mRNA_H-elongata_contig19693.5491.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig19693.5491.1
Unique Name	mRNA_H-elongata_contig19693.5491.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

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BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.640e-20
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLKDV 423
            R     RE   Y+   P ++   F+VL YW     + V A T +V +PA  P+L  + +L+LGI+ATSCQ ERNFSA + L+   R ++ P KVE MM ++LNRHL+  ++++
Sbjct:  505 RRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 617

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 1.710e-20
Identity = 46/113 (40.71%), Postives = 69/113 (61.06%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLKDV 423
            R     RE   Y+   P ++   F+VL YW     + V A T +V +PA  P+L  + +L+LGI+ATSCQ ERNFSA + L+   R ++ P KVE MM ++LNRHL+  ++++
Sbjct:  700 RRVLIEREVLVYLAENPQLDVDGFNVLGYWNRRGTDSVSATTGKVTSPAEMPYLAFIARLYLGIEATSCQAERNFSALAHLIGQLRCNMLPSKVERMMFIRLNRHLVAEVREL 812

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5KJT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJT6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 8.120e-19
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLKDV 423
            R     RE   Y+  T  +   DF+VL +W     + V + T  V +PA  P+L  + +L LGI+A+SCQ ERNFSA S L+   R ++   KVE MM ++LNRHL+  ++++
Sbjct:  123 RRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 235

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.260e-18
Identity = 43/111 (38.74%), Postives = 67/111 (60.36%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLK 417
            R     RE   Y+   P ++  DF++L +W     + V A T +V +PA  P+L  + +LHLGI+ATSCQ ERNFSA + L+ D   ++   +VE MM ++LN+HL+  ++
Sbjct:  501 RRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDLCCNMLSHRVERMMLVRLNKHLLAEVR 611

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5L7P7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P7_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 1.820e-18
Identity = 42/103 (40.78%), Postives = 62/103 (60.19%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLN 393
            R     RE   Y+   P ++  DF++L +W     + V A T +V +PA  P+L  + +LHLGI+ATSCQ ERNFSA + L+ D R ++   +VE MM ++LN
Sbjct:  118 RRVLIEREMLVYLAEQPQVDVDDFNLLGFWNRRGTDSVSAATGKVTSPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGDFRCNMLSHRVERMMLVRLN 220

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 6.130e-18
Identity = 44/113 (38.94%), Postives = 66/113 (58.41%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLKDV 423
            R     RE   Y+  T  +   DF+VL +W     + V + T  V +PA  P+L  + +L LGI+A+SCQ ERNFSA S L+   R ++   KVE MM ++LNRHL+  ++++
Sbjct:  688 RRVLIEREVLVYLAETEQVEVDDFNVLGFWNRRGTDSVCSTTGNVTSPAEMPYLAFIARLFLGIEASSCQAERNFSALSHLIGHLRCNMLSRKVERMMLIRLNRHLVDEVREL 800

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.420e-17
Identity = 41/111 (36.94%), Postives = 67/111 (60.36%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLK 417
            R     RE   Y+   P ++   F+++ +W     + V A T +V +PA  P+L  + +LHLGI+ATSCQ ERNFSA + L+ + R ++ P +VE MM ++LNR ++  ++
Sbjct:  397 RRVLIEREMLVYLAEQPQLDVDGFNLIGFWNRRGTDSVRAATGQVTSPADMPYLAFIARLHLGIEATSCQAERNFSALAHLIGNLRCNMLPHRVERMMLIRLNRRMLDEVR 507

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 9.070e-17
Identity = 42/111 (37.84%), Postives = 63/111 (56.76%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLK 417
            R     RE   Y+   P ++   F+++ +W       V   T +V  PA  P+L  + +LHLGI+ATSCQ ERNFSA + L+   R ++   KVE MM ++LNRHL+  ++
Sbjct:  383 RHVLIEREVLVYLAEQPQVDVDGFNLVGFWNRRGTNSVCPTTGKVTAPAEMPYLAFIARLHLGIEATSCQAERNFSALAHLIGTLRCNMLARKVERMMLIRLNRHLLAEVR 493

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 7.820e-16
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLK 417
            R     RE   Y+   PA   +DF +L++W+        A+T EV      PHL L+ +L  GI++TSCQ ERNFSA + L+   RS + P KVE +M L+LNR  IP +K
Sbjct:  363 RGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVK 471

[Close]

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 83.2 bits (204), Expect = 8.690e-16
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 1

Query:   85 RSTAAAREFEEYMQATPAINSHDFDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPERNFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLK 417
            R     RE   Y+   PA   +DF +L++W+        A+T EV      PHL L+ +L  GI++TSCQ ERNFSA + L+   RS + P KVE +M L+LNR  IP +K
Sbjct:  691 RGAIVERELRMYLAEDPAEEEYDFSLLEFWQRRSKPRTCAETGEV--EPGLPHLALIARLFHGIESTSCQAERNFSALAFLIGSLRSSMLPGKVERLMFLRLNRLYIPEVK 799

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot

BLAST of mRNA_H-elongata_contig19693.5491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16


Match Name	E-value	Identity	Description
A0A6H5JTB8_9PHAE	1.640e-20	40.71	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JGG8_9PHAE	1.710e-20	40.71	Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec...	[more]
A0A6H5KJT6_9PHAE	8.120e-19	38.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JQI6_9PHAE	1.260e-18	38.74	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7P7_9PHAE	1.820e-18	40.78	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5JRT6_9PHAE	6.130e-18	38.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JXV5_9PHAE	1.420e-17	36.94	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KDJ6_9PHAE	9.070e-17	37.84	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KAN7_9PHAE	7.820e-16	41.44	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]
A0A6H5KJ52_9PHAE	8.690e-16	41.44	Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig19693	contig	H-elongata_contig19693:259..693 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	435
Cds size	432
Stop	1
Start	1

