mRNA_H-elongata_contig1962.5468.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1962.5468.1 vs. uniprot
Match: D7FW09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW09_ECTSI) HSP 1 Score: 693 bits (1789), Expect = 8.940e-230 Identity = 474/1145 (41.40%), Postives = 630/1145 (55.02%), Query Frame = 1
Query: 22 SAHLEYNLGLYQEAQRSIERALRLGHEDSGPMQIRLARIHMRKHKADTSNLKRDISGALAAFCAALSFTDIALRPVHYLEVASAYLKLNETQQAIKALATILIRWPVLLINTS--APSKFDSVDGDDHAEVDLPMARNILGNESIFLQMGLCYEIVGNVKVAKKAYLQAWNKLVERRKGELQ----GSLSAKAEDS-----------DYIEAILGHANAALRVVHPRGGAQTTGAPGSKDAASLPGD----SPYGSLERLRTPSPGYR--ENVIFFEKPGSRSVLASTRAGRSPNRGRIRSDREINNFTAAAEE----AKKKR--GFKLWLEEPYTWYRIGEALLSGKCFALALVFLDKTLDMLPPGLEQQEKGRFSDAHAEAEHARELDPLGERVKRLCPRLMALHSEDARSQAT-----TVCIQRAWRGHWKLHVLKDLVTRQIAAMRTQRFMRKWIRYNHWLILRRIAASATELSDAKGAHSRGLGVTATAFIAKRLQVMIEPAILVQRAVRVFLARQMARRRREAIVTLQAFQRGCQGRAALRAVLEEGCG---VLHMGRNTGSHSDDGKD--IVSGFRSVNQNLNHTSSENVSLKECTAPS------------------------------VGNLIRYSLPMDAGCPGGFGLPDLSAFLWDS-----------SGKEND----------DLDAAAAHSAAGGRISYTGTVPGGGVFELSVRALKSTR-----------------GDGSVSLERKQLPLAW----------------PDWVSPAIASEISLAQALDCSMLVINCPSFCSVCSRRLFSRIGRLKIEAAERQNPVPFSISRVAKGDIARDQEERHNTARIATPGKDPNGKRPRVLGEHLEC--------IMVLGYSPVGNAALLELSSALQHGSLSCLSTLVIGGPACRVGPRGINSLARALSSAGCLSLRHLSLSYCCLGRRLTRRVSLSSSPSLSLSSSLALKRVAATAAAHEAWGVFFRHLQYMSTLSTLSLQSCGLTDSDMSAVSIAIQTLPVCRLRCLRLNRNCVGAPGLRILLRALTSRRIRIPALWLRQQQPAMVESQVRETVNEAFAEGLWAEVEFERPMDAMGGRTRLLLMEHTSESEGLGRRAVKHTTSNIYL 3063
+AHL Y LGLY EA+ SIERAL LGHE+ G MQ+RLAR+H+R+ KAD++N +R + ALA++ A+ F +A VHYLEV S YLKLNETQ+A AL+T+L+RWP LL++ ++GD AEVDLP+A N+LG ESIFLQMG C+E + K+A +AY QAWN L+E+R G++ AK S D I AIL A AL +++T A G + S P S S R PS G + + + + G S L ST RG R D ++ +E A K R GF+LW + PYTW+ GE +L G C+AL L FL K + +LP GL QQEKGRF DAH+ AE AR+LDP G+ V+ LCPRLMALHS DAR Q T + +QRAWRGH + VL DLV++Q AA+R QRFMR+W ++ L LR +A SA ELS +++ +G+ A A A RLQ + A VQRA RV +A + RR+EAI LQAF RGC+ R AL A EE V H R D G++ + V + N + PS +G + R + PMDAGC GF P+L+AFLW+S G +++ + ++ ++ + R S+ G VFE S A+ S+ GD S P A+ P WV +A E + +AL CS L++N PSF S +RRLFSR+G+ I AA P + KG A R T G++ K R L +H C ++++G SP+G+ L ELSSA++ G L L+TLVIGGP C+VGPRG+ +LA ALS++GC L+HLS+S CCLGR+ SL + ++ A A AH AW FFRHLQ + +L+TLS+Q GL + D+ ++SIA+Q LP RLRCLRLN NCVG GLR+LL ALTSRR R+PALWLR+Q+PA+VES R+ AF +GL+AEVEFERP + MGGR+ L L+E T+E+E LGRRA+KH TS+IY+
