mRNA_H-elongata_contig197.5492.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig197.5492.1
Unique NamemRNA_H-elongata_contig197.5492.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A7S1U7W8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U7W8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 4.510e-18
Identity = 46/114 (40.35%), Postives = 64/114 (56.14%), Query Frame = 1
Query:   49 ETHPNRGEQCLFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVRSRVLE 390
            E   +  +  +F  C  A   VI  V S+YVRR RLPEP E++FCT  TT+EELEL +RRF   R+                  + IF IAD+H+L Y+ Q +L++ +RSR+ E
Sbjct:   92 EDESSNNQLPVFVACCDAPAAVIPTVFSVYVRRRRLPEPSEILFCTSATTAEELELLLRRFLGARRHRRA--------------DHIFCIADLHKLSYTQQCLLVDMLRSRLHE 191          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A7S3YB00_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YB00_9EUKA)

HSP 1 Score: 82.0 bits (201), Expect = 5.970e-17
Identity = 38/99 (38.38%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   79 LFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVR 375
            ++  CA +   VI VVLS++VRR RLPEPGE++FC   T+ E+++L   RF + +K N G+               +F +ADVH L Y+ Q  +L+ +R
Sbjct:    9 IYVACAKSPQHVIEVVLSVFVRRSRLPEPGEILFCNERTSVEDIDLLFYRFLNAKKHNRGHF--------------VFTVADVHALTYTQQVAVLDRLR 93          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A7S0H307_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H307_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.570e-16
Identity = 41/102 (40.20%), Postives = 59/102 (57.84%), Query Frame = 1
Query:   79 LFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVRSRV 384
            ++ TCA +   V  VVLS+YVRRGRLPEPGE++FC+ +TT E++EL   RF   RK              S   + +F +AD+H LDY  Q  ++  +R  +
Sbjct:  763 IWVTCADSPGAVFEVVLSVYVRRGRLPEPGEILFCSQSTTIEDIELLFYRFLSARK--------------SGFQDSVFCVADLHNLDYGMQVGVVARMREMI 850          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A7S0DLQ4_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DLQ4_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 7.370e-16
Identity = 45/112 (40.18%), Postives = 63/112 (56.25%), Query Frame = 1
Query:   46 DETHPNRGEQCL--FATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVR 375
            +E     GE+ L  +  CA +   VI VVLS+YVRR RLPEPGE++FCT +TT EE+EL   RF   +    G+               +F +ADVH L+Y+ Q  +L+ +R
Sbjct:  347 EEEEKATGEKRLPVYVACAKSPQHVIEVVLSVYVRRCRLPEPGEILFCTSDTTLEEIELLFYRFLAAKLHGRGHF--------------VFCVADVHALNYTKQVAVLDKLR 444          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A7S0DVA6_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DVA6_9EUKA)

HSP 1 Score: 82.8 bits (203), Expect = 7.650e-16
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:   79 LFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVRSRVLE 390
            +F TCA + + VI VVLS+Y RRGR+PEP E++FC+  TT EE+EL   RF   ++   G+               +F +AD+H L Y+ Q  +L  +R  + +
Sbjct: 1828 VFVTCAESAEAVIEVVLSVYARRGRIPEPSEILFCSSQTTLEEIELIFYRFISAKRHARGHY--------------VFTVADIHALPYTYQVSVLEKLREMLAD 1917          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A0L0DUC3_THETB (Uncharacterized protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DUC3_THETB)

HSP 1 Score: 70.9 bits (172), Expect = 1.140e-11
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 1
Query:   37 PYPDETHPNRGEQCLFAT--------CATAED--EVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVRSRVLE 390
            P PD T  +R +  + A          ATA+    VI VVLS+Y RRGRLPEP E+IFCT  T  E++ L +RRF                 A       ++ +AD+H L Y+ Q  +++ + S + E
Sbjct: 1483 PPPDATVEHRADMLVKAAESRTLPVWVATADSPSRVIDVVLSVYARRGRLPEPDEIIFCTSTTRLEDVTLLLRRFV--------------AAAAHGRASALYTLADIHALSYTLQCAIVDALHSLLAE 1596          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A8J2AKF1_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2AKF1_9DINO)

HSP 1 Score: 61.2 bits (147), Expect = 2.660e-8
Identity = 27/55 (49.09%), Postives = 37/55 (67.27%), Query Frame = 1
Query:   79 LFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRR 243
            +FA     E++V+ +VLS+Y RR RLPEP EV+ CT  T  EE+E+ +RRF   R
Sbjct: 2764 IFACTTPKEEDVVGLVLSLYFRRERLPEPQEVLLCTETTQVEEIEILIRRFIQAR 2818          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A433PRH5_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PRH5_9FUNG)

HSP 1 Score: 55.5 bits (132), Expect = 2.500e-6
Identity = 31/90 (34.44%), Postives = 46/90 (51.11%), Query Frame = 1
Query:  112 VIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRR--FADRRKRNEGYNPTSTTTAPSSCDEGIFVIADVHRLDYSSQAMLLNHVR 375
            V  V+LS+Y   G +PEP +++ C+P TT+EEL+L +RR  FA  +K     N              +F I +V  L Y  Q  L+  +R
Sbjct:  242 VPNVLLSLYANHGTVPEPSQILLCSPTTTTEELDLLLRRCFFASSQKFGGHANQ-------------LFCIGNVQNLSYERQLTLVRSIR 318          
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Match: A0A433DMA4_9FUNG (HTH araC/xylS-type domain-containing protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433DMA4_9FUNG)

