mRNA_H-elongata_contig196503.5482.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196503.5482.1
Unique NamemRNA_H-elongata_contig196503.5482.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D8LM92_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM92_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 2.330e-21
Identity = 43/63 (68.25%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDGTSSDPAPAPT 192
            H GY +FNP SWPS CAP+K DWI   +  CGDGD+YPEE+WNCADI ITSDG   DPAP+PT
Sbjct:  252 HQGYAEFNPESWPSSCAPTKADWINEVVGHCGDGDAYPEEFWNCADISITSDG---DPAPSPT 311
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BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D8LM93_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM93_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 3.020e-20
Identity = 49/97 (50.52%), Postives = 56/97 (57.73%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDGTSSDPAPAP----------TPESSTLAPIADEDPTPETFAPFAE 264
            H GY +FNP SWPS CAPSK DWI   +  CGDGD+YPEE+WNCADI ITSDG      PAP          T    T  P+AD      T+AP  +
Sbjct:  253 HQGYAEFNPPSWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG-----GPAPXXXXXXXXXXTAPEETEPPVADVPTAAPTYAPIPD 344
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BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D8LD67_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD67_ECTSI)

HSP 1 Score: 94.0 bits (232), Expect = 8.200e-20
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDG 162
            H GY +FNP SWPS CAPSK DWI   +  CGDGD+YPEE+WNCAD+ ITSDG
Sbjct:  250 HQGYAEFNPPSWPSSCAPSKADWINEAVGQCGDGDAYPEEFWNCADVSITSDG 302
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: A0A6H5JI36_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JI36_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 8.460e-20
Identity = 47/90 (52.22%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDGTSSDPAPAPTPESSTLAPIADED--PTPETFAPFAEM 267
            HPGYD+F+P S P  CAP+KEDW+ T L  CG+   YPEE+WNCADIEITSD     PAP       T +P  +E+  PTPE   P  E+
Sbjct:  317 HPGYDEFDPVSVPDGCAPTKEDWVQTQLGMCGEDGRYPEEFWNCADIEITSDEDGGGPAPT------TPSPTDEEELSPTPEPSVPTVEL 400
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D8LMF4_ECTSI (EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMF4_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.630e-19
Identity = 38/53 (71.70%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDG 162
            H GY +FNP SWPS CAPSK DWI   +  CGDGD+YPEE+WNCADI ITSDG
Sbjct:  257 HEGYAEFNPESWPSSCAPSKADWINEVVGQCGDGDAYPEEFWNCADISITSDG 309
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: A0A6H5KD35_9PHAE (CBM1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD35_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 1.940e-19
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDG 162
            H GY +FNP SWP  CAPSK DWI   +  CGDGD+YPEE+WNCAD+ ITSDG
Sbjct:  219 HQGYAEFNPPSWPGSCAPSKADWIKEAVGQCGDGDAYPEEFWNCADVSITSDG 271
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: A0A6H5KTY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTY6_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 8.650e-19
Identity = 37/53 (69.81%), Postives = 42/53 (79.25%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDG 162
            H GY +FNP SWPS CAP+K DWI   +  CGDGD+YPEE+WNCADI ITSDG
Sbjct:  252 HQGYAEFNPDSWPSSCAPTKADWINELVGFCGDGDAYPEEFWNCADISITSDG 304
