mRNA_H-elongata_contig19709.5499.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19709.5499.1
Unique NamemRNA_H-elongata_contig19709.5499.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 8.230e-73
Identity = 154/399 (38.60%), Postives = 188/399 (47.12%), Query Frame = 1
Query:    4 PEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPR-TDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNEN------------------------------------------------------------------GQAD--------------------------------------------------------SLVVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
            PEF+E WR++G T+ +E    G++DSDG  +L G QG        DDTF +  S DFAAVKLEGASG V+W WT  S GS   + +    +DTDSNNDV++GG   G W ++N +                                                                  G+ D                                                        ++VVK SGTDG+V+WEYSP  SFT DV  +VDVD Q DVY+AGG DA N  G + E+PVV+KL GA G + W Y G  TS   F  +AVD TTGW+VGAG T GTWL G AQGG DFAAVVLDG  G+EL RYQ+GT   D + F GFDS G L  GG
Sbjct:    6 PEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVGTQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGS---EADVFLASDTDSNNDVIMGGTTEGYWSSSNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGDSDFFVIKLDGTDGSEMWTVQGGESTSFDAFHNVKVDSGGDLIAVGIGGDEDAVNVVVKFSGTDGAVLWEYSPVTSFTHDVPQSVDVDTQDDVYIAGGYDALNLHGILAETPVVLKLDGATGDVVWTYEGVNTSSAGFSRIAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDYLSFVGFDSVGGLIIGG 401          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI)

HSP 1 Score: 242 bits (617), Expect = 1.430e-71
Identity = 159/408 (38.97%), Postives = 192/408 (47.06%), Query Frame = 1
Query:    1 MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRT-DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATN-------------------------------------------------------------------------------------------------ENGQADSL--------------------------VVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSGLSE 849
             PEF+E WR++G T+ +E  + G++D DG+ +L G QG        DDTF +  S DFAAVKLEGASG V+W WT  S GS  +   ++   DTDSNND+V+GG   G W ++N                                                                                                 E+   DSL                          VVK SGTDG+V+WEYSP  S T DV  +VDVD Q DVY+AGG DA N  G + E+PVV+KL GA G + W Y G  TS   FRSVAVD TTGW+VGAG T GTWL G AQGG DFAAVVLDG  G+EL RYQ+GT   D +KF GFDS G L  GG  +   E
Sbjct:    5 FPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAV---DTDSNNDIVMGGRTEGYWSSSNPDSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIVVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIAGGYDALNLQGTLAETPVVLKLDGATGDVVWTYEGVATSSAGFRSVAVDLTTGWVVGAGWTTGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDDSLKFVGFDSVGGLILGGSWTDTGE 409          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI)

HSP 1 Score: 238 bits (608), Expect = 6.990e-71
Identity = 156/401 (38.90%), Postives = 190/401 (47.38%), Query Frame = 1