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930114.5836964-CDS-H-elongata_contig19693:258..690	1622930114.5836964-CDS-H-elongata_contig19693:258..690	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig19693 259..690 -
1691679286.2225876-CDS-H-elongata_contig19693:258..690	1691679286.2225876-CDS-H-elongata_contig19693:258..690	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig19693 259..690 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930114.5942795-UTR-H-elongata_contig19693:690..693	1622930114.5942795-UTR-H-elongata_contig19693:690..693	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig19693 691..693 -
1691679286.2305396-UTR-H-elongata_contig19693:690..693	1691679286.2305396-UTR-H-elongata_contig19693:690..693	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig19693 691..693 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig19693.5491.1	prot_H-elongata_contig19693.5491.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig19693 259..690 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig19693:259..693-
coding sequence from alignment at H-elongata_contig19693:259..693-

protein sequence of mRNA_H-elongata_contig19693.5491.1

>prot_H-elongata_contig19693.5491.1 ID=prot_H-elongata_contig19693.5491.1|Name=mRNA_H-elongata_contig19693.5491.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=144bp
MERIPRERSLLVSPPDNTEDDAREDYLRSTAAAREFEEYMQATPAINSHD
FDVLKYWKNHVIEGVDAKTAEVITPARRPHLGLLVKLHLGIDATSCQPER
NFSAFSALLSDRRSHLSPEKVETMMPLKLNRHLIPGLKDVLAM*

mRNA from alignment at H-elongata_contig19693:259..693-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig19693.5491.1 ID=mRNA_H-elongata_contig19693.5491.1|Name=mRNA_H-elongata_contig19693.5491.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=435bp|location=Sequence derived from alignment at H-elongata_contig19693:259..693- (Himanthalia elongata Himel1 dioecious)
AGGATGGAGAGAATCCCACGCGAGCGCAGCCTGCTGGTTTCGCCGCCTGA
TAATACGGAAGATGACGCCAGGGAAGACTATTTGCGGAGTACGGCGGCAG
CACGTGAATTCGAAGAGTACATGCAAGCGACTCCCGCCATCAACTCGCAC
GACTTCGACGTACTAAAGTATTGGAAGAACCATGTGATTGAAGGCGTTGA
TGCCAAGACAGCAGAGGTCATCACTCCTGCTCGCCGGCCGCACCTTGGCC
TGTTGGTCAAACTGCACCTGGGCATCGATGCTACCAGCTGCCAACCTGAA
AGGAACTTCTCCGCTTTTTCTGCTCTCCTTAGCGACCGACGCAGTCACCT
TTCACCCGAAAAGGTCGAAACGATGATGCCGCTCAAGCTCAACCGGCACC
TGATCCCGGGGTTAAAAGATGTTCTCGCGATGTAG

Coding sequence (CDS) from alignment at H-elongata_contig19693:259..693-

>mRNA_H-elongata_contig19693.5491.1 ID=mRNA_H-elongata_contig19693.5491.1|Name=mRNA_H-elongata_contig19693.5491.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=864bp|location=Sequence derived from alignment at H-elongata_contig19693:259..693- (Himanthalia elongata Himel1 dioecious)
ATGGAGAGAATCCCACGCGAGCGCAGCCTGCTGGTTTCGCCGCCTGATAA
TACGGAAGATGACGCCAGGGAAGACTATTTGCGGAGTACGGCGGCAGCAC
GTGAATTCGAAGAGTACATGCAAGCGACTCCCGCCATCAACTCGCACGAC
TTCGACGTACTAAAGTATTGGAAGAACCATGTGATTGAAGGCGTTGATGC
CAAGACAGCAGAGGTCATCACTCCTGCTCGCCGGCCGCACCTTGGCCTGT
TGGTCAAACTGCACCTGGGCATCGATGCTACCAGCTGCCAACCTGAAAGG
AACTTCTCCGCTTTTTCTGCTCTCCTTAGCGACCGACGCAGTCACCTTTC
ACCCGAAAAGGTCGAAACGATGATGCCGCTCAAGCTCAACCGGCACCTGA
TCCCGGGGTTAAAAGATGTTCTCGCGATGTAGATGGAGAGAATCCCACGC
GAGCGCAGCCTGCTGGTTTCGCCGCCTGATAATACGGAAGATGACGCCAG
GGAAGACTATTTGCGGAGTACGGCGGCAGCACGTGAATTCGAAGAGTACA
TGCAAGCGACTCCCGCCATCAACTCGCACGACTTCGACGTACTAAAGTAT
TGGAAGAACCATGTGATTGAAGGCGTTGATGCCAAGACAGCAGAGGTCAT
CACTCCTGCTCGCCGGCCGCACCTTGGCCTGTTGGTCAAACTGCACCTGG
GCATCGATGCTACCAGCTGCCAACCTGAAAGGAACTTCTCCGCTTTTTCT
GCTCTCCTTAGCGACCGACGCAGTCACCTTTCACCCGAAAAGGTCGAAAC
GATGATGCCGCTCAAGCTCAACCGGCACCTGATCCCGGGGTTAAAAGATG
TTCTCGCGATGTAG