mRNA_H-elongata_contig19639.5475.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19639.5475.1
Unique NamemRNA_H-elongata_contig19639.5475.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: D7G2X4_ECTSI (Proteasome Alpha Subunit family member n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X4_ECTSI)

HSP 1 Score: 326 bits (836), Expect = 8.360e-105
Identity = 194/320 (60.62%), Postives = 213/320 (66.56%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYKVAR----REREVAEYPVAHGDNRHA---------------------DDERRGQKCRGSE-----GGESGKLLLEN----------ASSENGERIESEDLGAGVTVSESEGPPNANGHERSVIGLGVVGEEETVQLALQALSKVS 840
            YDADLTLFSPEGRLYQVEYVMRAVGHYGCP+VGVHGE CCVV CKRDLPD+LVY DSVTSIFRITD IYSAATGM+GDVRYQVKRARLQALEYKRQYGS MPSRLLALAMADAAQVNTQHAA+RPMACVSLIISVDDPTGP L R+EPSGQVFQAWGTA GRGSA S +FLEEA K A     R     E   + G + H                      DD+ +G+    +      G   G  + ++             E   R    + G  +T    E  P   G   +  G GVVGE ETV+LALQALSK S
Sbjct:   16 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPAVGVHGEGCCVVACKRDLPDELVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSSMPSRLLALAMADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAVGRGSAASSDFLEEALKAAASRDGRGNSRQESTSSVGGDEHRTPDKDYFPGVPNPSVMNAEKEDDDGQGRTTSDAPAHEIVGDREGDEISDDDVDADNVDVQGPDEETHRKRGSEAGGKMTEPSDESTPGDGGEIGT--GFGVVGEMETVELALQALSKRS 333
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A6H5JKK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKK2_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 9.380e-86
Identity = 176/326 (53.99%), Postives = 204/326 (62.58%), Query Frame = 1 
Query:  127 VCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYKVA-----RREREVAEYPVAHGDNRHADD---------------ERRGQKCRGSE-----------GGESGKLLLENASSENGE---------RIESEDLGAGVTVSESEGPPNANGHERSVIGLGVVGEEETVQLALQALSKVSSSEGPAALNCENVEVAIASRDSG-IRVCSRTEVKGFLGRMACSPGFPP 981
            +C++D   +LVY DSVTSIFRITD IYSAATGM+GDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAA+RPMACVSLIISVDDPTGP L R+EPSGQVFQAWGTAAGRGSA S +FLEEA K       R            GD     D               E++G   +G             G E  ++  ++  ++N +         R    + G  +     E  P   G   +  G GVVGE ETV+LALQALSK SS +G  AL   NVE+ IAS+ +G +RVCSR EVKGFLG+M  S   PP
Sbjct:   21 ICRQD---ELVYPDSVTSIFRITDDIYSAATGMTGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAALRPMACVSLIISVDDPTGPALFRIEPSGQVFQAWGTAAGRGSAASSDFLEEALKAGATRDGRGNSRQDSTSSGGGDEHRTQDKDYFPGVPKTSVTNVEKKGDDGQGHTTSDAPAHEIVGGREGNEISADDVDADNVDVQGPDEETHRRRGSEAGGKMREPPDESTPVDGGEIGT--GFGVVGEMETVELALQALSKASSGKGAPALTDRNVEIVIASKQTGKVRVCSRKEVKGFLGKMTFSADCPP 341
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A0S7HU11_9TELE (Proteasome subunit alpha type n=11 Tax=Poeciliinae TaxID=586240 RepID=A0A0S7HU11_9TELE)

HSP 1 Score: 150 bits (379), Expect = 2.150e-38