Query:    1 MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRT-DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATN-------------------------------------------------------------------------------------------------ENGQADSL--------------------------VVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
            +PEF+E WR++G T+ +E  + G++D DG+ +L G QG      T DDTF +  S DFAAVKLEGASG V+W WT  S GS   + ++    DTDSNND+V+GG   G W ++N                                                                                                 E+   DSL                          VVK SGTDG+V+WEYSP  S T DV  +VDVD Q DVY+AGG DA N  G + E+PVV+KL GA G + W Y G TTS      VAVD TTGW+VGAG TEGTWL G AQGG DFAAVVLDG  G+EL RYQ+GT   + + F GFDS G L  GG
Sbjct:    5 IPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGS---EADTFLAVDTDSNNDIVMGGRTEGYWSSSNPDTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIAVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIAGGYDALNLQGTLAETPVVLKLDGATGDVVWTYEGVTTSSAGLICVAVDLTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGVTGDELGRYQDGTTDDEYLSFVGFDSVGGLILGG 402          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 1.430e-63
Identity = 138/355 (38.87%), Postives = 165/355 (46.48%), Query Frame = 1
Query:  136 DDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNEN-----------------------------------------------------------------------GQADSLVVKLSGTDGS----------------------------------------------------VIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGG 828
            DDTF +  S DFAAVKL+GASG ++W WTD S GS+ +        DTDSN+DVV+GG   G W ++N +                                                                       G +D  V+KL GTDGS                                                    ++WEYSP  SFT DV  +VDVD Q DVY+AGG DA N  GD+ E+PVV+KL GA G + W Y G  TSR  F  VAVDPTTGW+VGAG TEGTWL G AQGG DFAAVVLDGD G+E+ RYQ+GT   D + F GFD+ G L  GG
Sbjct:   55 DDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLF---LAGDTDSNDDVVMGGRTEGYWSSSNPDSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGDSDFFVIKLDGTDGSEIWTVQGGESTSYDFFVDVKVDSAGDLVAIGIGGDEDAINVVVVKFSGIDGSILWEYSPVTSFTHDVPESVDVDTQDDVYLAGGYDALNLEGDLAETPVVLKLDGATGDVVWTYEGVATSRAGFFGVAVDPTTGWVVGAGWTEGTWLTGAAQGGYDFAAVVLDGDTGDEIGRYQDGTTDDDYLSFVGFDAVGGLILGG 406          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: D8LJD2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD2_ECTSI)

HSP 1 Score: 196 bits (498), Expect = 3.580e-55
Identity = 119/287 (41.46%), Postives = 163/287 (56.79%), Query Frame = 1
Query:   16 EEWRYEGGTSENEAAHGG-------SLDSDGSFILAG------VQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTS 837
            E WRY+   S + +   G       ++DS  + +L G      V GV V    D          F A+KL+G +G  +W    +  G      E + GA  DS+ D+V  GY   N DA+    + + LVVKLSG+DGSV+WEY+P + +  V H+VD+DD+  VYVAGGE A N  G +  + VV+KL G +G   W Y G      +  S+A DP TGW+VGAG  +G W+ G +QGG DFAAVVLDGD G EL R+Q+GT G DV++F  FD +G  F GG+++
