELATKHKLFRFERVQKFH 618
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A835ZFW5_9STRA (Long chain acyl-CoA synthetase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFW5_9STRA) HSP 1 Score: 100 bits (249), Expect = 1.310e-22 Identity = 56/103 (54.37%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASW-----AKANGCGSNAS--LAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
QGEY+APEK+EN+H QSPLVAQS+V+GDSLRS LVAV+VPD +A +W A SNA+ L ALC L+ VM L A R+ LQRFE V +H
Sbjct: 560 QGEYIAPEKIENVHVQSPLVAQSFVYGDSLRSALVAVVVPDADAVVAWHAARHGSAAAAASNAAVDLEALCASAALREAVMEQLAAAAARAGLQRFERVRRVH 662
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A1D1ZNH5_AUXPR (Uncharacterized protein (Fragment) n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D1ZNH5_AUXPR) HSP 1 Score: 96.7 bits (239), Expect = 3.980e-22 Identity = 51/95 (53.68%), Postives = 66/95 (69.47%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNI 285
QGEYVAPEK+ENI+ +SP VAQ +VHGDSLRS +V V+VPDPE WAK G + LA LC D ++KA + + L A +KL+ FE V++I
Sbjct: 163 QGEYVAPEKIENIYVRSPYVAQVFVHGDSLRSCIVGVVVPDPEVLLPWAKQRGLPQD--LATLCEDEQVKAMIQKSLSEEARVAKLKGFEQVADI 255
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Match: A0A7S1PTZ9_ALECA (Long-chain-fatty-acid--CoA ligase n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1PTZ9_ALECA) HSP 1 Score: 98.6 bits (244), Expect = 6.180e-22 Identity = 51/96 (53.12%), Postives = 66/96 (68.75%), Query Frame = 1
Query: 1 QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKANGCGSNASLAALCRDPRLKADVMRDLETIAERSKLQRFEHVSNIH 288
QGEYVAPEK+EN+H QS V Q+YVHGDSL++ LV V+V DP+ AA+WAK +G + ALC+D K V+ DL+ I +R KL FE V +H
Sbjct: 539 QGEYVAPEKVENLHVQSKFVTQNYVHGDSLKTQLVCVVVVDPDVAAAWAKEHGVQKD--FPALCQDATFKKAVLADLQGIGKREKLAGFEIVKAVH 632 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197422.5509.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197422.5509.1 >prot_H-elongata_contig197422.5509.1 ID=prot_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=98bp QGEYVAPEKLENIHTQSPLVAQSYVHGDSLRSYLVAVIVPDPEAAASWAKback to top mRNA from alignment at H-elongata_contig197422:178..801- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197422.5509.1 ID=mRNA_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig197422:178..801- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197422:178..801- >mRNA_H-elongata_contig197422.5509.1 ID=mRNA_H-elongata_contig197422.5509.1|Name=mRNA_H-elongata_contig197422.5509.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=588bp|location=Sequence derived from alignment at H-elongata_contig197422:178..801- (Himanthalia elongata Himel1 dioecious)back to top |