Identity = 78/176 (44.32%), Postives = 111/176 (63.07%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            +D  +T+FSPEGRLYQVEY  +A+   G  SVG+ G+ C VVV ++ +PD L+ A +VT +FRITD+I    TGM+ D R QV+RAR +A  +  +YG  +P  +L   MAD +QV TQ+A MRP+ C  ++I +D+  GP L + +P+G       TAAG     +  FLE+  K
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGMTSVGIRGKDCAVVVTQKKVPDKLLDATTVTQLFRITDSIGCVMTGMTADSRSQVQRARYEAANWNYKYGYEIPVDMLCKRMADISQVYTQNAEMRPLGCCMVVIGMDEELGPQLYKCDPAGYYCGFKATAAGVKQTEATGFLEKKVK 184
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A067BYZ3_SAPPC (Proteasome subunit alpha type n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BYZ3_SAPPC)

HSP 1 Score: 149 bits (377), Expect = 3.720e-38
Identity = 76/176 (43.18%), Postives = 113/176 (64.20%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            YD  +T+FSP+GRLYQ+EY  +AV      SV V G   CVVV ++ +PD L+  DSVT+IF+IT  I    TG+  D + QV+R R +A +++ +YG P+P  +LA  +AD +QV TQHA+MR +  V+++ISVD+  GP L +++P+G  +    TAAG     +  +LE+  K
Sbjct:    6 YDRHITIFSPDGRLYQIEYAFKAVKESSLTSVAVRGAKSCVVVTQKKVPDKLIDPDSVTNIFKITPLIGCLMTGLYADAKAQVQRLRYEAHDFEHKYGYPVPCHVLAKRLADISQVYTQHASMRALGVVTMLISVDEEKGPQLYKIDPAGHFWGYKATAAGVKDQEATNYLEKKIK 181
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A8B6XLJ5_HYDVU (Proteasome subunit alpha type n=2 Tax=Hydra vulgaris TaxID=6087 RepID=A0A8B6XLJ5_HYDVU)

HSP 1 Score: 149 bits (376), Expect = 5.770e-38
Identity = 75/176 (42.61%), Postives = 113/176 (64.20%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            YD  +T+FSPEGRLYQVEY  +A+   G  S+GV G  C VVV ++ +PD L+ A ++T +F+IT T+    TGM  D RYQV+RAR+ A E+K ++G  + + +L   +AD +Q+ TQ+A MRP+AC  ++I VD+   PLL + +P+G       T+AG     +  +LE+ +K
Sbjct:    9 YDRYITVFSPEGRLYQVEYAFKAINQGGTTSIGVRGNDCAVVVTQKKVPDKLLDASTMTQMFKITSTVGCVMTGMMADCRYQVQRARMIAAEWKYKFGYDISAEMLCRRIADISQIYTQNAEMRPLACCMILIGVDEDGNPLLYKTDPAGYFCGYKATSAGVKQNEANSYLEKKFK 184
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A665W138_ECHNA (Proteasome subunit alpha type n=2 Tax=Percomorphaceae TaxID=1489872 RepID=A0A665W138_ECHNA)

HSP 1 Score: 147 bits (372), Expect = 5.870e-38
Identity = 77/191 (40.31%), Postives = 118/191 (61.78%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYKVARREREVAEYPVAH 573
            +D  +T+FSPEGRLYQVEY  +A+   G  SV V G+ C VVV ++ +PD L+ A +VT +FRITD I    +GM+ D R QV+RAR +A  ++ +YG  +P  +L   +AD +QV TQ+A MRP+ C  ++I +D+  GP + + +P+G       TAAG     +  FLE+ + + + +++   Y V H
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQKKVPDKLLDAATVTHLFRITDNIGCVMSGMTADSRSQVQRARYEAANWQYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMIVIGIDEEYGPQVYKCDPAGYYCGFKATAAGVKQTEATSFLEKKFDLIQLKQKCNNYYVFH 199
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A3P9NTE6_POERE (Proteasome subunit alpha type n=1 Tax=Poecilia reticulata TaxID=8081 RepID=A0A3P9NTE6_POERE)

HSP 1 Score: 147 bits (372), Expect = 7.610e-38
Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            +D  +T+FSPEGRLYQVEY  +A+   G  SVG+ G+ C V+V ++ +PD L+ A +VT +F+ITD I    TGM+ D R QV+RAR +A  +  +YG  +P  +L   MAD +QV TQ+A MRP+ C  ++I +D+  GP L + +P+G       TA+G     +  FLE+  K
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGMTSVGIRGKDCAVIVTQKKVPDKLLDASTVTQLFKITDNIGCVMTGMTADSRSQVQRARYEAANWNYKYGYEIPVDMLCKRMADISQVYTQNAEMRPLGCCMVVIGMDEELGPQLYKCDPAGYYCGFKATASGVKQTEATGFLEKKVK 184
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A4D9F3X6_9SAUR (Proteasome subunit alpha type n=3 Tax=Sauria TaxID=32561 RepID=A0A4D9F3X6_9SAUR)

HSP 1 Score: 149 bits (375), Expect = 8.010e-38
Identity = 77/176 (43.75%), Postives = 111/176 (63.07%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            +D  +T+FSPEGRLYQVEY  +A+   G  SV V G+ C V+V ++ +PD L+ + +VT +FRIT+TI    TGM+ D R QV+RAR +A  +K +YG  +P  +L   +AD +QV TQ+A MRP+ C  ++I VD+  GP + + +P+G       TAAG     S  FLE+  K
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFRITETIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPVDMLCKRIADISQVYTQNAEMRPLGCCMILIGVDEEHGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKKVK 184
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BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A3B5M4E1_9TELE (Proteasome subunit alpha type n=2 Tax=Xiphophorus couchianus TaxID=32473 RepID=A0A3B5M4E1_9TELE)

HSP 1 Score: 147 bits (372), Expect = 9.850e-38
Identity = 77/176 (43.75%), Postives = 109/176 (61.93%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            +D  +T+FSPEGRLYQVEY  +A+   G  SVG+ G+ C VVV ++ +PD L+   +VT +FRITD I    TGM+ D R QV+RAR +A  +  +YG  +P  +L   MAD +QV TQ+A MRP+ C  ++I +D+  GP L + +P+G       TAAG     +  FLE+  K
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGMTSVGIRGKDCAVVVTQKKVPDKLLDDTTVTQLFRITDNIGCVMTGMTADSRSQVQRARYEAANWNYKYGYEVPVDMLCKRMADISQVYTQNAEMRPLGCCMVVIGMDEELGPQLYKCDPAGYYCGFKATAAGVKQTEATGFLEKKIK 184
[Close]
BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Match: A0A1A8U241_NOTFU (Proteasome subunit alpha type n=6 Tax=Percomorphaceae TaxID=1489872 RepID=A0A1A8U241_NOTFU)

HSP 1 Score: 148 bits (374), Expect = 1.110e-37
Identity = 77/176 (43.75%), Postives = 111/176 (63.07%), Query Frame = 1 
Query:    1 YDADLTLFSPEGRLYQVEYVMRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYSAATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQHAAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEFLEEAYK 528
            +D  +T+FSPEGRLYQVEY  +A+   G  SV V G+ C VVV ++ +PD L+ A +VT +FRITDTI    +GM+ D R QV+RAR +A  ++ +YG  +P  +L   +AD +QV TQ+A MRP+ C  ++I VD+  GP + + +P+G       TAAG     +  FLE+  K
Sbjct:    9 FDRHITIFSPEGRLYQVEYAFKAINQGGLTSVAVRGKDCAVVVTQKKVPDKLLDASTVTHLFRITDTIGCVMSGMTADSRSQVQRARYEAANWQYKYGYEIPVDMLCKRIADVSQVYTQNAEMRPLGCCMIVIGVDEEFGPQVYKCDPAGYYCGFKATAAGVKQTEATSFLEKKVK 184
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19639.5475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2X4_ECTSI8.360e-10560.63Proteasome Alpha Subunit family member n=1 Tax=Ect... [more]