Sbjct:   62 EVWRYQAAASTSSSGGYGVSYVLGVAVDSTNNPVLVGTTYNSLVDGVGVPGDWD----------FFAIKLDGVTGGELW----RVQGGVAFTREGLLGAKVDSSGDLVAAGYAA-NEDAS----ELNFLVVKLSGSDGSVLWEYAPSTASGGVFHSVDLDDRSHVYVAGGEGAPNFQGKVGTTAVVLKLDGESGVERWSYRGTGGDGIMLNSIAADPITGWVVGAGGAQGDWVEGASQGGFDFAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFST 329          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE)

HSP 1 Score: 192 bits (489), Expect = 1.690e-53
Identity = 104/224 (46.43%), Postives = 141/224 (62.95%), Query Frame = 1
Query:  166 DFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTS 837
            DF A+KL+G +G  +W    +  G      E + GA  DS+ D+V  GY   N DA+    + + LVVKLSG+DGSV+WEY+P + +  V H+VD+DD+  VYVAGGE A N  G +  + VV+KL G +G   W Y G      +  SVA DP TGW+VGAG  +G W+ G + GG D+AAVVLDGD G EL R+Q+GT G DV++F  FD +G  F GG+++
Sbjct:  187 DFFAIKLDGMTGGELW----RVQGGVAFTREGLLGAKVDSSGDLVAAGYAA-NEDAS----ELNFLVVKLSGSDGSVLWEYAPSAASGGVFHSVDLDDRNHVYVAGGEGAPNFQGKVGTTAVVLKLDGESGVERWSYRGTGGDGIMLNSVAADPITGWVVGAGGAQGNWVEGASVGGFDYAAVVLDGDSGAELTRWQDGTLGDDVLEFVEFDISGEFFLGGFST 401          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A6H5LD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD60_9PHAE)

HSP 1 Score: 182 bits (462), Expect = 2.520e-51
Identity = 109/218 (50.00%), Postives = 130/218 (59.63%), Query Frame = 1
Query:  166 DFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPF-SFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGAL 816
            DF A KL+G  G  +W     + G +    +S      +S  D+V  G ++G+  A +        VVKLSG DG V+WEYSP  S T DV H+VDVD Q DV V G  DA N  G   E+PVV+KL GA G + W Y G  TS   F  +AVD TTGW+VGAG TEGTW+ G AQGG D AAV+LDG  G EL RYQNGT   D + FAGFDSAG  
Sbjct:  120 DFFATKLDGTDGSEIWT----TQGGASTSFDSFREVVVESTGDLVAVG-ISGDVYAIS------IFVVKLSGIDGIVLWEYSPVTSLTHDVPHSVDVDAQDDVNVVGVYDALNLQGSTAETPVVLKLDGATGDVGWTYEGMATSGDGFYDLAVDLTTGWVVGAGWTEGTWVTGAAQGGYDVAAVLLDGVTGNELGRYQNGTTDDDYLAFAGFDSAGGF 326          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A7C7JEC3_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JEC3_9FLAO)

HSP 1 Score: 74.3 bits (181), Expect = 2.960e-11
Identity = 74/271 (27.31%), Postives = 124/271 (45.76%), Query Frame = 1
Query:   34 GGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVM--KLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSG 840
            GGTS  +   G ++DS  + I+ G    ++ P  +       S+DF  +K   +   + W W + S+ +     +  +G   DS +DV + GY TG W    + G  D +VVKL G+DGS+IW     + ++D   ++ +D   D+ + GG    +    I  S  V   K+  +NG+L + Y   +++      +  +     I+  G+TEG+ L   +QG +D     L+G     L   QNGT+  D +     D    +F  G T G
Sbjct:  193 GGTS-LDYFRGLAVDSQDNIIIGGETLSNLFPDDEG------SSDFVVIKYSSSLDQM-WGWQNGSSTN-----DYTYGVAVDSQDDVYVSGYTTGVW--FGDIGNNDIIVVKLQGSDGSLIWGERFGTTSLDYSSSLSIDSNDDLMI-GGRTFSSWFSTIQGSFDVFAFKVDSSNGSLMFGYQDGSSNNERVNDLIPNSNNDVII-TGYTEGS-LYSTSQGMDDIFLAKLNGSDFSVLNSVQNGTNSVDQVNSVSVDLNDDIFITGLTYG 445          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A3M1KKL7_9DELT (Uncharacterized protein (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1KKL7_9DELT)