Sbjct: 24 TAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSANAERHLRSALASYSEAMKFVRVASEAVHYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGD-RAEVDLPVASNVLGGESIFLQMGFCFETLRQDKMAAEAYRQAWNTLLEQRHASAAPAGYGAVFAKTAKSGGGKEVGVVGVDEIGAILRQAQLALAA-----SSRSTSAAGGRSRDSTPEQQLQRSKGTSSTERRPPSSGQQPDQQGVGGGRGGVPSSLPSTADSSCLGRGGGRGDHGDSSCGVTKKETVVDAAKARALGFELWCKNPYTWFSFGEVVLEGGCYALTLAFLAKAVALLPSGLHQQEKGRFGDAHSAAEEARDLDPFGKAVRLLCPRLMALHSVDARCQYTRESQSALRVQRAWRGHRVIRVLHDLVSKQTAALRIQRFMREWRKHGFILALRLVATSALELSKLGAKYTKAMGLAAQAAAADRLQALTASAEAVQRAARVLIAHRRVSRRKEAIAALQAFCRGCRLRWALSAAFEESLRLEYVAHDLRQQRDCGDGGREEGAYTCEEGVEPGPDREGVGNTDREGKRGPSAAPLRPRHGDGCKPHKEEAFAGYNAPLNVQLGVIARRNFPMDAGCAKGFRPPNLAAFLWESREEAYGSCCADDGTDDNPTLLVPHLGNETESPRSYVDSAARSSHGDD---GAVFEASATAVASSACREDPVRMGSEQNEVDLGDCSPDQHGGGRPPAFDELPASPVSPLPLLQPPRWVPATVAPEGAFHRALACSTLIVNSPSFDSSSARRLFSRMGK-PIPAASPPRDEPQQEADDVKGMAA--GVRRGKADLNPTHGEE---KEKRRLKKHPGCLHANGLKHVLLVGESPIGDGGLSELSSAVRCGWLPRLTTLVIGGPGCKVGPRGVAALATALSTSGCSQLQHLSMSNCCLGRQKQXXXXXXXGCKTSLLNPASVSAEKAAAEAHAAWDCFFRHLQRLPSLATLSIQDAGLENRDVRSLSIALQILPADRLRCLRLNGNCVGESGLRMLLTALTSRRRRLPALWLRRQRPALVESGARDIFEGAFRDGLFAEVEFERPFEVMGGRSHLALIECTTETEDLGRRALKHPTSHIYI 1153
BLAST of mRNA_H-elongata_contig1962.5468.1 vs. uniprot
Match: A0A6H5JP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP04_9PHAE) HSP 1 Score: 634 bits (1635), Expect = 3.570e-206 Identity = 458/1209 (37.88%), Postives = 618/1209 (51.12%), Query Frame = 1
Query: 22 SAHLEYNLGLYQEAQRSIERALRLGHEDSGPMQIRLARIHMRKHKADTSNLKRDISGALAAFCAALSFTDIALRPVHYLEVASAYLKLNETQQAIKALATILIRWPVLLINTS--APSKFDSVDGDDHAEVDLPMARNILGNESIFLQ--------------------------------MGLCYEIVGNVKVAKKAYLQAWNKLVERRKGELQGSLSAKAEDSDYIEAILGHANAALRVVHPRGGAQTTGAPGSKDAASLPGDSPYGSLERLRTPSPGYRENVIFFEKPGSRSVLASTRAGRSPNRGRIRSDREINNFTAAAEEAKKKRGFKLWLEEPYTWYRIGEALLSGKCFALALVFLDKTLDMLPPGLEQQEKGRFSDAHAEAEHARELDPLGERVKRLCPRLMALHSEDARSQA-------TTVCIQRAWRGHWKLHVLKDLVTRQIAAMRTQRFMRKWIRYNHWLILRRIAASATELS---------------------DAKGA-------------HSRGLGVTATAFIAKRLQVMIEPAILVQRAVRVFLARQMARRRREAIVTLQAFQRGCQGRAALRAVLEEGCGVLHM-------------GRNTGSHSD--------DGKDIVSGFRSVNQNLNHTSSENVSLKEC----------TAP---SVGNLIRYSLPMDAGCPGGFGLPDLSAFLWDSS------------------------GKENDD----LDAAAAHSAAGGR-----ISYTGTVP----------GGGVFELSVRALKSTRGDGSVSLERKQLP---------LAWPDWVSPAIASEISLAQALDCSMLVINCPSFCSVCSRRLFSRIGRL-------KIEAAERQNPVPFSISRVAKGDIARDQEERHNTARIATPGKDPNGKRPRVLGEHLECIMVLGYSPVGNAALLELSSALQHGSLSCLSTLVIGGPACRVGPRGINSLARALSSAGCLSLRHLSLSYCCLGRRLTRRVSLSSSPSLSLSSSLALKRVAATAAAHEAWGVFFRHLQYMSTLSTLSLQSCGLTDSDMSAVSIAIQTLPVCRLRCLRLNRNCVGAPGLRILLRALTSRRIRIPALWLRQQQPAMVESQVRETVNEAFAEGLWAEV---------------------------EFERPMDAMGGRTRLLLMEHTSESEGLGRRAVKHTTSNIYL 3063
+AHL Y LGLY EA+ SIERAL LGHE+ G MQ+RLAR+H+R+ KAD+++ +R + ALA++ A+ F +A +HYLEV S YLKLNETQ+A AL+T+L+RWP LL++T ++GD AEVDLP+A +LG ESIFLQ MGLC+E + K+A +AY QAWN L+E+R +A A G + R + A+T + G K+ + D G++ R + + S S +P + RS N T + GF+LW + PYTW+ GE +L G C+AL L FL K + +LP GL QQEKGRF DAH+ AE AR+LDP G+ V+ LCPRLMALHS DAR QA + + +QRAWRGH + VL+DLV++QIAA R QRFMR+W ++ L LR A SA EL D + +++ +G+TA A A RLQ + A VQRA R +A + RR+EAI LQAF RGC+ R AL A EE + + GR G+H+ D + + + R + L+ TS C AP +G + R +LPMD C GF P+L+AFLW+S GKE + +DAA A S+ G S T G E+ + S + G +LP L P WV +A E + +AL CS L+++ PSF S +RRLFSR+G+ + E + + V + V +G + + R+ K P G + LE I++LG SP+G+ L ELSSA++ G L L+TLVIGGP C+VGPRG+ +LA ALS++GC L+HLS+S CCLGR RR S+ ++ A A AH AW FFRHLQ + +L+TLS+Q GL + D+ ++SIA+Q LP RLRCLRLN NCVG GLR+LL AL SRR R+PALWLR+Q+PA+VES RE AF +GL+AEV EFERP + MGGR+ L L+E T+E+E LGRRA+KH TS+IY+