A0A6H5JKK2_9PHAE9.380e-8653.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0S7HU11_9TELE2.150e-3844.32Proteasome subunit alpha type n=11 Tax=Poeciliinae... [more]
A0A067BYZ3_SAPPC3.720e-3843.18Proteasome subunit alpha type n=4 Tax=Saprolegniac... [more]
A0A8B6XLJ5_HYDVU5.770e-3842.61Proteasome subunit alpha type n=2 Tax=Hydra vulgar... [more]
A0A665W138_ECHNA5.870e-3840.31Proteasome subunit alpha type n=2 Tax=Percomorphac... [more]
A0A3P9NTE6_POERE7.610e-3842.61Proteasome subunit alpha type n=1 Tax=Poecilia ret... [more]
A0A4D9F3X6_9SAUR8.010e-3843.75Proteasome subunit alpha type n=3 Tax=Sauria TaxID... [more]
A0A3B5M4E1_9TELE9.850e-3843.75Proteasome subunit alpha type n=2 Tax=Xiphophorus ... [more]
A0A1A8U241_NOTFU1.110e-3743.75Proteasome subunit alpha type n=6 Tax=Percomorphac... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19639contigH-elongata_contig19639:2091..5997 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score294.3
Seed ortholog evalue6.8e-77
Seed eggNOG ortholog2880.D7G2X4
Preferred namePSMA6
KEGG koko:K02730
KEGG Pathwayko03050,map03050
KEGG ModuleM00337,M00340
GOsGO:0000502,GO:0000932,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0003824,GO:0004175,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005773,GO:0005774,GO:0005829,GO:0005839,GO:0005840,GO:0005844,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0007088,GO:0007275,GO:0007346,GO:0007517,GO:0007519,GO:0008134,GO:0008150,GO:0008152,GO:0008233,GO:0009056,GO:0009057,GO:0009888,GO:0009889,GO:0009896,GO:0009987,GO:0010035,GO:0010038,GO:0010043,GO:0010468,GO:0010498,GO:0010499,GO:0010556,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0014706,GO:0016020,GO:0016363,GO:0016579,GO:0016787,GO:0019219,GO:0019222,GO:0019538,GO:0019773,GO:0019941,GO:0022626,GO:0030016,GO:0030017,GO:0030071,GO:0030163,GO:0031090,GO:0031323,GO:0031326,GO:0031331,GO:0031347,GO:0031597,GO:0031974,GO:0031981,GO:0032101,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034399,GO:0034515,GO:0035639,GO:0035770,GO:0036211,GO:0036464,GO:0042175,GO:0042221,GO:0042788,GO:0043161,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043412,GO:0043632,GO:0043687,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050727,GO:0050789,GO:0050794,GO:0050896,GO:0051059,GO:0051090,GO:0051091,GO:0051092,GO:0051128,GO:0051130,GO:0051171,GO:0051247,GO:0051252,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060255,GO:0060537,GO:0060538,GO:0061061,GO:0062033,GO:0065007,GO:0065009,GO:0070011,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0080090,GO:0080134,GO:0090068,GO:0097159,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1903506,GO:1905368,GO:1905369,GO:1905818,GO:1905820,GO:1990904,GO:2000112,GO:2001141,GO:2001252
EggNOG free text desc.threonine-type endopeptidase activity