HSP 1 Score: 58.2 bits (139), Expect = 5.340e-6
Identity = 72/256 (28.12%), Postives = 113/256 (44.14%), Query Frame = 1
Query:   13 NEEWRYE-GGTSEN-EAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETIS-ADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEY---SPFSFTIDVLHAVDVDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEW---MYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARY 753
            +E WR+E  GT+   + A+  ++D  G  + AG            TF  + + ADFA VKL+GA+G  +W      + ++ E+  ++     D++ DVV+ G ++    AT    Q D  VVKL GT G+ +W        +   D  + V +D  G+V+  G     +   D      V+KL+G  G   W   +   A +       VAVDP  G ++ AG+             +D A +   G  G EL RY
Sbjct:  112 SELWRWERSGTAPGLDTAYSVAIDGSGDVLAAG------------TFENSATNADFAVVKLDGATGTELWRREIDGSANTDEEAAAVV---VDASGDVVVAGTLSS--PAT----QDDFAVVKLDGTTGAELWRVLLDGSAAAGNDAAYDVALDAGGNVFAVGRLKQSSSDADFA----VVKLAGETGAELWRREIDGLADSGSDGALRVAVDPA-GDVIAAGNLYSPSSL------DDLAVIKFAGATGGELWRY 335          
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Match: A0A661TDY8_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A661TDY8_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 6.140e-6
Identity = 66/279 (23.66%), Postives = 122/279 (43.73%), Query Frame = 1
Query:   22 WRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFTETISADFAAVKLEGASGVVVWD--WTDQSTGSSGEQLESIFGADTDSNNDVVLGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVDVDDQGDVYVAGGE----DAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRTIFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELARYQNGTDGSDVIKFAGFDSAGALFFGGYTSG 840
            W    G+S  ++ +G S+D DG+  +AG  G     +++        +D   +    +SG   W   W     GSS  + ++ +G   D++ +V + G   G++D  + NG+ D  + K +  DG+  W     S+  D+ + V++D  G++YVAG      D ++  G+ +   + +    + GT +W     +++  I  SV+VD   G +  AG T G++      GG     +      G +      G+   D       D+   ++  G TSG
Sbjct:  156 WTRIWGSSNYDSGNGVSVDIDGNIYVAGHTGGSFDGQSNP------GSDSLCLTKYNSSGTKQWTRIW-----GSS--ENDNGYGISVDNSGNVYVAGCTAGSFDGQSNNGKCDLCLTKYND-DGTKQWTRIWGSYQADIGYGVNIDSNGNIYVAGKTYASFDGQSNPGNTS---LCLTKYNSGGTKQWTRIWGSSAADIGNSVSVD-NAGNVYVAGETGGSFDGQSYPGGQYSLCLTKYSSNGAKQWTRIWGSLSRDYGNGVSVDNFKHVYVAGSTSG 416          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19709.5499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A6H5KD80_9PHAE8.230e-7338.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKX8_ECTSI1.430e-7138.97Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LJC9_ECTSI6.990e-7138.90Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
D8LJD0_ECTSI1.430e-6338.87Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
D8LJD2_ECTSI3.580e-5541.46Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLD3_9PHAE1.690e-5346.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD60_9PHAE2.520e-5150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7C7JEC3_9FLAO2.960e-1127.31Uncharacterized protein (Fragment) n=1 Tax=Flavoba... [more]
