mRNA_H-elongata_contig197328.5504.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197328.5504.1
Unique NamemRNA_H-elongata_contig197328.5504.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5LL52_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL52_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.250e-31
Identity = 65/138 (47.10%), Postives = 89/138 (64.49%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   + KST+ RA  +  RLF++L G     S+GGN + ++  D+ TR+  V FLKHKSDA  A    + DY A     ++ + RTDGGGE++GQF    R+ GIK+E TPP TP+Y+GV ERALGLL
Sbjct:  168 PCLGCSMSKGQVKPISKSTDTRAANKLFRLFLNLGGRMQFKSIGGNWYTLIIRDDCTRWTRVFFLKHKSDAAAAFEQYLADYRAETVPCEVFVARTDGGGEFQGQFAEVCRRSGIKQEFTPPNTPKYNGVAERALGLL 305          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JM30_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM30_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 5.160e-30
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S  +   V KST  RA ++  R+++DL G     S+GGN + ++  D+F+R+  V FLKHKSDA   L   + DY   +G+  ++ I RTDGGGE++GQF    R+ GIK+E TPP+TP+Y+GV ERALG L
Sbjct:  619 PCLGCSMSTGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGLEKFLADY-RTKGVPCEVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGAL 756          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KPZ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPZ8_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.180e-29
Identity = 65/139 (46.76%), Postives = 89/139 (64.03%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   V KST +RA  +  R+++DL G     S+GGN + ++  D+F+R+  V FLKHKSDA       + DY   EG+  K+ I RTDGGGE++GQF    R+ GIK+E TPP+TP Y  V ERALGL+
Sbjct:  455 PCLGCSMSKGQVKPVQKSTSSRAVTKIFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTEGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQELTPPHTPIYKDVAERALGLI 592          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 5.420e-28
Identity = 62/139 (44.60%), Postives = 86/139 (61.87%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIG--IIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   V K T  RA +   R+++DL G     S+GGN + ++  D+F+R+  V FLKHKSDA       + DY    G+     I R DGGGE++GQF    R+ GIK+E TPP+TP+Y+GV ERALGL+
Sbjct:  674 PCLGCSMSKAQVKPVQKCTSTRAVQNFFRVYLDLEGTMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTNGVPCEDFIARADGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLI 811          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5L1A7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1A7_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 3.060e-27
Identity = 60/139 (43.17%), Postives = 87/139 (62.59%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   V K T  RA ++  R+++DL G     S+GGN + ++  D+F+R+    FLKHKSDA       + DY   +G+  ++   RTDGGGE++GQF    R+ GIK E TPP+TP+Y+ V ERALGL+
Sbjct:  165 PCLGCSMSKGQVKPVQKGTSTRAVKKLCRVYLDLEGKMKTRSIGGNWYKLIIRDDFSRWTRGFFLKHKSDAAIGFEKFLADY-RTKGIPCEVYFARTDGGGEFQGQFAEVCRRHGIKEEFTPPHTPKYNSVAERALGLI 302          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KAM7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAM7_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.190e-27
Identity = 59/125 (47.20%), Postives = 83/125 (66.40%), Query Frame = 1
Query:   43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            V KST  RA ++  R+++DL G     S+GGN + ++  D+F+R+  V FLKHKSDA       + DY   +G+  ++ I RTDGGGE++GQF    R+ GIK E TPP+TP+Y+GV ERALGL+