EggNOG OGsCOG0638@1,KOG0182@2759
EC3.4.25.1
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01002,ko03051
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProteasome Alpha Subunit family member
Ec32 orthologEc-09_004580.1
Exons8
Model size1582
Cds size936
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19639.5475.1prot_H-elongata_contig19639.5475.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19639 2151..5411 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.0186276-UTR-H-elongata_contig19639:2090..21501622930113.0186276-UTR-H-elongata_contig19639:2090..2150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19639 2091..2150 +
1691679285.472149-UTR-H-elongata_contig19639:2090..21501691679285.472149-UTR-H-elongata_contig19639:2090..2150Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19639 2091..2150 +
1622930113.1771495-UTR-H-elongata_contig19639:5411..59971622930113.1771495-UTR-H-elongata_contig19639:5411..5997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19639 5412..5997 +
1691679285.5761147-UTR-H-elongata_contig19639:5411..59971691679285.5761147-UTR-H-elongata_contig19639:5411..5997Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19639 5412..5997 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930113.043546-CDS-H-elongata_contig19639:2150..22371622930113.043546-CDS-H-elongata_contig19639:2150..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 2151..2237 +
1691679285.4896998-CDS-H-elongata_contig19639:2150..22371691679285.4896998-CDS-H-elongata_contig19639:2150..2237Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 2151..2237 +
1622930113.0724623-CDS-H-elongata_contig19639:2587..26861622930113.0724623-CDS-H-elongata_contig19639:2587..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 2588..2686 +
1691679285.5026498-CDS-H-elongata_contig19639:2587..26861691679285.5026498-CDS-H-elongata_contig19639:2587..2686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 2588..2686 +
1622930113.0921915-CDS-H-elongata_contig19639:3033..31321622930113.0921915-CDS-H-elongata_contig19639:3033..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3034..3132 +
1691679285.5108814-CDS-H-elongata_contig19639:3033..31321691679285.5108814-CDS-H-elongata_contig19639:3033..3132Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3034..3132 +
1622930113.1078935-CDS-H-elongata_contig19639:3528..35841622930113.1078935-CDS-H-elongata_contig19639:3528..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3529..3584 +
1691679285.5191584-CDS-H-elongata_contig19639:3528..35841691679285.5191584-CDS-H-elongata_contig19639:3528..3584Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3529..3584 +
1622930113.122335-CDS-H-elongata_contig19639:3835..39021622930113.122335-CDS-H-elongata_contig19639:3835..3902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3836..3902 +