A0A3M1KKL7_9DELT5.340e-628.13Uncharacterized protein (Fragment) n=1 Tax=Deltapr... [more]
A0A661TDY8_9DELT6.140e-623.66Uncharacterized protein n=1 Tax=Deltaproteobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19709contigH-elongata_contig19709:4215..5432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score60.1
Seed ortholog evalue2e-06
Seed eggNOG ortholog1123368.AUIS01000024_gene971
KEGG koko:K20276
KEGG Pathwayko02024,map02024
EggNOG free text desc.guanyl-nucleotide exchange factor activity
EggNOG OGsCOG1520@1,COG1520@2,COG5184@1,COG5184@2
COG Functional cat.DZ
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Hectar predicted targeting categoryother localisation
Exons2
Model size849
Cds size849
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930115.5967164-CDS-H-elongata_contig19709:4214..47151622930115.5967164-CDS-H-elongata_contig19709:4214..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19709 4215..4715 -
1691679286.50637-CDS-H-elongata_contig19709:4214..47151691679286.50637-CDS-H-elongata_contig19709:4214..4715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19709 4215..4715 -
1622930115.6246753-CDS-H-elongata_contig19709:5084..54321622930115.6246753-CDS-H-elongata_contig19709:5084..5432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19709 5085..5432 -
1691679286.5174177-CDS-H-elongata_contig19709:5084..54321691679286.5174177-CDS-H-elongata_contig19709:5084..5432Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19709 5085..5432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19709.5499.1prot_H-elongata_contig19709.5499.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19709 4215..5432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19709.5499.1

>prot_H-elongata_contig19709.5499.1 ID=prot_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=283bp
MPEFNEEWRYEGGTSENEAAHGGSLDSDGSFILAGVQGVDVTPRTDDTFT
ETISADFAAVKLEGASGVVVWDWTDQSTGSSGEQLESIFGADTDSNNDVV
LGGYVTGNWDATNENGQADSLVVKLSGTDGSVIWEYSPFSFTIDVLHAVD
VDDQGDVYVAGGEDAENKMGDITESPVVMKLSGANGTLEWMYSGATTSRT
IFRSVAVDPTTGWIVGAGHTEGTWLAGEAQGGNDFAAVVLDGDRGEELAR
YQNGTDGSDVIKFAGFDSAGALFFGGYTSGLSE
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mRNA from alignment at H-elongata_contig19709:4215..5432-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19709.5499.1 ID=mRNA_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1218bp|location=Sequence derived from alignment at H-elongata_contig19709:4215..5432- (Himanthalia elongata Himel1 dioecious)
ATGCCCGAATTCAACGAGGAATGGCGCTACGAGGGAGGGACAAGTGAAAA CGAAGCCGCCCATGGAGGGTCGCTCGACTCAGACGGCAGTTTCATCCTCG CCGGAGTGCAAGGGGTTGATGTAACGCCAAGAACGGATGACACCTTTACA GAAACGATATCTGCCGACTTTGCGGCGGTAAAACTGGAAGGGGCATCGGG AGTTGTAGTGTGGGATTGGACCGATCAGTCCACCGGATCATCTGGGGAAC AGCTTGAATCCATTTTTGGCGCAGATACAGATAGTAACAACGATGTGGTC TTAGGAGGTTATGTCACGGGAAACTGGGATGCCACCAATGAAAACGGCGT GAGACACTTGGCGGCGGTGAAACTCGAGGGCAGCACGGGAGACGAAGTAT GGCGCTTCCAGGACGTTGCCCAAGATTCGATGTCGACAATTTTTTACACA