mRNA_H-elongata_contig19709.5499.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE) HSP 1 Score: 240 bits (612), Expect = 8.230e-73 Identity = 154/399 (38.60%), Postives = 188/399 (47.12%), Query Frame = 1
Query: 4 PEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPR-TDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNEN------------------------------------------------------------------GQAD--------------------------------------------------------SLVVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
PEF+E WR++G T+ +E G++DSDG +L G QG DDTF + S DFAAVKLEGASG V+W WT S GS + + +DTDSNNDV++GG G W ++N + G+ D ++VVK SGTDG+V+WEYSP SFT DV +VDVD Q DVY+AGG DA N G + E+PVV+KL GA G + W Y G TS F +AVD TTGW+VGAG T GTWL G AQGG DFAAVVLDG G+EL RYQ+GT D + F GFDS G L GG
Sbjct: 6 PEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVGTQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGS---EADVFLASDTDSNNDVIMGGTTEGYWSSSNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGDSDFFVIKLDGTDGSEMWTVQGGESTSFDAFHNVKVDSGGDLIAVGIGGDEDAVNVVVKFSGTDGAVLWEYSPVTSFTHDVPQSVDVDTQDDVYIAGGYDALNLHGILAETPVVLKLDGATGDVVWTYEGVNTSSAGFSRIAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDYLSFVGFDSVGGLIIGG 401
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.430e-71 Identity = 159/408 (38.97%), Postives = 192/408 (47.06%), Query Frame = 1
Query: 1 MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRT-DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATN-------------------------------------------------------------------------------------------------ENGQADSL--------------------------VVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSGLSE 849
PEF+E WR++G T+ +E + G++D DG+ +L G QG DDTF + S DFAAVKLEGASG V+W WT S GS + ++ DTDSNND+V+GG G W ++N E+ DSL VVK SGTDG+V+WEYSP S T DV +VDVD Q DVY+AGG DA N G + E+PVV+KL GA G + W Y G TS FRSVAVD TTGW+VGAG T GTWL G AQGG DFAAVVLDG G+EL RYQ+GT D +KF GFDS G L GG + E
Sbjct: 5 FPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAV---DTDSNNDIVMGGRTEGYWSSSNPDSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIVVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIAGGYDALNLQGTLAETPVVLKLDGATGDVVWTYEGVATSSAGFRSVAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDSLKFVGFDSVGGLILGGSWTDTGE 409
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI) HSP 1 Score: 238 bits (608), Expect = 6.990e-71 Identity = 156/401 (38.90%), Postives = 190/401 (47.38%), Query Frame = 1
Query: 1 MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRT-DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATN-------------------------------------------------------------------------------------------------ENGQADSL--------------------------VVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
+PEF+E WR++G T+ +E + G++D DG+ +L G QG T DDTF + S DFAAVKLEGASG V+W WT S GS + ++ DTDSNND+V+GG G W ++N E+ DSL VVK SGTDG+V+WEYSP S T DV +VDVD Q DVY+AGG DA N G + E+PVV+KL GA G + W Y G TTS VAVD TTGW+VGAG TEGTWL G AQGG DFAAVVLDG G+EL RYQ+GT + + F GFDS G L GG
Sbjct: 5 IPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGS---EADTFLAVDTDSNNDIVMGGRTEGYWSSSNPDTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIAVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIAGGYDALNLQGTLAETPVVLKLDGATGDVVWTYEGVTTSSAGLICVAVDLTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDEYLSFVGFDSVGGLILGG 402
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI) HSP 1 Score: 218 bits (554), Expect = 1.430e-63 Identity = 138/355 (38.87%), Postives = 165/355 (46.48%), Query Frame = 1
Query: 136 DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNEN-----------------------------------------------------------------------GQADSLVVKLSGTDGS----------------------------------------------------VIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
DDTF + S DFAAVKL+GASG ++W WTD S GS+ + DTDSN+DVV+GG G W ++N + G +D V+KL GTDGS ++WEYSP SFT DV +VDVD Q DVY+AGG DA N GD+ E+PVV+KL GA G + W Y G TSR F VAVDPTTGW+VGAG TEGTWL G AQGG DFAAVVLDGD G+E+ RYQ+GT D + F GFD+ G L GG
Sbjct: 55 DDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLF---LAGDTDSNDDVVMGGRTEGYWSSSNPDSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGDSDFFVIKLDGTDGSEIWTVQGGESTSYDFFVDVKVDSAGDLVAIGIGGDEDAINVVVVKFSGIDGSILWEYSPVTSFTHDVPESVDVDTQDDVYLAGGYDALNLEGDLAETPVVLKLDGATGDVVWTYEGVATSRAGFFGVAVDPTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGDTGDEIGRYQDGTTDDDYLSFVGFDAVGGLILGG 406
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD2_ECTSI) HSP 1 Score: 196 bits (498), Expect = 3.580e-55 Identity = 119/287 (41.46%), Postives = 163/287 (56.79%), Query Frame = 1
Query: 16 EEWRYEGGTSENEAAHGG-------SLDSDGSFILAG------VQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTS 837
E WRY+ S + + G ++DS + +L G V GV V D F A+KL+G +G +W + G E + GA DS+ D+V GY N DA+ + + LVVKLSG+DGSV+WEY+P + + V H+VD+DD+ VYVAGGE A N G + + VV+KL G +G W Y G + S+A DP TGW+VGAG +G W+ G +QGG DFAAVVLDGD G EL R+Q+GT G DV++F FD +G F GG+++
Sbjct: 62 EVWRYQAAASTSSSGGYGVSYVLGVAVDSTNNPVLVGTTYNSLVDGVGVPGDWD----------FFAIKLDGVTGGELW----RVQGGVAFTREGLLGAKVDSSGDLVAAGYAA-NEDAS----ELNFLVVKLSGSDGSVLWEYAPSTASGGVFHSVDLDDRSHVYVAGGEGAPNFQGKVGTTAVVLKLDGESGVERWSYRGTGGDGIMLNSIAADPITGWVVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFST 329
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE) HSP 1 Score: 192 bits (489), Expect = 1.690e-53 Identity = 104/224 (46.43%), Postives = 141/224 (62.95%), Query Frame = 1
Query: 166 DFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTS 837
DF A+KL+G +G +W + G E + GA DS+ D+V GY N DA+ + + LVVKLSG+DGSV+WEY+P + + V H+VD+DD+ VYVAGGE A N G + + VV+KL G +G W Y G + SVA DP TGW+VGAG +G W+ G + GG D+AAVVLDGD G EL R+Q+GT G DV++F FD +G F GG+++
Sbjct: 187 DFFAIKLDGMTGGELW----RVQGGVAFTREGLLGAKVDSSGDLVAAGYAA-NEDAS----ELNFLVVKLSGSDGSVLWEYAPSAASGGVFHSVDLDDRNHVYVAGGEGAPNFQGKVGTTAVVLKLDGESGVERWSYRGTGGDGIMLNSVAADPITGWVVGAGGAQGNWVEGASVGGFDYAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFST 401
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5LD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD60_9PHAE) HSP 1 Score: 182 bits (462), Expect = 2.520e-51 Identity = 109/218 (50.00%), Postives = 130/218 (59.63%), Query Frame = 1
Query: 166 DFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGAL 816
DF A KL+G G +W + G + +S +S D+V G ++G+ A + VVKLSG DG V+WEYSP S T DV H+VDVD Q DV V G DA N G E+PVV+KL GA G + W Y G TS F +AVD TTGW+VGAG TEGTW+ G AQGG D AAV+LDG G EL RYQNGT D + FAGFDSAG
Sbjct: 120 DFFATKLDGTDGSEIWT----TQGGASTSFDSFREVVVESTGDLVAVG-ISGDVYAIS------IFVVKLSGIDGIVLWEYSPVTSLTHDVPHSVDVDAQDDVNVVGVYDALNLQGSTAETPVVLKLDGATGDVGWTYEGMATSGDGFYDLAVDLTTGWVVGAGWTEGTWVTGAAQGGYDVAAVLLDGVTGNELGRYQNGTTDDDYLAFAGFDSAGGF 326