1691679285.5305421-CDS-H-elongata_contig19639:3835..39021691679285.5305421-CDS-H-elongata_contig19639:3835..3902Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 3836..3902 +
1622930113.1360383-CDS-H-elongata_contig19639:4200..45661622930113.1360383-CDS-H-elongata_contig19639:4200..4566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 4201..4566 +
1691679285.5465736-CDS-H-elongata_contig19639:4200..45661691679285.5465736-CDS-H-elongata_contig19639:4200..4566Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 4201..4566 +
1622930113.149399-CDS-H-elongata_contig19639:4956..50301622930113.149399-CDS-H-elongata_contig19639:4956..5030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 4957..5030 +
1691679285.557322-CDS-H-elongata_contig19639:4956..50301691679285.557322-CDS-H-elongata_contig19639:4956..5030Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 4957..5030 +
1622930113.1613984-CDS-H-elongata_contig19639:5323..54111622930113.1613984-CDS-H-elongata_contig19639:5323..5411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 5324..5411 +
1691679285.5666394-CDS-H-elongata_contig19639:5323..54111691679285.5666394-CDS-H-elongata_contig19639:5323..5411Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19639 5324..5411 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19639.5475.1

>prot_H-elongata_contig19639.5475.1 ID=prot_H-elongata_contig19639.5475.1|Name=mRNA_H-elongata_contig19639.5475.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=312bp
MRAVGHYGCPSVGVHGEACCVVVCKRDLPDDLVYADSVTSIFRITDTIYS
AATGMSGDVRYQVKRARLQALEYKRQYGSPMPSRLLALAMADAAQVNTQH
AAMRPMACVSLIISVDDPTGPLLMRVEPSGQVFQAWGTAAGRGSATSVEF
LEEAYKVARREREVAEYPVAHGDNRHADDERRGQKCRGSEGGESGKLLLE
NASSENGERIESEDLGAGVTVSESEGPPNANGHERSVIGLGVVGEEETVQ
LALQALSKVSSSEGPAALNCENVEVAIASRDSGIRVCSRTEVKGFLGRMA
CSPGFPPKLGR*
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mRNA from alignment at H-elongata_contig19639:2091..5997+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19639.5475.1 ID=mRNA_H-elongata_contig19639.5475.1|Name=mRNA_H-elongata_contig19639.5475.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3907bp|location=Sequence derived from alignment at H-elongata_contig19639:2091..5997+ (Himanthalia elongata Himel1 dioecious)
TACGACGCGGACCTCACGCTTTTTTCGCCCGAGGGCAGGCTGTACCAAGT
GGAGTATGTCATGCGAGCCGTGGGTCACTACGGTTGTCCTTCAGTGGGTG
TGCACGGAGAAGCCTGCTGCGTCGTCGTGTGCAAGCGGGACTTGCCGGTA
GAGGAAAATCCGTCCCCCGACCCCTAGAAAATTGTCGGTAGGCTTTGCCA
TCGGTGTTTGCCATATGTATTAATACACCTCGGGTGGTACGGATAGGGAC
GTACCTTCAAGCACCGGATATTGCCACCCTAGAAAATATTCCATCAGATT
GTTAGTCTTTCGTCATATGTTGTTTCCGTCTTCAGCTCAGCTTCCGTCGA
AAGCCTCAGCAAGTGACAGCAAACAACACGGGTAGACCTCTGGGTGTGTC
GAAGCCACGGTGCACTGTCGCGTCGCTCTTGTCCTGTACATCAAAGACTC
GCCAGGACCCCGCGCCTCTTTCGTCTGTGTTAATCACCCTTGGGCAGGAT
GATCTGGTCTACGCTGACTCGGTTACCAGCATCTTCAGAATAACGGATAC
TATATACTCCGCGGCAACCGGTATGTCGGGGGACGTGCGGTACCAGGTAG
