mRNA_H-elongata_contig19595.5461.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19595.5461.1
Unique NamemRNA_H-elongata_contig19595.5461.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JUE2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE2_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 8.100e-31
Identity = 56/137 (40.88%), Postives = 86/137 (62.77%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSL 411
            WEA M++++  +D TG F  +   PEG   +  KW FSWK NE G ++ +KAR+VAR FS+   +DF    ++ PS +S+K +  VA E G++  HWDVKQ+++  K   + +++ P G  + SGKVVK+ R +Y L
Sbjct:   31 WEAAMKKDIDGHDKTGTFPKVKELPEGRKAIGSKWVFSWKTNEKGLIVDSKARMVARGFSRIPGIDFHHSSSACPSAASIKTVIAVATEKGKKLAHWDVKQAYIHAKLTEEIYLRFPEGCGSMSGKVVKVERALYGL 167          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JVQ8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVQ8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.080e-28
Identity = 61/138 (44.20%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
            WE  M+EE   +  TG F+ +   PEG   V  KW F+WK N+ G+++K KARLVAR FSQ+  VD+    +  PS +S+K++  VANE   +  HWDVKQ+F   K D D F++LP+G   +S  V K  R +Y LK
Sbjct:  543 WEQAMREEFDGHLGTGTFSFVDGTPEGRRPVSSKWRFTWKTNKDGKIVKFKARLVARGFSQTPNVDYFHSSSPCPSSASIKLMLAVANEKSLKLNHWDVKQAFTHAKLDEDVFLRLPAGCGEKSHTVAKAERAIYGLK 680          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A0K8TZB9_BACLA (Copia protein n=3 Tax=Bactrocera latifrons TaxID=174628 RepID=A0A0K8TZB9_BACLA)

HSP 1 Score: 102 bits (253), Expect = 1.870e-22
Identity = 47/137 (34.31%), Postives = 79/137 (57.66%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
            WE  +Q+EL+S+     ++ +  P+  N+V  KW F+ K +E G +++ KARLVAR F+Q Y  D+DE F      SS +++  ++N+YG +  H DVK +F+      + ++++P G       V KL + +Y LK
Sbjct:  858 WEKAIQDELQSHSENNTWSLVAKPDKKNIVDCKWVFTIKQDECGNLVRYKARLVARGFTQEYLTDYDETFAPVARISSFRLMLALSNQYGLKMHHMDVKTAFLNGVLKEEIYMRVPEGLVHNDNTVCKLNKAIYGLK 994          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A034VP82_BACDO (Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27457 RepID=A0A034VP82_BACDO)

HSP 1 Score: 101 bits (251), Expect = 3.480e-22
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 1
Query:    1 LWEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSG-GAAESGKVVKLTRTMYSLK 414
            LWE  +Q+EL S+ V   +  +  P   N+V  KW FS K +E G +LK KARLVAR F+Q Y +D+DE F      SS + +   +N+Y     H DVK +F+      + ++K+P G    +  KV KL + +Y LK
Sbjct:  869 LWEEAIQDELNSHFVNNTWCLVQRPMDKNIVDCKWVFSLKQDENGNLLKYKARLVARGFTQEYMMDYDETFAPVARISSFRFLLAFSNQYNLLIHHMDVKTAFLYGTLKDEIYMKVPKGLNQYDGNKVCKLNKAIYGLK 1007          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A182G9G9_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G9G9_AEDAL)

HSP 1 Score: 94.7 bits (234), Expect = 5.260e-20
Identity = 45/137 (32.85%), Postives = 77/137 (56.20%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
            W+  M+EE+ S +    +  +  P G   +  +W+F  K NEIGQ ++ KARLVA+ FSQ +  DFDE+F       +++ +  +A+  G    H D+K +++  +   D ++K P G + ++G V  L R++Y LK
Sbjct:    9 WQVAMEEEIASLNEHRTWELVPLPPGKKAIGCRWTFKKKENEIGQTVRYKARLVAQGFSQQFGSDFDEVFAPVVRQPTLRTMLTIASREGMLVKHLDIKTAYLYAELKEDIYMKQPPGFSEDNGLVCHLRRSIYGLK 145          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A438IM12_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438IM12_VITVI)