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D7FP25_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP25_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 8.690e-18
Identity = 37/54 (68.52%), Postives = 42/54 (77.78%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLAT-CGDGDSYPEEYWNCADIEITSDG 162
            H GY +FNP SWPS CAPSK DWI   +   CGDGD+YPEE+WNCAD+ ITSDG
Sbjct:  201 HQGYAEFNPPSWPSSCAPSKADWINEIVGQHCGDGDAYPEEFWNCADVSITSDG 254
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D7FZR0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR0_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.010e-17
Identity = 38/72 (52.78%), Postives = 47/72 (65.28%), Query Frame = 1 
Query:    4 HPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDGTSSDPAPAPTPESSTLAPI 219
            H GY++FNP SWPS CAP+KEDW+ T    CG G  YPEE+W C+D  IT D T     P+PTP   T+ P+
Sbjct:  254 HIGYEEFNPPSWPSACAPNKEDWVDTTREACGQGGYYPEEFWACSDFSITRDAT----PPSPTPSVETIPPV 321
[Close]
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 1.460e-17
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 MHPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEITSDGTSSDPAPAPTPESSTLAPIA 222
            MH GYD+F+P SWPS CAP+K DWI      CG+  +YPEE+W C+DI +TSDG++  P P  TP  +T  P+A
Sbjct:  250 MHIGYDEFDPPSWPSTCAPNKSDWIELNRYICGEEGAYPEEFWACSDISLTSDGSAPPPTPYTTP--TTPVPVA 321
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196503.5482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D8LM92_ECTSI2.330e-2168.25EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LM93_ECTSI3.020e-2050.52EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LD67_ECTSI8.200e-2069.81EsV-1-166 n=2 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JI36_9PHAE8.460e-2052.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LMF4_ECTSI1.630e-1971.70EsV-1-166 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KD35_9PHAE1.940e-1967.92CBM1 domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KTY6_9PHAE8.650e-1969.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FP25_ECTSI8.690e-1868.52EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FZR0_ECTSI1.010e-1752.78EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7FRE8_ECTSI1.460e-1752.70EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196503contigH-elongata_contig196503:143..1116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue6.1e-19
Seed eggNOG ortholog2880.D8LM92
EggNOG free text desc.Fungal-type cellulose-binding domain
EggNOG OGs2CZUJ@1,2SBQR@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size400
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196503.5482.1prot_H-elongata_contig196503.5482.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196503 143..1116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.674375-CDS-H-elongata_contig196503:142..3841622930113.674375-CDS-H-elongata_contig196503:142..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 143..384 -
1691679285.7777731-CDS-H-elongata_contig196503:142..3841691679285.7777731-CDS-H-elongata_contig196503:142..384Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 143..384 -
1622930113.7072995-CDS-H-elongata_contig196503:639..6751622930113.7072995-CDS-H-elongata_contig196503:639..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 640..675 -
1691679285.7885811-CDS-H-elongata_contig196503:639..6751691679285.7885811-CDS-H-elongata_contig196503:639..675Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 640..675 -