GGAGAAGAAACGAAGAGGACACTCGCCGGTTTGGAGTAAAGTGCAAAGCT
CTAACGTGCATATGCCTGCGGGGTAGATTCGAGGGGTTCGAGGTGCAGGG
TTAGCCGCGAAATATTATATTCTGTTCGCGATTTTGGTAAAATGGGTAGC
GAGATGCGCTCATCGCCCTAGATAGCCATATCGACTACTGCAGCCGCGCG
CATTTTAATTATCGGTCTATCAGTATCAAGGGGTGGGGCTGTGTCATTCG
AAAATCCCGACCTACTAAATACCGAGCGGGGTTCCTGTTAAGGTAAGGAA
AGTTATTGTGTCTGTACCGCACGCCGTGTTTTATATGCGATAGGTGAAGC
GAGCGAGGCTGCAGGCGTTGGAGTACAAGCGACAATATGGCAGTCCCATG
CCTTCGCGCTTGCTCGCGCTCGCCATGGCTGACGCAGCCCAGGTGAGGGG
AATGTGATGACCCCCGTCTTCAAAAAGCAGTATTGGATTTCGCACCGTTT
AAGACAGTTCCGTTCGGCATCGCAGCCGATCACACGTCGAATAAGTTCTG
GATTATATCGACTAACACGTGGGTGGGAGTTTCTGCAACGAAAGTCACAA
TGTACAAATTAGCAGACCTCGCAGCTTTTATCTTGGACATTCCTTGTCCC
GCAAGACTGGGTGCCGAGCTAACATCCTTATTTCTTGAGATTGTTACTCT
CCCTGCTGAAGCGATCACGTCTCACCACATTATTACTACTGAGCGGCCTG
ATCATAGACCTTGGTCCTACGCGTGCAGTTCGACACCAACCCGGTCGCCG
ATCTGCTCCTTGTGCACGCGATGTCCATATCCCCGCAGGTGAACACTCAG
CATGCGGCGATGCGCCCAATGGCCTGCGTATCCCTGATAATCAGGTAATA
CTCCATCTCTGTCCTTTGTGCCGTCGAGTCATCGCTCCCCAGAGCGCAAA
CTCTGACGTCGGTAAATGTTCCGTCTACTCACAACAAAACCCCCTGTTGT
GATAATCCCCAAAGCAGCGCCGCTGGGCGTAAGGGAAACGCGCAAAGCTC
TTGTCGGGGTCGGGGTATTAACGCCTTCGGTATATATTTGGTCGGTCGTA
AAACGTACCCTGAGAAGGCAAATCGTCCTCGTCCGCTTGCCGCAGCGTGG
ATGACCCTACCGGTCCACTCCTGATGCGAGTCGAACCCTCTGGACAGGTT
TTTCAGGCGTGGGTGAGTGGCTAGAGTGCGATAAGGGCTTCACAGAGATG
CATCCTCATCGTCCCGATCGCGATATTTCTGTGGTTGAATTCGCGTAGAG
CCTTGTGGAGAAACGTGTAGCGATATCCTCCTGCCGCCAAGCCTCGTATA
ATAGTAAGTATTTGAAGAACTACGTTTGATATTAACTATGTGCAAATGAG
GGATATATCTCTGACAAAGCTTCTGAATCACTGTGCAAGATTACACCCTT
GTCCGCATCAAACGGAACCTGAAACGTCTGCCTTTTGTTCGTACTCACCA
TCGGCAACAGGGAACGGCAGCGGGAAGAGGAAGCGCGACGTCCGTTGAGT
TTCTTGAAGAGGCCTACAAGGTAGCAAGGCGGGAACGAGAAGTTGCGGAG
TATCCCGTCGCTCACGGCGACAACAGACACGCCGATGACGAGCGCCGTGG
TCAAAAGTGTAGAGGATCGGAGGGTGGTGAAAGTGGCAAGTTGCTCTTAG
AAAATGCTTCTTCTGAAAATGGAGAACGAATCGAGAGTGAAGATCTGGGC
GCGGGTGTGACGGTTAGTGAGTCGGAAGGGCCGCCGAATGCGAACGGCCA
TGAGCGGTCCGTGATCGGGCTTGGCGTGGTGGGAGAGGAAGAGACGGTCC
AGCTTGCACTACAGGCGTTGTCCAAGGTGTGAGAGCGTGTTTGCGACAAA
ACACGAGAACGCTTCCATGTCTCGAGCGCTACAGTGGTGTTTGGAATACC
TTGGTGAATGAGAGGGATAAAGTACCGCATATTCTAGAGGCGGCTGAACC
GTTTCAAGTGCATTTATGTAGGTATCGTTTACGTGAGTCACAACCTCTCG
CTTCTGCAAGGGGGCGCTCGCAATTATTTTCGCTACATTTTATAGTATCA
TTTAAGGCACTGCGGGGAGAATTCGGGGAAAGGAAGACGATACGACCTTT
CGTCCCTTCTAGGCGCGATCGATCCCAACATGAGTTTCGTCCGTGGAATA
CGCCAGTGCCGTATGTTTTTCTGGAAAACCGAAAAACTATGCCCAATGCC
GCCGTTATCTTTACAGGTCTCTTCGAGCGAGGGCCCCGCTGCACTCAACT
GCGAAAACGTGGAGGTCGCCATTGCTTCCAGAGACAGCGGGTGAGTAAAA
CCAGTGCTGTACTTCATAACCGTGCATTATTTCTAGGGCCTCCTCGGATT
GTTATCTTAGCAGTACACACACTTTTGGCAAGTCATCATTTTAAATCTTG
ACGCGCGTTCATTCGGTCACCTCTTTGTGAAGCCAGCGTGTTCCTCACGG
TGTCCGGAAAGCATCGCCTTGACAATTGCTCCGTACGGCACAAGTAGCAT
TGGAGGTTATCTGTGCTGCATCGTGTACTCGTGGCTGCCGTGATAGCTCG
AGTTTTTTTAAAATATTTCGAACTTGTCCGCAGGATCCGAGTTTGCTCCA
GGACAGAGGTGAAGGGTTTCTTGGGAAGGATGGCGTGCTCTCCGGGGTTT
CCGCCAAAATTGGGACGATAGCGGTCACACGCGTCTTCGCCATCTTATGA
GTTGCTTCAAGGATTAGGATTTTAGTTCGCAGACGCTACACAAATAAACG
CGGCCATAAAACCATTTCCCCCACTTTTATGGGTACTATCTACATCAGCG