Sbjct:    9 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVCIARTDGGGEFQGQFAELCRRHGIKEEFTPPHTPKYNGVAERALGLI 132          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5K2Y3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y3_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 1.810e-26
Identity = 55/125 (44.00%), Postives = 80/125 (64.00%), Query Frame = 1
Query:   43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            V KST  RA ++  R+++DL G     S+G N + ++  D+F+R+  V FLKHKSDA       + DY   +G+  ++ I RTDGGGE++GQF    R+ GIK+E TPP+TP+ +G  ER LGL+
Sbjct:   31 VQKSTSTRAVKKLFRVYLDLGGKMKTRSIGANWYTLIMRDHFSRWTRVFFLKHKSDAAVGFEKFLADY-RTKGVPCEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKNNGTAERTLGLI 154          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5KGJ8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 2.860e-26
Identity = 56/124 (45.16%), Postives = 80/124 (64.52%), Query Frame = 1
Query:   43 VPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPE-GLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            V KST  RAD++  R+++DL G     S+G + + ++  D+F+R+  V FLKHKSDA       + DY   E   ++ I RTD GGE++GQF    R+ GIK+E TPP+TP+Y+ V ERALGL+
Sbjct:  203 VQKSTSTRADKKLFRVYLDLGGKMKTRSIGDHWYTLMIRDDFSRWTRVFFLKHKSDAAVGFEKFLVDYRTKEVPCEVYITRTDDGGEFQGQFAEVFRRHGIKQEFTPPHTPKYNDVAERALGLI 326          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JIN8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIN8_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.680e-26
Identity = 61/139 (43.88%), Postives = 88/139 (63.31%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGL--KIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   V KST  RA ++  R+++DL G     S+GGN + ++  D+ +R+  V F  H SDA       + DY   +G+  K+ I RTDGGGE++GQF    R+ GIK+E TPP+TP+Y+GV ERALGL+
Sbjct:  373 PCLGCSMSKGQVKPVQKSTSTRAVKKLFRVYLDLGGKMKTRSIGGNWYTLIIRDDCSRWTCVFFFNH-SDAAVGFEKSLADY-RTKGVPCKVYIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTPKYNGVAERALGLI 509          
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Match: A0A6H5JZ88_9PHAE (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ88_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 6.930e-26
Identity = 61/140 (43.57%), Postives = 86/140 (61.43%), Query Frame = 1
Query:    1 PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVMLRIDNFTRFKMVRFLKHKSDATNALRDIINDYF---APEGLKIGIIRTDGGGEWRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLL 411
            PC+ CS S+ +   V KST  RA  R   +++DL       S+GG+ + ++  D+F+R+    FLKHKSDA       + DY    AP   ++ I RTDGGGE++GQF    R+ GIK+E TPP+T +Y+GV ERALGL+
Sbjct:  168 PCLGCSMSKGQVKPVQKSTSTRAVIRIFHVYLDLGRNMKTRSIGGSWYTLIIRDDFSRWTRDFFLKHKSDAAVGFEKFLADYRTKGAP--CEVHIARTDGGGEFQGQFAEVCRRHGIKQEFTPPHTQKYNGVAERALGLI 305          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197328.5504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL52_9PHAE2.250e-3147.10Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JM30_9PHAE5.160e-3046.76Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KPZ8_9PHAE2.180e-2946.76Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JAQ2_9PHAE5.420e-2844.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1A7_9PHAE3.060e-2743.17Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KAM7_9PHAE4.190e-2747.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K2Y3_9PHAE1.810e-2644.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGJ8_9PHAE2.860e-2645.16Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JIN8_9PHAE4.680e-2643.88Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JZ88_9PHAE6.930e-2643.57Integrase catalytic domain-containing protein (Fra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197328contigH-elongata_contig197328:656..1069 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score89.4
