mRNA_H-elongata_contig19627.5471.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JQH5_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQH5_9PHAE) HSP 1 Score: 165 bits (417), Expect = 1.450e-42 Identity = 105/273 (38.46%), Postives = 154/273 (56.41%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIR 798
T+NVRT++ G N GH ++ A +CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G G E I RL+KV TF+VGYAPT+TA K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L AA+ +L +++T+ TPK G + KE HR LD+IL+RQ DRRLVRN +V S+H LV ++R
Sbjct: 94 TFNVRTLAYSGRNPIGHNVMTVMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 360
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KV75_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV75_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.580e-42 Identity = 102/274 (37.23%), Postives = 154/274 (56.20%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
T+NVRT++ G N GH ++ + CD I +Q TRR G+ I ++ S G K G+ GVG+V++E++ ++G +G E I RL+KV F+VGYAPT+T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L A++ +L + +T+ TPK G + KE +R LD+IL+RQ DRR VRN++V S+H LV ++RL
Sbjct: 85 TFNVRTLACSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIVIKEAMWESVGEEGRTVECICPRLMKVRLQIGRTCGVAFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 352
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 160 bits (404), Expect = 1.320e-41 Identity = 101/274 (36.86%), Postives = 154/274 (56.20%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
T+NVRT++ G N GH ++ + CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G +G E I RL+KV TF+VGYAPT+T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L A++ +L + +T+ TPK G + KE +R LD+I +RQ DRR VRN++V S+H+LV ++RL
Sbjct: 179 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFIFMRQADRRFVRNVSVKRVDFKDSDHKLVLTTVRL 446
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JMB4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMB4_9PHAE) HSP 1 Score: 156 bits (395), Expect = 3.880e-40 Identity = 96/255 (37.65%), Postives = 145/255 (56.86%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITV 750
T+NVRT++ G N GH ++ + CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G +G E I RL+KV TF+VGYAPT+T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L A++ +L + +T++ TPK G + KE +R LD IL+RQ DRR VRN++V
Sbjct: 90 TFNVRTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRRAGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYVQTPKGGVQHTFQSSNKGKEKYR--LDLILMRQTDRRFVRNVSV 338
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE) HSP 1 Score: 155 bits (392), Expect = 3.070e-39 Identity = 100/274 (36.50%), Postives = 152/274 (55.47%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
T+NV T++ G N GH ++ + CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G +G E I RL+KV TF+V YAPT+T T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L A++ +L + +T+ TPK G + KE +R LD+IL+RQ DRR VRN++V S+H LV ++RL
Sbjct: 661 TFNVCTLAYSGRNPIGHNVMTVMQICSATGCDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVRYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 928
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KDS6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDS6_9PHAE) HSP 1 Score: 149 bits (377), Expect = 3.800e-39 Identity = 104/274 (37.96%), Postives = 146/274 (53.28%), Query Frame = 1
Query: 1 VATWNVRTMSERGTNDPGHAEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFK-HRAATTFIVGYAPTKTAATCHKSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHP------KMKSNHRLVSVSIRL 801
VATWNVRT++ G N G A +L AA+ + + +Q TRR GRT + AA V C C + G G+ GVG+ V+ES+ + + E I E L+ + + HR A F+ YAPT+ + K FW +L S V +P+ + + ++MDANARTG R +G GD RV+G YGRD ++DNG+ +L A +L + +TF T K G TY G + LDYIL RQ V N+ V P K S+H +V +I L
Sbjct: 115 VATWNVRTLAVNGANGYGRAYSVLHEAARQDVSVVGMQETRRAGRT--EFAAAGFRVFC---CGTETG--GVHGVGIAVKESLCK---TSTFTTEFIDESLMAMRFLLAGHRGAVNFVAAYAPTEPSTADSKRVFWGKLDSLVRRIPSKECVHVLMDANARTGDRLDG---GDGRVIGMYGRDELNDNGMLLLNFATGNRLALTNTFFETRKGG---IWHTYNGVSGNDCKRLDYILTRQAHHGRVSNVVVIPQPVRPVKADSDHNMVVATINL 372