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A7C7JEC3_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JEC3_9FLAO) HSP 1 Score: 74.3 bits (181), Expect = 2.960e-11 Identity = 74/271 (27.31%), Postives = 124/271 (45.76%), Query Frame = 1
Query: 34 GGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVM--KLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSG 840
GGTS + G ++DS + I+ G ++ P + S+DF +K + + W W + S+ + + +G DS +DV + GY TG W + G D +VVKL G+DGS+IW + ++D ++ +D D+ + GG + I S V K+ +NG+L + Y +++ + + I+ G+TEG+ L +QG +D L+G L QNGT+ D + D +F G T G
Sbjct: 193 GGTS-LDYFRGLAVDSQDNIIIGGETLSNLFPDDEG------SSDFVVIKYSSSLDQM-WGWQNGSSTN-----DYTYGVAVDSQDDVYVSGYTTGVW--FGDIGNNDIIVVKLQGSDGSLIWGERFGTTSLDYSSSLSIDSNDDLMI-GGRTFSSWFSTIQGSFDVFAFKVDSSNGSLMFGYQDGSSNNERVNDLIPNSNNDVII-TGYTEGS-LYSTSQGMDDIFLAKLNGSDFSVLNSVQNGTNSVDQVNSVSVDLNDDIFITGLTYG 445
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A3M1KKL7_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KKL7_9DELT) HSP 1 Score: 58.2 bits (139), Expect = 5.340e-6 Identity = 72/256 (28.12%), Postives = 113/256 (44.14%), Query Frame = 1
Query: 13 NEEWRYE-GGTSEN-EAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETIS-ADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEY---SPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEW---MYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARY 753
+E WR+E GT+ + A+ ++D G + AG TF + + ADFA VKL+GA+G +W + ++ E+ ++ D++ DVV+ G ++ AT Q D VVKL GT G+ +W + D + V +D G+V+ G + D V+KL+G G W + A + VAVDP G ++ AG+ +D A + G G EL RY
Sbjct: 112 SELWRWERSGTAPGLDTAYSVAIDGSGDVLAAG------------TFENSATNADFAVVKLDGATGTELWRREIDGSANTDEEAAAVV---VDASGDVVVAGTLSS--PAT----QDDFAVVKLDGTTGAELWRVLLDGSAAAGNDAAYDVALDAGGNVFAVGRLKQSSSDADFA----VVKLAGETGAELWRREIDGLADSGSDGALRVAVDPA-GDVIAAGNLYSPSSL------DDLAVIKFAGATGGELWRY 335
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A661TDY8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661TDY8_9DELT) HSP 1 Score: 58.5 bits (140), Expect = 6.140e-6 Identity = 66/279 (23.66%), Postives = 122/279 (43.73%), Query Frame = 1
Query: 22 WRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWD--WTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGE----DAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSG 840
W G+S ++ +G S+D DG+ +AG G +++ +D + +SG W W GSS + ++ +G D++ +V + G G++D + NG+ D + K + DG+ W S+ D+ + V++D G++YVAG D ++ G+ + + + + GT +W +++ I SV+VD G + AG T G++ GG + G + G+ D D+ ++ G TSG
Sbjct: 156 WTRIWGSSNYDSGNGVSVDIDGNIYVAGHTGGSFDGQSNP------GSDSLCLTKYNSSGTKQWTRIW-----GSS--ENDNGYGISVDNSGNVYVAGCTAGSFDGQSNNGKCDLCLTKYND-DGTKQWTRIWGSYQADIGYGVNIDSNGNIYVAGKTYASFDGQSNPGNTS---LCLTKYNSGGTKQWTRIWGSSAADIGNSVSVD-NAGNVYVAGETGGSFDGQSYPGGQYSLCLTKYSSNGAKQWTRIWGSLSRDYGNGVSVDNFKHVYVAGSTSG 416 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19709.5499.1 >prot_H-elongata_contig19709.5499.1 ID=prot_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTback to top mRNA from alignment at H-elongata_contig19709:4215..5432- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19709.5499.1 ID=mRNA_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1218bp|location=Sequence derived from alignment at H-elongata_contig19709:4215..5432- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19709:4215..5432- >mRNA_H-elongata_contig19709.5499.1 ID=mRNA_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig19709:4215..5432- (Himanthalia elongata Himel1 dioecious)back to top |