Seed ortholog evalue1.5e-15
Seed eggNOG ortholog400682.PAC_15703055
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size414
Cds size414
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930116.0025814-CDS-H-elongata_contig197328:655..10691622930116.0025814-CDS-H-elongata_contig197328:655..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197328 656..1069 +
1691679286.6446743-CDS-H-elongata_contig197328:655..10691691679286.6446743-CDS-H-elongata_contig197328:655..1069Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197328 656..1069 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197328.5504.1prot_H-elongata_contig197328.5504.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197328 656..1069 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197328.5504.1

>prot_H-elongata_contig197328.5504.1 ID=prot_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=138bp
PCVHCSESRVRRYAVPKSTENRADRRAGRLFIDLSGPFHETSLGGNRFVM
LRIDNFTRFKMVRFLKHKSDATNALRDIINDYFAPEGLKIGIIRTDGGGE
WRGQFLSFLRKLGIKRESTPPYTPQYDGVVERALGLLR
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mRNA from alignment at H-elongata_contig197328:656..1069+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197328.5504.1 ID=mRNA_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=414bp|location=Sequence derived from alignment at H-elongata_contig197328:656..1069+ (Himanthalia elongata Himel1 dioecious)
CCATGCGTACATTGCTCCGAATCTAGGGTGAGGCGATACGCCGTGCCTAA ATCCACGGAGAATCGAGCTGACAGGCGCGCGGGACGGCTGTTTATTGATC TCTCAGGCCCCTTTCACGAGACGTCTCTCGGAGGAAACAGATTCGTCATG CTGCGCATTGACAACTTCACCCGATTCAAAATGGTTCGTTTCCTCAAGCA CAAGAGCGACGCCACGAATGCGTTAAGGGACATAATCAACGACTACTTCG CGCCCGAGGGCCTCAAGATCGGCATCATCCGTACGGACGGTGGGGGAGAA TGGCGCGGCCAGTTCCTGTCTTTCCTGCGTAAGCTCGGAATCAAGCGCGA GTCCACACCCCCATATACCCCCCAATACGATGGCGTCGTGGAGCGCGCTC TGGGGCTACTGCGC
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Coding sequence (CDS) from alignment at H-elongata_contig197328:656..1069+

>mRNA_H-elongata_contig197328.5504.1 ID=mRNA_H-elongata_contig197328.5504.1|Name=mRNA_H-elongata_contig197328.5504.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=828bp|location=Sequence derived from alignment at H-elongata_contig197328:656..1069+ (Himanthalia elongata Himel1 dioecious)
CCATGCGTACATTGCTCCGAATCTAGGGTGAGGCGATACGCCGTGCCTAA
ATCCACGGAGAATCGAGCTGACAGGCGCGCGGGACGGCTGTTTATTGATC
TCTCAGGCCCCTTTCACGAGACGTCTCTCGGAGGAAACAGATTCGTCATG
CTGCGCATTGACAACTTCACCCGATTCAAAATGGTTCGTTTCCTCAAGCA
CAAGAGCGACGCCACGAATGCGTTAAGGGACATAATCAACGACTACTTCG
CGCCCGAGGGCCTCAAGATCGGCATCATCCGTACGGACGGTGGGGGAGAA
TGGCGCGGCCAGTTCCTGTCTTTCCTGCGTAAGCTCGGAATCAAGCGCGA
GTCCACACCCCCATATACCCCCCAATACGATGGCGTCGTGGAGCGCGCTC
TGGGGCTACTGCGCCCATGCGTACATTGCTCCGAATCTAGGGTGAGGCGA
TACGCCGTGCCTAAATCCACGGAGAATCGAGCTGACAGGCGCGCGGGACG
GCTGTTTATTGATCTCTCAGGCCCCTTTCACGAGACGTCTCTCGGAGGAA
ACAGATTCGTCATGCTGCGCATTGACAACTTCACCCGATTCAAAATGGTT
CGTTTCCTCAAGCACAAGAGCGACGCCACGAATGCGTTAAGGGACATAAT
CAACGACTACTTCGCGCCCGAGGGCCTCAAGATCGGCATCATCCGTACGG
ACGGTGGGGGAGAATGGCGCGGCCAGTTCCTGTCTTTCCTGCGTAAGCTC
GGAATCAAGCGCGAGTCCACACCCCCATATACCCCCCAATACGATGGCGT
CGTGGAGCGCGCTCTGGGGCTACTGCGC
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