CCCAGTAGGTTTTTGTGACGTCACGGCGTTCAAGCACGACGGGCAGTAAT
ATCACGGAGAGGAAGAGCAGTTGTCATAAAATATGGGCTGGTGATTGTTT
CAAGACGAAAGTCTGAAGCATTCTACTCTTCAAGCTCGTGCTGCATCTGC
TGGGACTGACTTGATCATACATCTGAATGAAACTTATGGTGTTCGGCACT
TCGAAGAACGGACTCGCGCAGAGGTGGTGCTTGATCATTTTGCCATGCCG
AGACTGTTGACGGATGCTTCCCCGTGGCCCCTGTCGGGAATTTTATCGCG
GTCGTAGTGTTGATTTTTACGACGTATTGGCGAACAGATTCCGACAGGAA
AACTCTCCCATGCTTACCTAAGATCCATCAAAACAACTAACCACTTGTCG
AGGCGGTGTTACGCTGGACAAGATTGATCATCAAAGCTTAAAATATCAAA
TGCTGCC
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Coding sequence (CDS) from alignment at H-elongata_contig19639:2091..5997+

>mRNA_H-elongata_contig19639.5475.1 ID=mRNA_H-elongata_contig19639.5475.1|Name=mRNA_H-elongata_contig19639.5475.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1872bp|location=Sequence derived from alignment at H-elongata_contig19639:2091..5997+ (Himanthalia elongata Himel1 dioecious)
ATGCGAGCCGTGGGTCACTACGGTTGTCCTTCAGTGGGTGTGCACGGAGA
AGCCTGCTGCGTCGTCGTGTGCAAGCGGGACTTGCCGATGCGAGCCGTGG
GTCACTACGGTTGTCCTTCAGTGGGTGTGCACGGAGAAGCCTGCTGCGTC
GTCGTGTGCAAGCGGGACTTGCCGGATGATCTGGTCTACGCTGACTCGGT
TACCAGCATCTTCAGAATAACGGATACTATATACTCCGCGGCAACCGGTA
TGTCGGGGGACGTGCGGTACCAGGATGATCTGGTCTACGCTGACTCGGTT
ACCAGCATCTTCAGAATAACGGATACTATATACTCCGCGGCAACCGGTAT
GTCGGGGGACGTGCGGTACCAGGTGAAGCGAGCGAGGCTGCAGGCGTTGG
AGTACAAGCGACAATATGGCAGTCCCATGCCTTCGCGCTTGCTCGCGCTC
GCCATGGCTGACGCAGCCCAGGTGAAGCGAGCGAGGCTGCAGGCGTTGGA
GTACAAGCGACAATATGGCAGTCCCATGCCTTCGCGCTTGCTCGCGCTCG
CCATGGCTGACGCAGCCCAGGTGAACACTCAGCATGCGGCGATGCGCCCA
ATGGCCTGCGTATCCCTGATAATCAGGTGAACACTCAGCATGCGGCGATG
CGCCCAATGGCCTGCGTATCCCTGATAATCAGCGTGGATGACCCTACCGG
TCCACTCCTGATGCGAGTCGAACCCTCTGGACAGGTTTTTCAGGCGTGGC
GTGGATGACCCTACCGGTCCACTCCTGATGCGAGTCGAACCCTCTGGACA
GGTTTTTCAGGCGTGGGGAACGGCAGCGGGAAGAGGAAGCGCGACGTCCG
TTGAGTTTCTTGAAGAGGCCTACAAGGTAGCAAGGCGGGAACGAGAAGTT
GCGGAGTATCCCGTCGCTCACGGCGACAACAGACACGCCGATGACGAGCG
CCGTGGTCAAAAGTGTAGAGGATCGGAGGGTGGTGAAAGTGGCAAGTTGC
TCTTAGAAAATGCTTCTTCTGAAAATGGAGAACGAATCGAGAGTGAAGAT
CTGGGCGCGGGTGTGACGGTTAGTGAGTCGGAAGGGCCGCCGAATGCGAA
CGGCCATGAGCGGTCCGTGATCGGGCTTGGCGTGGTGGGAGAGGAAGAGA
CGGTCCAGCTTGCACTACAGGCGTTGTCCAAGGGAACGGCAGCGGGAAGA
GGAAGCGCGACGTCCGTTGAGTTTCTTGAAGAGGCCTACAAGGTAGCAAG
GCGGGAACGAGAAGTTGCGGAGTATCCCGTCGCTCACGGCGACAACAGAC
ACGCCGATGACGAGCGCCGTGGTCAAAAGTGTAGAGGATCGGAGGGTGGT
GAAAGTGGCAAGTTGCTCTTAGAAAATGCTTCTTCTGAAAATGGAGAACG
AATCGAGAGTGAAGATCTGGGCGCGGGTGTGACGGTTAGTGAGTCGGAAG
GGCCGCCGAATGCGAACGGCCATGAGCGGTCCGTGATCGGGCTTGGCGTG
GTGGGAGAGGAAGAGACGGTCCAGCTTGCACTACAGGCGTTGTCCAAGGT
CTCTTCGAGCGAGGGCCCCGCTGCACTCAACTGCGAAAACGTGGAGGTCG
CCATTGCTTCCAGAGACAGCGGGTCTCTTCGAGCGAGGGCCCCGCTGCAC
TCAACTGCGAAAACGTGGAGGTCGCCATTGCTTCCAGAGACAGCGGGATC
CGAGTTTGCTCCAGGACAGAGGTGAAGGGTTTCTTGGGAAGGATGGCGTG
CTCTCCGGGGTTTCCGCCAAAATTGGGACGATAGGATCCGAGTTTGCTCC
AGGACAGAGGTGAAGGGTTTCTTGGGAAGGATGGCGTGCTCTCCGGGGTT
TCCGCCAAAATTGGGACGATAG
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