mRNA_H-elongata_contig196049.5463.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig196049.5463.1
Unique NamemRNA_H-elongata_contig196049.5463.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: D8LQW4_ECTSI (Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQW4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 1.260e-30
Identity = 49/55 (89.09%), Postives = 53/55 (96.36%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQAR 165
            GCQVVKTYCGHGIGELFHT+PTVPHYP+NKA GVMKPGH+FTIEPMIN+GTWQ R
Sbjct:  282 GCQVVKTYCGHGIGELFHTVPTVPHYPKNKAKGVMKPGHIFTIEPMINVGTWQDR 336
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A4D9CTD9_9STRA (Peptidase_M24 domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CTD9_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.260e-28
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            GC VVKTYCGHGIGELFHT P VPHY +NKA GV+KPGH+FTIEPMIN+G+WQ
Sbjct:    6 GCSVVKTYCGHGIGELFHTNPNVPHYAKNKAKGVVKPGHIFTIEPMINLGSWQ 58
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A835ZL51_9STRA (Methionine aminopeptidase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZL51_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.260e-26
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:    4 CQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQAR 165
            CQVV+TYCGHGIG LFHT+P +PHYP+NKA G+MKPGH+FTIEPMIN+G WQ R
Sbjct:  271 CQVVRTYCGHGIGALFHTVPNIPHYPKNKAKGIMKPGHIFTIEPMINLGVWQDR 324
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A6S8TIR6_9STRA (Methionine aminopeptidase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A6S8TIR6_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.640e-26
Identity = 45/55 (81.82%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQAR 165
            GCQVVKTYCGHGIGELFHT P VPHY +NKAVGVMK GH+FTIEPMIN+G W+ R
Sbjct:  305 GCQVVKTYCGHGIGELFHTAPNVPHYSKNKAVGVMKAGHIFTIEPMINLGGWRDR 359
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A397FHP3_9STRA (Methionine aminopeptidase (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FHP3_9STRA)

HSP 1 Score: 102 bits (254), Expect = 7.340e-26
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            G  VVKTYCGHGIG LFHT P VPHY +NKAVG+MKPGHVFTIEPMIN+G+W+
Sbjct:  103 GMSVVKTYCGHGIGRLFHTTPNVPHYAKNKAVGIMKPGHVFTIEPMINMGSWR 155
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A7M5WXJ1_9CNID (Methionine aminopeptidase n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5WXJ1_9CNID)

HSP 1 Score: 103 bits (258), Expect = 8.640e-26
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            GC V +TYCGHGI  LFHT P VPHY +NKAVG+MKPGHVFTIEPMIN+GTWQ
Sbjct:  177 GCSVTRTYCGHGIHRLFHTAPNVPHYAKNKAVGIMKPGHVFTIEPMINLGTWQ 229
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A7S2FIG7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FIG7_9STRA)

HSP 1 Score: 100 bits (248), Expect = 1.610e-25
Identity = 39/52 (75.00%), Postives = 48/52 (92.31%), Query Frame = 1 
Query:    4 CQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            C VV+TYCGHGIGELFHT+P VPHY +NKA GVM+PGH+FT+EPMIN+GT++
Sbjct:   48 CSVVRTYCGHGIGELFHTVPNVPHYAKNKAKGVMQPGHIFTVEPMINVGTYR 99
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BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A7S4I5D6_9EUKA (Methionine aminopeptidase n=2 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4I5D6_9EUKA)

HSP 1 Score: 103 bits (258), Expect = 2.480e-25
Identity = 43/53 (81.13%), Postives = 48/53 (90.57%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            G QVVK+YCGHGIG LFHT P VPHY RNKAVG+MKPGH+FTIEPMIN+GTW+
Sbjct:  255 GFQVVKSYCGHGIGRLFHTTPNVPHYSRNKAVGMMKPGHIFTIEPMINMGTWR 307
[Close]
BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A7M6DLT8_9CNID (Methionine aminopeptidase n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DLT8_9CNID)

HSP 1 Score: 103 bits (258), Expect = 4.510e-25
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            GC V +TYCGHGI  LFHT P VPHY +NKAVG+MKPGHVFTIEPMIN+GTWQ
Sbjct:  291 GCSVTRTYCGHGIHRLFHTAPNVPHYAKNKAVGIMKPGHVFTIEPMINLGTWQ 343
[Close]
BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Match: A0A485L8N0_9STRA (Methionine aminopeptidase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8N0_9STRA)