HSP 1 Score: 94.7 bits (234), Expect = 6.410e-20
Identity = 48/139 (34.53%), Postives = 79/139 (56.83%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAA--ESGKVVKLTRTMYSLK 414
            W+  +QEE+++ +  G +     PEG   V  KW F+ K+N  G + + KA+LVA+ F+QSY +D++EIF      +S+KV+  VA          DVK +F+  + + + ++K+P        SGKV KL +++Y LK
Sbjct:  297 WKTVVQEEIQALEKNGTWEISELPEGKRPVGCKWIFTMKHNPDGSINRFKAQLVAKGFTQSYGIDYEEIFAPVAKLNSIKVLLSVAVNLDWNLHQLDVKNAFLNGELEEEVYMKIPPSMETPENSGKVCKLRKSLYGLK 435          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5JAQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAQ2_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 6.760e-20
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLN-PEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
            WEA M+ E+  +D TG FT +   PEG   +                + +KAR+VAR FSQ   +DF     + PS +S+K +  VA E G++  HWDVKQ+++  K   +  ++ P G  +  GKVVK+ R +Y LK
Sbjct:  936 WEAAMKTEIDGHDKTGTFTKVKELPEGRKAI----------------VDSKARMVARGFSQIPGIDFHHSSAACPSAASIKTVIAVATEKGKKLAHWDVKQAYIYAKLKGEICLRFPEGCGSMYGKVVKVERALYGLK 1057          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A182G7X1_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182G7X1_AEDAL)

HSP 1 Score: 93.6 bits (231), Expect = 1.670e-19
Identity = 47/139 (33.81%), Postives = 78/139 (56.12%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAA--ESGKVVKLTRTMYSLK 414
            W + M +E  S+ V G +  +  P G  +V  +W F  K NE+G+V + KAR+VA+ +SQ Y VDFDE+F      ++++ +  +A   G    H DVK +++    D + +++ P G A   +  KV +L R++Y LK
Sbjct:  477 WRSAMDDEYHSHMVNGTWDLVDLPAGKKIVGSRWVFKAKQNEVGEVTRFKARIVAQGYSQRYGVDFDEVFAPVTRHATLRTLLALAGRDGLLLRHMDVKTAYLYGDIDEEVYMRQPPGYAVRGQEEKVCRLRRSIYGLK 615          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A2K3MYT4_TRIPR (Retrotransposon-related protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3MYT4_TRIPR)

HSP 1 Score: 90.9 bits (224), Expect = 1.500e-18
Identity = 45/139 (32.37%), Postives = 72/139 (51.80%), Query Frame = 1
Query:    4 WEATMQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAES--GKVVKLTRTMYSLK 414
            W A MQEEL S +    +  +  P     + +KW F  K N  G+++K KARLVAR F Q   +D+ E++       +++++  +A+ Y     H DVK +F+    + + ++  P G   ES   KV KL + +Y LK
Sbjct:  831 WNAAMQEELHSIEKNNTWKLVELPPQKKAISVKWVFKLKRNPDGEIVKHKARLVARGFLQQEGIDYTEVYAPVARMETIRLVIAIASSYNLSLYHMDVKSAFLNGPLEEEVYVMQPPGFELESEKNKVYKLDKALYGLK 969          
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Match: A0A6H5KEU9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEU9_9PHAE)

HSP 1 Score: 89.0 bits (219), Expect = 2.290e-18
Identity = 44/110 (40.00%), Postives = 68/110 (61.82%), Query Frame = 1
Query:   85 NVVWIKWSFSWKNNEIGQVLKTKARLVARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVRTKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK 414
            N +  K  F WK +  G   K KARLVAR   Q   +DF +++  + + SSV+++A +A E   +  H+D+ Q+FVR  F  DTF++LP G  A SGK+V+L +++Y L+
Sbjct:  145 NCIKSKLIFDWKVDAFGFPTKAKARLVARGDMQKEYIDFGDLYAPNVASSSVRMLAALACELDLELCHFDIDQAFVRAPFKEDTFMRLPEGCGALSGKIVQLNKSLYGLR 254          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19595.5461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUE2_9PHAE8.100e-3140.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JVQ8_9PHAE1.080e-2844.20Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0K8TZB9_BACLA1.870e-2234.31Copia protein n=3 Tax=Bactrocera latifrons TaxID=1... [more]
A0A034VP82_BACDO3.480e-2238.13Copia protein n=1 Tax=Bactrocera dorsalis TaxID=27... [more]
A0A182G9G9_AEDAL5.260e-2032.85Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438IM12_VITVI6.410e-2034.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5JAQ2_9PHAE6.760e-2036.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A182G7X1_AEDAL1.670e-1933.81Integrase catalytic domain-containing protein n=1 ... [more]
A0A2K3MYT4_TRIPR1.500e-1832.37Retrotransposon-related protein (Fragment) n=1 Tax... [more]
A0A6H5KEU9_9PHAE2.290e-1840.00Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19595contigH-elongata_contig19595:6026..6442 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.1
Seed ortholog evalue8.4e-16
Seed eggNOG ortholog4538.ORGLA12G0123700.1
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37THH@33090,3GG2K@35493,3IKX9@38820,3M2IR@4447,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPoales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size417
Cds size402
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.8452213-UTR-H-elongata_contig19595:6025..60401622930111.8452213-UTR-H-elongata_contig19595:6025..6040Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19595 6026..6040 +
1691679285.010351-UTR-H-elongata_contig19595:6025..60401691679285.010351-UTR-H-elongata_contig19595:6025..6040Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19595 6026..6040 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.860259-CDS-H-elongata_contig19595:6040..64421622930111.860259-CDS-H-elongata_contig19595:6040..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19595 6041..6442 +
1691679285.0204794-CDS-H-elongata_contig19595:6040..64421691679285.0204794-CDS-H-elongata_contig19595:6040..6442Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19595 6041..6442 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19595.5461.1prot_H-elongata_contig19595.5461.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19595 6041..6442 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19595.5461.1

