mRNA_H-elongata_contig197113.5502.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197113.5502.1
Unique NamemRNA_H-elongata_contig197113.5502.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig197113.5502.1 vs. uniprot
Match: D7G8U4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8U4_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.660e-14
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:    1 QRVRPLVEIREFTRLAYVMALVGSARDTPLASRAVAAMLVRHWCDLEPCRLLQK 162
            +R R L+EI + TRL YVM LVG+ RD PLASRA+AAMLV HWCD  PC  LQK
Sbjct:   70 ERRRGLLEIDKATRLCYVMMLVGTGRDPPLASRAIAAMLVDHWCDKGPCAFLQK 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197113.5502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G8U4_ECTSI1.660e-1466.67Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197113contigH-elongata_contig197113:117..293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_004250.1
Exons1
Model size177
Cds size177
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.8820803-CDS-H-elongata_contig197113:116..2931622930115.8820803-CDS-H-elongata_contig197113:116..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197113 117..293 -
1691679286.6005409-CDS-H-elongata_contig197113:116..2931691679286.6005409-CDS-H-elongata_contig197113:116..293Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197113 117..293 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197113.5502.1prot_H-elongata_contig197113.5502.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197113 117..293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197113.5502.1

>prot_H-elongata_contig197113.5502.1 ID=prot_H-elongata_contig197113.5502.1|Name=mRNA_H-elongata_contig197113.5502.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=59bp
QRVRPLVEIREFTRLAYVMALVGSARDTPLASRAVAAMLVRHWCDLEPCR
LLQKVRLG*
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mRNA from alignment at H-elongata_contig197113:117..293-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197113.5502.1 ID=mRNA_H-elongata_contig197113.5502.1|Name=mRNA_H-elongata_contig197113.5502.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=177bp|location=Sequence derived from alignment at H-elongata_contig197113:117..293- (Himanthalia elongata Himel1 dioecious)
CAGCGGGTTCGACCCCTGGTCGAGATCCGAGAGTTTACGCGGTTGGCCTA
CGTCATGGCCCTGGTCGGCAGCGCACGCGACACGCCCCTGGCCTCGAGGG
CGGTAGCTGCCATGCTTGTGAGGCACTGGTGCGATCTGGAACCGTGCAGG
CTTCTACAAAAGGTTAGGCTTGGTTAA
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Coding sequence (CDS) from alignment at H-elongata_contig197113:117..293-

>mRNA_H-elongata_contig197113.5502.1 ID=mRNA_H-elongata_contig197113.5502.1|Name=mRNA_H-elongata_contig197113.5502.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=354bp|location=Sequence derived from alignment at H-elongata_contig197113:117..293- (Himanthalia elongata Himel1 dioecious)
CAGCGGGTTCGACCCCTGGTCGAGATCCGAGAGTTTACGCGGTTGGCCTA
CGTCATGGCCCTGGTCGGCAGCGCACGCGACACGCCCCTGGCCTCGAGGG
CGGTAGCTGCCATGCTTGTGAGGCACTGGTGCGATCTGGAACCGTGCAGG
CTTCTACAAAAGGTTAGGCTTGGTTAACAGCGGGTTCGACCCCTGGTCGA
GATCCGAGAGTTTACGCGGTTGGCCTACGTCATGGCCCTGGTCGGCAGCG
CACGCGACACGCCCCTGGCCTCGAGGGCGGTAGCTGCCATGCTTGTGAGG
CACTGGTGCGATCTGGAACCGTGCAGGCTTCTACAAAAGGTTAGGCTTGG
TTAA
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