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 144 bits (362), Expect = 1.260e-38 Identity = 90/230 (39.13%), Postives = 136/230 (59.13%), Query Frame = 1
Query: 67 LLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVR 738
++ A +CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G G E I RL+KV TF+VGYAPT+TA K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L AA+ +L +++T++ TPK G ++ + +G KE HR LD+IL+RQ DRRLVR
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYIRTPK-GVHTFQSSNKG-KEKHR--LDFILMRQTDRRLVR 224
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5JVN7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVN7_9PHAE) HSP 1 Score: 153 bits (386), Expect = 1.760e-38 Identity = 100/274 (36.50%), Postives = 151/274 (55.11%), Query Frame = 1
Query: 7 TWNVRTMSERGTNDPGH-AEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
T++VRT+ G N GH ++ ++ CD I +Q TRR G+ I ++ S G K G GVG+ ++E++ +G +G E I RL+KV TF+VGYAPT+T K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L A++ +L + +T+ TPK GG F K ++ LD+IL+RQ DRR VRN++V S+H LV ++RL
Sbjct: 159 TFSVRTLVYSGRNPIGHNVMKVMQISSATGCDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGEQGVGIAIKEAMWETVGEEGRKVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRITAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLASDNQLSLTNTYFRTPK-GGVQHTFQCSN-KGKEKYRLDFILMRQTDRRFVRNVSVKRVDFKDSDHNLVLTTVRL 426
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KBZ6_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBZ6_9PHAE) HSP 1 Score: 146 bits (369), Expect = 2.450e-38 Identity = 93/244 (38.11%), Postives = 136/244 (55.74%), Query Frame = 1
Query: 94 CDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIRL 801
CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G +G E I RL+KV TF+VGYAPT+T T K FW L + + EV + DHL+++MDANARTG R G DA+VLG YGRD +++NG ++ A++ + + +T+ TPK G + KE +R LD+IL+RQ DRR VRN++V S+H LV ++RL
Sbjct: 12 CDVIGLQETRREGQGSIAHDGY--VIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRR--GGCCDAKVLGAYGRDIMNNNGERLFGLASDNQFSLANTYFRTPKGGVQHTFQSSNKGKEKYR--LDFILMRQADRRFVRNVSVKRVDFKDSDHNLVLTTVRL 249
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Match: A0A6H5KC90_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC90_9PHAE) HSP 1 Score: 152 bits (384), Expect = 3.630e-38 Identity = 96/252 (38.10%), Postives = 142/252 (56.35%), Query Frame = 1
Query: 67 LLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHCSDHCDGDGGKSGILGVGMVVRESIARALGSDGIVPEHIRERLLKVSGIFKHRAATTFIVGYAPTKTAATCH------KSKFWKELRSTVAEVPASDHLILMMDANARTGGRGEGAGLGDARVLGPYGRDTVDDNGLQILACAAEYKLPIVSTFLSTPKRGGNSDAFTYEGPKESHRWCLDYILVRQHDRRLVRNITVHPK--MKSNHRLVSVSIR 798
++ A +CD I +Q TRR G+ I ++ S G K G+ GVG+ ++E++ ++G G E I RL+KV TF+VGYAPT+TA K FW L + + EV + DHL+++MDANARTG R +G DA+++G YGRD +++NG ++L AA+ +L +++T+ TPK G + KE HR LD+IL+RQ DRRLVRN +V S+H LV ++R
Sbjct: 3 VMQICAATDCDVIGLQETRRAGQGAITHDGY--VIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQIGRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC--DAKIMGAYGRDIMNNNGERLLGLAADNRLSLINTYFRTPKGGVQHTFQSSNKGKEKHR--LDFILMRQTDRRLVRNASVKRVDFKDSDHNLVHTTVR 248 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19627.5471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19627.5471.1 >prot_H-elongata_contig19627.5471.1 ID=prot_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=259bp MSERGTNDPGHAEDLLIFAAKYECDFIAIQGTRRNGRTIIQAPAASDIVHback to top mRNA from alignment at H-elongata_contig19627:2722..3522+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19627.5471.1 ID=mRNA_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=801bp|location=Sequence derived from alignment at H-elongata_contig19627:2722..3522+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19627:2722..3522+ >mRNA_H-elongata_contig19627.5471.1 ID=mRNA_H-elongata_contig19627.5471.1|Name=mRNA_H-elongata_contig19627.5471.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1554bp|location=Sequence derived from alignment at H-elongata_contig19627:2722..3522+ (Himanthalia elongata Himel1 dioecious)back to top |