ACATACTATGGGTCGGGCACCATAATAGGCGTAGCTGTTGATGACGACGA CAACGTATTCCTGGTTGGAGGCACCTACAACAGCTTGGTCGATGGTGAGG GGTACCCTGGTGACTTCGATTACTTTATTATAAAGATTGCCGGGGAAACT GGAACCAAGATCTTCACTGTTCAGGGAGGACTCTCATTCCACTGGGATGT CTTATATGATGCGAAGGTAGACTTTGCCGGGAATGTTGTTGTGGCGGGTA TGTCGGGCTCCGAAGAGCAAGCCGACTCTCTTGTGGTTAAACTGAGTGGC ACCGACGGCAGCGTTATCTGGGAGTACTCACCATTTTCTTTCACCATCGA CGTGCTCCATGCAGTCGACGTCGATGACCAGGGCGATGTGTACGTAGCCG GTGGAGAAGACGCTGAGAACAAAATGGGCGACATTACTGAATCCCCTGTC GTGATGAAGCTGTCCGGCGCCAACGGCACTCTGGAGTGGATGTACTCGGG GGCGACCACATCGAGAACCATTTTCCGGAGCGTTGCTGTCGATCCGACAA CGGGCTGGATTGTGGGCGCTGGGCACACGGAAGGTACTTGGTTGGCGGGA GAAGCTCAAGGTGGAAATGATTTCGCGGCTGTCGTACTTGACGGCGATAG AGGAGAAGAACTCGCCCGCTATCAAAATGGAACGGACGGTAGCGACGTCA TAAAATTTGCGGGATTCGACTCTGCGGGGGCACTGTTCTTTGGGGGATAC ACATCCGGACTTTCCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig19709:4215..5432-

>mRNA_H-elongata_contig19709.5499.1 ID=mRNA_H-elongata_contig19709.5499.1|Name=mRNA_H-elongata_contig19709.5499.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1698bp|location=Sequence derived from alignment at H-elongata_contig19709:4215..5432- (Himanthalia elongata Himel1 dioecious)
ATGCCCGAATTCAACGAGGAATGGCGCTACGAGGGAGGGACAAGTGAAAA
CGAAGCCGCCCATGGAGGGTCGCTCGACTCAGACGGCAGTTTCATCCTCG
CCGGAGTGCAAGGGGTTGATGTAACGCCAAGAACGGATGACACCTTTACA
GAAACGATATCTGCCGACTTTGCGGCGGTAAAACTGGAAGGGGCATCGGG
AGTTGTAGTGTGGGATTGGACCGATCAGTCCACCGGATCATCTGGGGAAC
AGCTTGAATCCATTTTTGGCGCAGATACAGATAGTAACAACGATGTGGTC
TTAGGAGGTTATGTCACGGGAAACTGGGATGCCACCAATGAAAACGGCAT
GCCCGAATTCAACGAGGAATGGCGCTACGAGGGAGGGACAAGTGAAAACG
AAGCCGCCCATGGAGGGTCGCTCGACTCAGACGGCAGTTTCATCCTCGCC
GGAGTGCAAGGGGTTGATGTAACGCCAAGAACGGATGACACCTTTACAGA
AACGATATCTGCCGACTTTGCGGCGGTAAAACTGGAAGGGGCATCGGGAG
TTGTAGTGTGGGATTGGACCGATCAGTCCACCGGATCATCTGGGGAACAG
CTTGAATCCATTTTTGGCGCAGATACAGATAGTAACAACGATGTGGTCTT
AGGAGGTTATGTCACGGGAAACTGGGATGCCACCAATGAAAACGGCCAAG
CCGACTCTCTTGTGGTTAAACTGAGTGGCACCGACGGCAGCGTTATCTGG
GAGTACTCACCATTTTCTTTCACCATCGACGTGCTCCATGCAGTCGACGT
CGATGACCAGGGCGATGTGTACGTAGCCGGTGGAGAAGACGCTGAGAACA
AAATGGGCGACATTACTGAATCCCCTGTCGTGATGAAGCTGTCCGGCGCC
AACGGCACTCTGGAGTGGATGTACTCGGGGGCGACCACATCGAGAACCAT
TTTCCGGAGCGTTGCTGTCGATCCGACAACGGGCTGGATTGTGGGCGCTG
GGCACACGGAAGGTACTTGGTTGGCGGGAGAAGCTCAAGGTGGAAATGAT
TTCGCGGCTGTCGTACTTGACGGCGATAGAGGAGAAGAACTCGCCCGCTA
TCAAAATGGAACGGACGGTAGCGACGTCATAAAATTTGCGGGATTCGACT
CTGCGGGGGCACTGTTCTTTGGGGGATACACATCCGGACTTTCCGAGCAA
GCCGACTCTCTTGTGGTTAAACTGAGTGGCACCGACGGCAGCGTTATCTG
GGAGTACTCACCATTTTCTTTCACCATCGACGTGCTCCATGCAGTCGACG
TCGATGACCAGGGCGATGTGTACGTAGCCGGTGGAGAAGACGCTGAGAAC
AAAATGGGCGACATTACTGAATCCCCTGTCGTGATGAAGCTGTCCGGCGC
CAACGGCACTCTGGAGTGGATGTACTCGGGGGCGACCACATCGAGAACCA
TTTTCCGGAGCGTTGCTGTCGATCCGACAACGGGCTGGATTGTGGGCGCT
GGGCACACGGAAGGTACTTGGTTGGCGGGAGAAGCTCAAGGTGGAAATGA
TTTCGCGGCTGTCGTACTTGACGGCGATAGAGGAGAAGAACTCGCCCGCT
ATCAAAATGGAACGGACGGTAGCGACGTCATAAAATTTGCGGGATTCGAC
TCTGCGGGGGCACTGTTCTTTGGGGGATACACATCCGGACTTTCCGAG
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