1622930113.7241294-CDS-H-elongata_contig196503:995..11161622930113.7241294-CDS-H-elongata_contig196503:995..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 996..1116 -
1691679285.800042-CDS-H-elongata_contig196503:995..11161691679285.800042-CDS-H-elongata_contig196503:995..1116Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196503 996..1116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196503.5482.1

>prot_H-elongata_contig196503.5482.1 ID=prot_H-elongata_contig196503.5482.1|Name=mRNA_H-elongata_contig196503.5482.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=133bp
MHPGYDDFNPTSWPSECAPSKEDWILTGLATCGDGDSYPEEYWNCADIEI
TSDGTSSDPAPAPTPESSTLAPIADEDPTPETFAPFAEMSTMETPAPVHE
IATKETLSPIAEIIVSETPAPVYKYSVMLETPT
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mRNA from alignment at H-elongata_contig196503:143..1116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196503.5482.1 ID=mRNA_H-elongata_contig196503.5482.1|Name=mRNA_H-elongata_contig196503.5482.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=974bp|location=Sequence derived from alignment at H-elongata_contig196503:143..1116- (Himanthalia elongata Himel1 dioecious)
ATGCACCCGGGGTACGACGACTTCAATCCTACTTCCTGGCCTAGCGAGTG
TGCCCCGAGCAAAGAAGACTGGATCCTTACCGGTCTGGCCACGTGTGGCG
ACGGCGACAGCTACCCCGAAGGCAAGGGACCCTCGCCACATGCACAAAGC
GTTTTGACACAAAGAAGGAATATGGCTCCGTCCTCAGGGGTTTCTTCCCG
TACGTCGTTTCAAGGGGGCACATAAAGCAATTTGCGTTGCTGTTGATTTC
CTTGCGCGCTGTGGAGGCGTCCTTGCGCACGCACTAGACGGTAATAAGAA
CACACAATACACCCTACCCAATAAGTTCTTCCCACGATCCAATCATTAAC
CTCCGCTTAAGCCGGCCAATATTATAGATAAATTATTTGCCAATTGTTTT
CTCTCTATACTGTTTTTGTACCTGATGTTTACTTGTAACAGAATACTGGA
ACTGCGCCGACATCGAGATCACGTCCGGTGAGTCGTCGGCATTCCGTCAA
TGGGCAGCGGTTGCCGAACATATAGTTATTTTTACCACGTCAAGTGAAAT
ACTAGGAGGTAAAGCCCTGAAATATCAACAAAGCGGTTGGTAAATATCCT
CTGGCTGGTATTAGAAGGAATATTTTACTATCTTCTAGGCCTATATGGCA
CGAACATTCTTACCCTACGCTTTTTTCACCCCAAATAGTATTGTCCGGTC
CTCCGGTGTTCTTATATTGCTCCCTCGAACAGACGGAACTTCCTCCGATC
CTGCTCCAGCACCGACTCCGGAATCTTCAACGCTTGCTCCGATCGCTGAC
GAAGACCCTACGCCGGAGACGTTCGCGCCTTTCGCTGAAATGTCTACCAT
GGAGACTCCGGCACCCGTCCACGAGATCGCCACCAAAGAAACACTCTCGC
CTATCGCCGAAATTATCGTGTCTGAGACGCCCGCGCCCGTCTACAAGTAT
TCGGTTATGCTGGAAACGCCCACG
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Coding sequence (CDS) from alignment at H-elongata_contig196503:143..1116-

>mRNA_H-elongata_contig196503.5482.1 ID=mRNA_H-elongata_contig196503.5482.1|Name=mRNA_H-elongata_contig196503.5482.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=798bp|location=Sequence derived from alignment at H-elongata_contig196503:143..1116- (Himanthalia elongata Himel1 dioecious)
ATGCACCCGGGGTACGACGACTTCAATCCTACTTCCTGGCCTAGCGAGTG
TGCCCCGAGCAAAGAAGACTGGATCCTTACCGGTCTGGCCACGTGTGGCG
ACGGCGACAGCTACCCCGAAGATGCACCCGGGGTACGACGACTTCAATCC
TACTTCCTGGCCTAGCGAGTGTGCCCCGAGCAAAGAAGACTGGATCCTTA
CCGGTCTGGCCACGTGTGGCGACGGCGACAGCTACCCCGAAGAATACTGG
AACTGCGCCGACATCGAGATCACGTCCGAATACTGGAACTGCGCCGACAT
CGAGATCACGTCCGACGGAACTTCCTCCGATCCTGCTCCAGCACCGACTC
CGGAATCTTCAACGCTTGCTCCGATCGCTGACGAAGACCCTACGCCGGAG
ACGTTCGCGCCTTTCGCTGAAATGTCTACCATGGAGACTCCGGCACCCGT
CCACGAGATCGCCACCAAAGAAACACTCTCGCCTATCGCCGAAATTATCG
TGTCTGAGACGCCCGCGCCCGTCTACAAGTATTCGGTTATGCTGGAAACG
CCCACGACGGAACTTCCTCCGATCCTGCTCCAGCACCGACTCCGGAATCT
TCAACGCTTGCTCCGATCGCTGACGAAGACCCTACGCCGGAGACGTTCGC
GCCTTTCGCTGAAATGTCTACCATGGAGACTCCGGCACCCGTCCACGAGA
TCGCCACCAAAGAAACACTCTCGCCTATCGCCGAAATTATCGTGTCTGAG
ACGCCCGCGCCCGTCTACAAGTATTCGGTTATGCTGGAAACGCCCACG
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