Sbjct: 24 TAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSASAERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVLLRWPALLVDTENDGHGSVPVIEGD-RAEVDLPVASYVLGGESIFLQARLTKLASRTRYSLFESEPHRYRIRRSVTPNAMGLCFETLRQDKMAAEAYRQAWNTLLEQRHAS-----AAPAGQKPXXXXXTGDPSK-TRTGYGAVFAKTAKSGGGKEVGVVRVDE-IGAILR--------QAQLALAASSRSTSAAGGRSRDSTPEQQLQRSGGVTKNKTIVDAAKARALGFELWCKNPYTWFNYGEVVLEGGCYALTLAFLAKAVALLPSGLLQQEKGRFGDAHSAAEEARDLDPFGKAVRLLCPRLMALHSVDARCQARYTRESQSALRVQRAWRGHRVIRVLRDLVSKQIAAFRIQRFMREWRKHGFILALRLAAISALELRQVVRRRRSRSWVWHERRAAWVDGEATLARIHAPPKLGTNYTKAMGLTAQAAAADRLQALAASAEAVQRAARALIAHRRVSRRKEAIAALQAFFRGCRLRWALSAAFEESLRIESVARDLRQQRDCGDGGREEGAHTCEEGVKPGLDPEGVGNTDREGKRGLSATSLRPRHGDGCKPHKDTFGGYNAPPNVQLGVITRRNLPMDVSCAKGFRPPNLAAFLWESREDAYGSRCADDGADDNTALLAPHLGKEKESPRSYVDAAVARSSHGHDHAVFVASATAVASSACREDLARMGSEQNEVDLGDCLSDQHGGGRPPAFDELPASPVSALPLLQPPRWVPATVAPEGAFHRALACSTLIVSSPSFDSASARRLFSRMGKPMPAASPPRDEPQQETDDVKGMAAGVRRGQVDLNLTHGEEKERLI---KHPTGC---LYANGLEHILLLGESPIGDGGLSELSSAVRCGWLPRLTTLVIGGPGCKVGPRGVAALATALSTSGCSQLQHLSMSNCCLGRPKGRRXXXXXXXXXXXSNLASVSAEKAAAEAHAAWDCFFRHLQRLPSLATLSIQDAGLENRDVRSLSIALQILPADRLRCLRLNGNCVGESGLRMLLTALRSRRRRLPALWLRRQRPALVESGAREIFERAFRDGLFAEVKRVPHPMNIERIEGKFRAANRNTWWLVEFERPFEVMGGRSHLALIERTTETEDLGRRALKHPTSHIYI 1210 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1962.5468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1962.5468.1 >prot_H-elongata_contig1962.5468.1 ID=prot_H-elongata_contig1962.5468.1|Name=mRNA_H-elongata_contig1962.5468.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=1024bp MLLWVLSSAHLEYNLGLYQEAQRSIERALRLGHEDSGPMQIRLARIHMRKback to top mRNA from alignment at H-elongata_contig1962:4049..10907+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1962.5468.1 ID=mRNA_H-elongata_contig1962.5468.1|Name=mRNA_H-elongata_contig1962.5468.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6859bp|location=Sequence derived from alignment at H-elongata_contig1962:4049..10907+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1962:4049..10907+ >mRNA_H-elongata_contig1962.5468.1 ID=mRNA_H-elongata_contig1962.5468.1|Name=mRNA_H-elongata_contig1962.5468.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=6144bp|location=Sequence derived from alignment at H-elongata_contig1962:4049..10907+ (Himanthalia elongata Himel1 dioecious)back to top |