mRNA_H-elongata_contig195777.5456.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195777.5456.1
Unique NamemRNA_H-elongata_contig195777.5456.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A397BI30_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BI30_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 9.010e-10
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLD 105
            ELAI T+R AIQLEPNFPDAYNNLGNALR+  QL+
Sbjct:  281 ELAIATYRTAIQLEPNFPDAYNNLGNALRDIRQLE 315
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A397CTS5_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CTS5_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.020e-9
Identity = 28/35 (80.00%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLD 105
            ELAI T+R AIQLEPNFPDAYNNLGNALR+  QL+
Sbjct:  634 ELAIATYRTAIQLEPNFPDAYNNLGNALRDIRQLE 668
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A813C116_9DINO (Ogt protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C116_9DINO)

HSP 1 Score: 55.1 bits (131), Expect = 1.560e-8
Identity = 24/30 (80.00%), Postives = 27/30 (90.00%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALRE 90
            E AIR +++AIQLEPNFPDAYNNLGNA RE
Sbjct:    2 ETAIRLYKHAIQLEPNFPDAYNNLGNAYRE 31
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A1W0A6E6_9STRA (Protein O-GlcNAc transferase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6E6_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.690e-8
Identity = 26/30 (86.67%), Postives = 28/30 (93.33%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALRE 90
            ELAI T+R AIQLEPN+PDAYNNLGNALRE
Sbjct:  346 ELAITTYRTAIQLEPNYPDAYNNLGNALRE 375
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A7R8ZT13_9CRUS (Hypothetical protein n=1 Tax=Cyprideis torosa TaxID=163714 RepID=A0A7R8ZT13_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 5.940e-8
Identity = 24/35 (68.57%), Postives = 30/35 (85.71%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLD 105
            +LAI T+R AI+L+PNFPDAY NL NAL+E GQ+D
Sbjct:   19 DLAIETYRRAIELQPNFPDAYCNLANALKEKGQID 53
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: UPI00193DB5C1 (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like n=1 Tax=Nilaparvata lugens TaxID=108931 RepID=UPI00193DB5C1)

HSP 1 Score: 52.8 bits (125), Expect = 9.300e-8
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDVGHD 117
            +LAI T+R AI+L+PNFPDAY NL NAL+E GQ+    +
Sbjct:    7 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVSEAEE 45
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A1B0C9V7_LUTLO (Uncharacterized protein n=1 Tax=Lutzomyia longipalpis TaxID=7200 RepID=A0A1B0C9V7_LUTLO)

HSP 1 Score: 53.1 bits (126), Expect = 9.510e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDV 108
            +LAI T+R AI+L+PNFPDAY NL NAL+E G++ V
Sbjct:   77 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGEVSV 112
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: A0A8J5TJ15_HOMAM (UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit-like 1 n=3 Tax=Decapoda TaxID=6683 RepID=A0A8J5TJ15_HOMAM)

HSP 1 Score: 53.1 bits (126), Expect = 5.300e-7
Identity = 23/39 (58.97%), Postives = 31/39 (79.49%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDVGHD 117
            +LAI T+R AI+L+PNFPDAY NL NAL+E GQ++   +
Sbjct:   17 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVNEAEE 55
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: D0UQS7_ISCVE (Acetylglucosaminyl-transferase (Fragment) n=5 Tax=Pterygota TaxID=7496 RepID=D0UQS7_ISCVE)

HSP 1 Score: 52.8 bits (125), Expect = 6.550e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDVGHD 117
            +LAI T+R AI+L+PNFPDAY NL NAL+E GQ+    +
Sbjct:    3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVSEAEE 41
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BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Match: D0UQS8_LIBEM (Protein O-GlcNAc transferase (Fragment) n=3 Tax=Malacostraca TaxID=6681 RepID=D0UQS8_LIBEM)

HSP 1 Score: 52.8 bits (125), Expect = 6.770e-7
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:    1 ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDVGHD 117
            +LAI T+R AI+L+PNFPDAY NL NAL+E GQ+    +
Sbjct:    3 DLAIDTYRRAIELQPNFPDAYCNLANALKEKGQVSEAEE 41
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195777.5456.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A397BI30_9STRA9.010e-1080.00Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A397CTS5_9STRA1.020e-980.00Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A813C116_9DINO1.560e-880.00Ogt protein (Fragment) n=1 Tax=Symbiodinium sp. KB... [more]
A0A1W0A6E6_9STRA1.690e-886.67Protein O-GlcNAc transferase (Fragment) n=1 Tax=Th... [more]
A0A7R8ZT13_9CRUS5.940e-868.57Hypothetical protein n=1 Tax=Cyprideis torosa TaxI... [more]
UPI00193DB5C19.300e-858.97UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
A0A1B0C9V7_LUTLO9.510e-863.89Uncharacterized protein n=1 Tax=Lutzomyia longipal... [more]
A0A8J5TJ15_HOMAM5.300e-758.97UDP-N-acetylglucosamine--peptide N-acetylglucosami... [more]
D0UQS7_ISCVE6.550e-758.97Acetylglucosaminyl-transferase (Fragment) n=5 Tax=... [more]
D0UQS8_LIBEM6.770e-758.97Protein O-GlcNAc transferase (Fragment) n=3 Tax=Ma... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195777contigH-elongata_contig195777:857..976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.5102441-CDS-H-elongata_contig195777:856..9761622930111.5102441-CDS-H-elongata_contig195777:856..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195777 857..976 -
1691679284.9136162-CDS-H-elongata_contig195777:856..9761691679284.9136162-CDS-H-elongata_contig195777:856..976Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195777 857..976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195777.5456.1prot_H-elongata_contig195777.5456.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195777 857..976 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195777.5456.1

>prot_H-elongata_contig195777.5456.1 ID=prot_H-elongata_contig195777.5456.1|Name=mRNA_H-elongata_contig195777.5456.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=40bp
ELAIRTFRYAIQLEPNFPDAYNNLGNALREAGQLDVGHD*
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mRNA from alignment at H-elongata_contig195777:857..976-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195777.5456.1 ID=mRNA_H-elongata_contig195777.5456.1|Name=mRNA_H-elongata_contig195777.5456.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=120bp|location=Sequence derived from alignment at H-elongata_contig195777:857..976- (Himanthalia elongata Himel1 dioecious)
GAGTTAGCCATCCGGACCTTCCGCTACGCCATACAGTTGGAGCCGAACTT
TCCCGATGCGTACAACAACCTCGGGAACGCGCTGAGGGAAGCTGGGCAGC
TCGACGTGGGTCATGATTGA
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Coding sequence (CDS) from alignment at H-elongata_contig195777:857..976-

>mRNA_H-elongata_contig195777.5456.1 ID=mRNA_H-elongata_contig195777.5456.1|Name=mRNA_H-elongata_contig195777.5456.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=240bp|location=Sequence derived from alignment at H-elongata_contig195777:857..976- (Himanthalia elongata Himel1 dioecious)
GAGTTAGCCATCCGGACCTTCCGCTACGCCATACAGTTGGAGCCGAACTT
TCCCGATGCGTACAACAACCTCGGGAACGCGCTGAGGGAAGCTGGGCAGC
TCGACGTGGGTCATGATTGAGAGTTAGCCATCCGGACCTTCCGCTACGCC
ATACAGTTGGAGCCGAACTTTCCCGATGCGTACAACAACCTCGGGAACGC
GCTGAGGGAAGCTGGGCAGCTCGACGTGGGTCATGATTGA
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