>prot_H-elongata_contig19595.5461.1 ID=prot_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
MQEELKSYDVTGNFTPMLNPEGSNVVWIKWSFSWKNNEIGQVLKTKARLV
ARRFSQSYKVDFDEIFTSSPSCSSVKVIAGVANEYGRQTPHWDVKQSFVR
TKFDYDTFIKLPSGGAAESGKVVKLTRTMYSLK*
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mRNA from alignment at H-elongata_contig19595:6026..6442+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19595.5461.1 ID=mRNA_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=417bp|location=Sequence derived from alignment at H-elongata_contig19595:6026..6442+ (Himanthalia elongata Himel1 dioecious)
CTTTGGGAGGCCACAATGCAGGAAGAGTTGAAGAGTTACGATGTAACGGG GAATTTCACACCCATGTTAAACCCCGAAGGGTCGAACGTCGTATGGATCA AGTGGAGTTTTAGTTGGAAAAACAATGAAATCGGGCAAGTGCTTAAGACC AAGGCGAGGCTTGTTGCCCGCAGATTTAGTCAATCGTATAAAGTTGACTT CGATGAGATATTCACCTCGAGTCCCTCTTGTTCATCGGTTAAGGTAATAG CGGGTGTAGCTAACGAGTATGGCCGTCAGACGCCACACTGGGACGTGAAG CAGTCGTTTGTGAGAACAAAGTTCGACTATGATACTTTTATTAAGCTTCC CTCTGGTGGTGCCGCTGAGAGTGGTAAGGTCGTCAAGCTAACTCGAACTA TGTATAGCTTGAAATAA
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Coding sequence (CDS) from alignment at H-elongata_contig19595:6026..6442+

>mRNA_H-elongata_contig19595.5461.1 ID=mRNA_H-elongata_contig19595.5461.1|Name=mRNA_H-elongata_contig19595.5461.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig19595:6026..6442+ (Himanthalia elongata Himel1 dioecious)
ATGCAGGAAGAGTTGAAGAGTTACGATGTAACGGGGAATTTCACACCCAT
GTTAAACCCCGAAGGGTCGAACGTCGTATGGATCAAGTGGAGTTTTAGTT
GGAAAAACAATGAAATCGGGCAAGTGCTTAAGACCAAGGCGAGGCTTGTT
GCCCGCAGATTTAGTCAATCGTATAAAGTTGACTTCGATGAGATATTCAC
CTCGAGTCCCTCTTGTTCATCGGTTAAGGTAATAGCGGGTGTAGCTAACG
AGTATGGCCGTCAGACGCCACACTGGGACGTGAAGCAGTCGTTTGTGAGA
ACAAAGTTCGACTATGATACTTTTATTAAGCTTCCCTCTGGTGGTGCCGC
TGAGAGTGGTAAGGTCGTCAAGCTAACTCGAACTATGTATAGCTTGAAAT
AAATGCAGGAAGAGTTGAAGAGTTACGATGTAACGGGGAATTTCACACCC
ATGTTAAACCCCGAAGGGTCGAACGTCGTATGGATCAAGTGGAGTTTTAG
TTGGAAAAACAATGAAATCGGGCAAGTGCTTAAGACCAAGGCGAGGCTTG
TTGCCCGCAGATTTAGTCAATCGTATAAAGTTGACTTCGATGAGATATTC
ACCTCGAGTCCCTCTTGTTCATCGGTTAAGGTAATAGCGGGTGTAGCTAA
CGAGTATGGCCGTCAGACGCCACACTGGGACGTGAAGCAGTCGTTTGTGA
GAACAAAGTTCGACTATGATACTTTTATTAAGCTTCCCTCTGGTGGTGCC
GCTGAGAGTGGTAAGGTCGTCAAGCTAACTCGAACTATGTATAGCTTGAA
ATAA
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