HSP 1 Score: 105 bits (261), Expect = 4.990e-25
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1 
Query:    1 GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIGTWQ 159
            G  VVK+YCGHGIG LFHTLPTVPHY +NKAVG+MKPGH+F+IEPMINIGTW+
Sbjct:  268 GFSVVKSYCGHGIGSLFHTLPTVPHYAKNKAVGIMKPGHIFSIEPMINIGTWR 320
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig196049.5463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW4_ECTSI1.260e-3089.09Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID... [more]
A0A4D9CTD9_9STRA3.260e-2881.13Peptidase_M24 domain-containing protein (Fragment)... [more]
A0A835ZL51_9STRA1.260e-2677.78Methionine aminopeptidase n=1 Tax=Tribonema minus ... [more]
A0A6S8TIR6_9STRA2.640e-2681.82Methionine aminopeptidase n=1 Tax=Pelagomonas calc... [more]
A0A397FHP3_9STRA7.340e-2679.25Methionine aminopeptidase (Fragment) n=1 Tax=Aphan... [more]
A0A7M5WXJ1_9CNID8.640e-2679.25Methionine aminopeptidase n=2 Tax=Clytia hemisphae... [more]
A0A7S2FIG7_9STRA1.610e-2575.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S4I5D6_9EUKA2.480e-2581.13Methionine aminopeptidase n=2 Tax=Vannella sp. CB-... [more]
A0A7M6DLT8_9CNID4.510e-2579.25Methionine aminopeptidase n=1 Tax=Clytia hemisphae... [more]
A0A485L8N0_9STRA4.990e-2581.13Methionine aminopeptidase n=1 Tax=Aphanomyces stel... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig196049contigH-elongata_contig196049:721..885 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue3.1e-25
Seed eggNOG ortholog2880.D8LQW4
Preferred nameMETAP1
KEGG koko:K01265
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016787,GO:0018193,GO:0018206,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031323,GO:0031326,GO:0031365,GO:0032101,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2738@2759
EC3.4.11.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionPeptidase M24, structural domain
Ec32 orthologEc-07_001830.1
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930112.0148263-CDS-H-elongata_contig196049:720..8851622930112.0148263-CDS-H-elongata_contig196049:720..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196049 721..885 +
1691679285.0807807-CDS-H-elongata_contig196049:720..8851691679285.0807807-CDS-H-elongata_contig196049:720..885Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig196049 721..885 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig196049.5463.1prot_H-elongata_contig196049.5463.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig196049 721..885 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig196049.5463.1

>prot_H-elongata_contig196049.5463.1 ID=prot_H-elongata_contig196049.5463.1|Name=mRNA_H-elongata_contig196049.5463.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=55bp
GCQVVKTYCGHGIGELFHTLPTVPHYPRNKAVGVMKPGHVFTIEPMINIG
TWQAR
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mRNA from alignment at H-elongata_contig196049:721..885+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig196049.5463.1 ID=mRNA_H-elongata_contig196049.5463.1|Name=mRNA_H-elongata_contig196049.5463.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=165bp|location=Sequence derived from alignment at H-elongata_contig196049:721..885+ (Himanthalia elongata Himel1 dioecious)
GGCTGCCAGGTGGTGAAAACCTACTGTGGGCACGGCATCGGCGAGTTGTT
CCACACGCTGCCCACCGTGCCGCACTATCCAAGGAATAAGGCCGTGGGGG
TCATGAAGCCGGGTCACGTCTTCACCATCGAGCCCATGATAAACATTGGC
ACCTGGCAGGCAAGA
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Coding sequence (CDS) from alignment at H-elongata_contig196049:721..885+

>mRNA_H-elongata_contig196049.5463.1 ID=mRNA_H-elongata_contig196049.5463.1|Name=mRNA_H-elongata_contig196049.5463.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=330bp|location=Sequence derived from alignment at H-elongata_contig196049:721..885+ (Himanthalia elongata Himel1 dioecious)
GGCTGCCAGGTGGTGAAAACCTACTGTGGGCACGGCATCGGCGAGTTGTT
CCACACGCTGCCCACCGTGCCGCACTATCCAAGGAATAAGGCCGTGGGGG
TCATGAAGCCGGGTCACGTCTTCACCATCGAGCCCATGATAAACATTGGC
ACCTGGCAGGCAAGAGGCTGCCAGGTGGTGAAAACCTACTGTGGGCACGG
CATCGGCGAGTTGTTCCACACGCTGCCCACCGTGCCGCACTATCCAAGGA
ATAAGGCCGTGGGGGTCATGAAGCCGGGTCACGTCTTCACCATCGAGCCC
ATGATAAACATTGGCACCTGGCAGGCAAGA
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