mRNA_H-elongata_contig197328.5504.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE) HSP 1 Score: 124 bits (312), Expect = 2.250e-31 Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + + KST+ RA + RLF++L G S+GGN + ++ D+ TR+ V FLKHKSDA A + DY A ++ + RTDGGGE++GQF R+ GIK+E TPP TP+Y+GV ERALGLL
Sbjct: 168 PCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLL 305
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE) HSP 1 Score: 123 bits (309), Expect = 5.160e-30 Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S + V KST RA ++ R+++DL G S+GGN + ++ D+F+R+ V FLKHKSDA L + DY +G+ ++ I RTDGGGE++GQF R+ GIK+E TPP+TP+Y+GV ERALG L
Sbjct: 619 PCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE) HSP 1 Score: 121 bits (304), Expect = 2.180e-29 Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + V KST +RA + R+++DL G S+GGN + ++ D+F+R+ V FLKHKSDA + DY EG+ K+ I RTDGGGE++GQF R+ GIK+E TPP+TP Y V ERALGL+
Sbjct: 455 PCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLI 592
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE) HSP 1 Score: 117 bits (294), Expect = 5.420e-28 Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIG--IIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + V K T RA + R+++DL G S+GGN + ++ D+F+R+ V FLKHKSDA + DY G+ I R DGGGE++GQF R+ GIK+E TPP+TP+Y+GV ERALGL+
Sbjct: 674 PCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLI 811
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE) HSP 1 Score: 115 bits (288), Expect = 3.060e-27 Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + V K T RA ++ R+++DL G S+GGN + ++ D+F+R+ FLKHKSDA + DY +G+ ++ RTDGGGE++GQF R+ GIK E TPP+TP+Y+ V ERALGL+
Sbjct: 165 PCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLI 302
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE) HSP 1 Score: 115 bits (287), Expect = 4.190e-27 Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query: 43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
V KST RA ++ R+++DL G S+GGN + ++ D+F+R+ V FLKHKSDA + DY +G+ ++ I RTDGGGE++GQF R+ GIK E TPP+TP+Y+GV ERALGL+
Sbjct: 9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLI 132
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE) HSP 1 Score: 107 bits (267), Expect = 1.810e-26 Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query: 43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
V KST RA ++ R+++DL G S+G N + ++ D+F+R+ V FLKHKSDA + DY +G+ ++ I RTDGGGE++GQF R+ GIK+E TPP+TP+ +G ER LGL+
Sbjct: 31 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGANWYTLIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKNNGTAERTLGLI 154
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE) HSP 1 Score: 110 bits (275), Expect = 2.860e-26 Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 1
Query: 43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
V KST RAD++ R+++DL G S+G + + ++ D+F+R+ V FLKHKSDA + DY E ++ I RTD GGE++GQF R+ GIK+E TPP+TP+Y+ V ERALGL+
Sbjct: 203 VQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLI 326
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE) HSP 1 Score: 112 bits (279), Expect = 4.680e-26 Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + V KST RA ++ R+++DL G S+GGN + ++ D+ +R+ V F H SDA + DY +G+ K+ I RTDGGGE++GQF R+ GIK+E TPP+TP+Y+GV ERALGL+
Sbjct: 373 PCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADY-RTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLI 509
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.930e-26 Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query: 1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYF---APEGLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
PC+ CS S+ + V KST RA R +++DL S+GG+ + ++ D+F+R+ FLKHKSDA + DY AP ++ I RTDGGGE++GQF R+ GIK+E TPP+T +Y+GV ERALGL+
Sbjct: 168 PCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAP--CEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLI 305 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig197328.5504.1 >prot_H-elongata_contig197328.5504.1 ID=prot_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMback to top mRNA from alignment at H-elongata_contig197328:656..1069+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig197328.5504.1 ID=mRNA_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig197328:656..1069+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig197328:656..1069+ >mRNA_H-elongata_contig197328.5504.1 ID=mRNA_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig197328:656..1069+ (Himanthalia elongata Himel1 dioecious)back to top |