HSP 1 Score: 54.7 bits (130), Expect = 5.100e-6
Identity = 30/100 (30.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:   79 LFATCATAEDEVIRVVLSIYVRRGRLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCDEG-IFVIADVHRLDYSSQAMLLNHVR 375
            LF         V  V++S+YV  G +PEP +++ CTP+TT EEL+L ++R              ++        +G +F IA V  L + +Q++L+  +R
Sbjct: 1531 LFVAVCNDRGLVPNVIISLYVNNGHVPEPSQLLLCTPSTTEEELDLLLKRCT-----------WASCQKNQLAGKGQLFCIAGVQYLPFETQSILVRKIR 1619          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig197.5492.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A7S1U7W8_9STRA4.510e-1840.35Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3YB00_9EUKA5.970e-1738.38Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S0H307_9EUKA1.570e-1640.20Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0DLQ4_9EUKA7.370e-1640.18Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A7S0DVA6_9EUKA7.650e-1637.50Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A0L0DUC3_THETB1.140e-1134.38Uncharacterized protein n=1 Tax=Thecamonas trahens... [more]
A0A8J2AKF1_9DINO2.660e-849.09Hypothetical protein n=1 Tax=Amoebophrya sp. A120 ... [more]
A0A433PRH5_9FUNG2.500e-634.44Uncharacterized protein (Fragment) n=1 Tax=Endogon... [more]
A0A433DMA4_9FUNG5.100e-630.00HTH araC/xylS-type domain-containing protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig197contigH-elongata_contig197:24319..24708 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog227086.JGI_V11_142949
EggNOG free text desc.cornified envelope assembly
EggNOG OGs2CMEW@1,2QQ65@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size390
Cds size390
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930114.9586637-CDS-H-elongata_contig197:24318..247081622930114.9586637-CDS-H-elongata_contig197:24318..24708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197 24319..24708 -
1691679286.2389586-CDS-H-elongata_contig197:24318..247081691679286.2389586-CDS-H-elongata_contig197:24318..24708Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig197 24319..24708 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig197.5492.1prot_H-elongata_contig197.5492.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig197 24319..24708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig197.5492.1

>prot_H-elongata_contig197.5492.1 ID=prot_H-elongata_contig197.5492.1|Name=mRNA_H-elongata_contig197.5492.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=130bp
LVASQKRIKTLRPYPDETHPNRGEQCLFATCATAEDEVIRVVLSIYVRRG
RLPEPGEVIFCTPNTTSEELELTVRRFADRRKRNEGYNPTSTTTAPSSCD
EGIFVIADVHRLDYSSQAMLLNHVRSRVLE
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mRNA from alignment at H-elongata_contig197:24319..24708-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig197.5492.1 ID=mRNA_H-elongata_contig197.5492.1|Name=mRNA_H-elongata_contig197.5492.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=390bp|location=Sequence derived from alignment at H-elongata_contig197:24319..24708- (Himanthalia elongata Himel1 dioecious)
CTGGTAGCCTCGCAGAAACGTATCAAAACGTTAAGACCTTATCCCGATGA GACTCACCCCAATAGAGGCGAACAGTGCCTCTTCGCAACATGCGCGACCG CTGAAGACGAAGTGATTCGCGTGGTGCTCTCGATCTACGTACGGAGAGGC CGGTTGCCGGAGCCCGGAGAAGTGATCTTTTGTACCCCAAATACCACCAG TGAGGAGCTCGAGCTCACAGTTCGGCGGTTCGCCGATCGGAGGAAGCGCA ACGAAGGGTATAATCCAACTAGTACCACCACGGCGCCGTCTAGCTGTGAC GAAGGAATCTTCGTGATTGCCGACGTGCATCGGCTAGACTATAGCAGCCA GGCGATGTTACTCAATCATGTTCGGTCCAGGGTTTTGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig197:24319..24708-

>mRNA_H-elongata_contig197.5492.1 ID=mRNA_H-elongata_contig197.5492.1|Name=mRNA_H-elongata_contig197.5492.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=780bp|location=Sequence derived from alignment at H-elongata_contig197:24319..24708- (Himanthalia elongata Himel1 dioecious)
CTGGTAGCCTCGCAGAAACGTATCAAAACGTTAAGACCTTATCCCGATGA
GACTCACCCCAATAGAGGCGAACAGTGCCTCTTCGCAACATGCGCGACCG
CTGAAGACGAAGTGATTCGCGTGGTGCTCTCGATCTACGTACGGAGAGGC
CGGTTGCCGGAGCCCGGAGAAGTGATCTTTTGTACCCCAAATACCACCAG
TGAGGAGCTCGAGCTCACAGTTCGGCGGTTCGCCGATCGGAGGAAGCGCA
ACGAAGGGTATAATCCAACTAGTACCACCACGGCGCCGTCTAGCTGTGAC
GAAGGAATCTTCGTGATTGCCGACGTGCATCGGCTAGACTATAGCAGCCA
GGCGATGTTACTCAATCATGTTCGGTCCAGGGTTTTGGAGCTGGTAGCCT
CGCAGAAACGTATCAAAACGTTAAGACCTTATCCCGATGAGACTCACCCC
AATAGAGGCGAACAGTGCCTCTTCGCAACATGCGCGACCGCTGAAGACGA
AGTGATTCGCGTGGTGCTCTCGATCTACGTACGGAGAGGCCGGTTGCCGG
AGCCCGGAGAAGTGATCTTTTGTACCCCAAATACCACCAGTGAGGAGCTC
GAGCTCACAGTTCGGCGGTTCGCCGATCGGAGGAAGCGCAACGAAGGGTA
TAATCCAACTAGTACCACCACGGCGCCGTCTAGCTGTGACGAAGGAATCT
TCGTGATTGCCGACGTGCATCGGCTAGACTATAGCAGCCAGGCGATGTTA
CTCAATCATGTTCGGTCCAGGGTTTTGGAG
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