mRNA_H-elongata_contig195821.5457.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195821.5457.1
Unique NamemRNA_H-elongata_contig195821.5457.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195821.5457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195821contigH-elongata_contig195821:287..498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size184
Cds size183
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.5775652-CDS-H-elongata_contig195821:287..3641622930111.5775652-CDS-H-elongata_contig195821:287..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 288..364 -
1691679284.92416-CDS-H-elongata_contig195821:287..3641691679284.92416-CDS-H-elongata_contig195821:287..364Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 288..364 -
1622930111.592875-CDS-H-elongata_contig195821:392..4981622930111.592875-CDS-H-elongata_contig195821:392..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 393..498 -
1691679284.931644-CDS-H-elongata_contig195821:392..4981691679284.931644-CDS-H-elongata_contig195821:392..498Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195821 393..498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195821.5457.1prot_H-elongata_contig195821.5457.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195821 288..498 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195821.5457.1

>prot_H-elongata_contig195821.5457.1 ID=prot_H-elongata_contig195821.5457.1|Name=mRNA_H-elongata_contig195821.5457.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=61bp
FVPHRVSYRRRGHRGEKGGIGRIGIGIDGGLRIGIAESAVRSASPETMGP
KGGPTSFPVDD
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mRNA from alignment at H-elongata_contig195821:287..498-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195821.5457.1 ID=mRNA_H-elongata_contig195821.5457.1|Name=mRNA_H-elongata_contig195821.5457.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=212bp|location=Sequence derived from alignment at H-elongata_contig195821:287..498- (Himanthalia elongata Himel1 dioecious)
TTCGTGCCCCACAGAGTCTCGTATCGCCGCCGCGGCCATCGCGGCGAGAA
AGGTGGCATTGGCAGGATCGGTATCGGAATTGATGGCGGACTTAGAATCG
GAATCGGCTGCGGAATCGGCAGCGGTGGCAGTAGCGGAATCGGCAGTAAG
GTCAGCTTCACCGGAGACGATGGGGCCGAAGGGGGGTCCTACCAGCTTTC
CTGTTGACGATG
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Coding sequence (CDS) from alignment at H-elongata_contig195821:287..498-

>mRNA_H-elongata_contig195821.5457.1 ID=mRNA_H-elongata_contig195821.5457.1|Name=mRNA_H-elongata_contig195821.5457.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=366bp|location=Sequence derived from alignment at H-elongata_contig195821:287..498- (Himanthalia elongata Himel1 dioecious)
TTCGTGCCCCACAGAGTCTCGTATCGCCGCCGCGGCCATCGCGGCGAGAA
AGGTGGCATTGGCAGGATCGGTATCGGAATTGATGGCGGACTTAGAATCG
GAATCGTTCGTGCCCCACAGAGTCTCGTATCGCCGCCGCGGCCATCGCGG
CGAGAAAGGTGGCATTGGCAGGATCGGTATCGGAATTGATGGCGGACTTA
GAATCGGAATCGCGGAATCGGCAGTAAGGTCAGCTTCACCGGAGACGATG
GGGCCGAAGGGGGGTCCTACCAGCTTTCCTGTTGACGATCGGAATCGGCA
GTAAGGTCAGCTTCACCGGAGACGATGGGGCCGAAGGGGGGTCCTACCAG
CTTTCCTGTTGACGAT
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