mRNA_H-elongata_contig19572.5455.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19572.5455.1
Unique NamemRNA_H-elongata_contig19572.5455.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: D7FZY0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY0_ECTSI)

HSP 1 Score: 182 bits (463), Expect = 5.530e-53
Identity = 92/121 (76.03%), Postives = 103/121 (85.12%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLP-ADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            VLTFEPSNSNLMDVRWS+ARPLVF+AVAEDGGIFIYDLLQSPVIPVASA LP  D    PRS  + V ++ A GAAYSV+FNP+QRDLLATGDS+GRVI+W +SWRLANK PGE   +ERL
Sbjct:  379 VLTFEPSNSNLMDVRWSRARPLVFAAVAEDGGIFIYDLLQSPVIPVASAQLPRGDALFHPRSRLVDVNDKGAVGAAYSVSFNPRQRDLLATGDSRGRVIVWRMSWRLANKRPGEDAGLERL 499          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A024GFE1_9STRA (Aconitase_C domain-containing protein (Fragment) n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GFE1_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 1.350e-18
Identity = 46/122 (37.70%), Postives = 66/122 (54.10%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASA--HLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            V+   P++S L  V WSK RP VF   AEDG ++IYDL+   + PV +   H  ADG     +  +            ++ FNP+QR+ +A GD+ G++ IW +SWRLAN    E   +E L
Sbjct:  640 VIEVSPTSSYLYAVAWSKTRPAVFGVTAEDGNVYIYDLMMDKIAPVVTLKKHETADGIVAKSTSPM-----------LALDFNPRQRNFVAAGDAAGKIYIWKLSWRLANLQSDEMTVLEAL 750          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: UPI001B7F1F15 (WD repeat-containing protein 34 n=1 Tax=Carcharodon carcharias TaxID=13397 RepID=UPI001B7F1F15)

HSP 1 Score: 84.0 bits (206), Expect = 1.780e-16
Identity = 48/120 (40.00%), Postives = 64/120 (53.33%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            VL+ + S S L  V WS  RPLVF+A   DG + I+DL QS + PV S    A+   +                 Y +AFNPKQ +LLA G+S+G V IW +S  L N+ P E   +E+L
Sbjct:  393 VLSLQLSQSYLFSVNWSSIRPLVFAAATGDGTVLIFDLGQSSLCPVVSIEQTAERKPV-----------------YCLAFNPKQPELLAAGNSEGSVKIWRLSAELTNQGPREMTLLEQL 495          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S3EYX0_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EYX0_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.350e-14
Identity = 43/116 (37.07%), Postives = 64/116 (55.17%), Query Frame = 1
Query:   13 EPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            EP  S++  V WS +RP+VF+A A DG ++IYD+ +S   P  +  +  D +                 A +SV FNP+  DL+ATGD+QG V IW +S  L++  P E   ++RL
Sbjct:  155 EPCASSIFSVDWSPSRPMVFAAGAADGNLYIYDMKRSKGKPDVTLKVTDDRS-----------------AVHSVVFNPRNPDLVATGDAQGFVKIWRLSHFLSHLAPREQQLLDRL 253          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: B3S2X2_TRIAD (Uncharacterized protein (Fragment) n=2 Tax=Trichoplax TaxID=10227 RepID=B3S2X2_TRIAD)

HSP 1 Score: 75.9 bits (185), Expect = 1.150e-13
Identity = 39/120 (32.50%), Postives = 63/120 (52.50%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            +L+FEP N  + +++WS  RP+VF+    +G + IYDL  S + PV +               L V + ++    YS+ FN ++R LLATGD  G++ IW ++  L N+   E   +  L
Sbjct:  322 ILSFEPGNGFMFNIKWSPVRPMVFATSTAEGSLLIYDLEISKINPVIN---------------LAVNDNKS--PVYSLQFNKQRRQLLATGDGNGKIQIWRLNDELTNQKTRETHHLAEL 424          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: UPI001CF5A4E0 (cytoplasmic dynein 2 intermediate chain 2-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF5A4E0)

HSP 1 Score: 75.5 bits (184), Expect = 1.700e-13
Identity = 42/113 (37.17%), Postives = 61/113 (53.98%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGE 339
            + + EP    L  VRWS +RPLVFSAV  DG + IYDL  + + P  S  + +D + +                 YS+ +N ++R ++ATGDSQGR+ IW +S  L N+   E
Sbjct:  393 LFSVEPGAGYLFRVRWSPSRPLVFSAVTGDGRLLIYDLKVNRINPSVSLEVTSDKSPV-----------------YSLEYNLQRRQIVATGDSQGRIKIWRLSDDLTNQSARE 488          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S4VTD3_9DINO (Hypothetical protein n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VTD3_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 4.440e-13
Identity = 44/125 (35.20%), Postives = 63/125 (50.40%), Query Frame = 1
Query:    1 VLTFEPSNSNLMD-----VRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            +LT  P + +L         WS ARP VF+   E GG++IYD+LQS   PV    L A G+                    S+AFNP+QR LLA GD+ GRV ++ + ++L+ +   E  +I  L
Sbjct:  452 LLTLFPPSKHLSTCAVSAASWSSARPCVFAVAMEMGGVYIYDMLQSKQEPVLQLPLAASGSQ----------------KVTSLAFNPRQRGLLACGDAGGRVRVFRLPFKLSEQQKAEMSEISGL 560          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A7S3HF85_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HF85_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.020e-12
Identity = 48/143 (33.57%), Postives = 68/143 (47.55%), Query Frame = 1
Query:    7 TFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYS-------------------------VAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            TF P ++      +S  RPLVF+A + DG +++YDL  +P+ PVAS   P     LP   A    +  A GA+ S                         +AFNPKQR L+A  D  GRV IW +SW+L+N    E   ++ +
Sbjct:   72 TFSPISA----ASFSPIRPLVFAATSSDGFVYLYDLGANPLSPVASLECPL----LPPVSAEDAAKEAARGASVSTKHKPVAHKKASGGDAAHNRVTVTGLAFNPKQRGLIAACDYLGRVHIWKLSWKLSNIKADEQSTLDAI 206          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A0N8K258_SCLFO (Uncharacterized protein n=1 Tax=Scleropages formosus TaxID=113540 RepID=A0A0N8K258_SCLFO)

HSP 1 Score: 71.2 bits (173), Expect = 4.060e-12
Identity = 39/120 (32.50%), Postives = 61/120 (50.83%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            +++ +  +S +  VRWS  RPL+F+A   +G + I+DL    + PVA+    + G  +                 Y + FNP+Q  LLA G++ G V IWH+S  L  + P E  Q+E L
Sbjct:  245 LVSLQVCDSYVFGVRWSPTRPLLFAAATGEGSVHIFDLGGMSLRPVATIEQKSGGRPV-----------------YCLEFNPRQTHLLAMGNADGTVNIWHLSTELTEQGPKEVAQLEHL 347          
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Match: A0A3P8Z053_ESOLU (WD repeat domain 34 n=3 Tax=Esox lucius TaxID=8010 RepID=A0A3P8Z053_ESOLU)

HSP 1 Score: 70.9 bits (172), Expect = 7.110e-12
Identity = 43/120 (35.83%), Postives = 59/120 (49.17%), Query Frame = 1
Query:    1 VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAHLPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIWHVSWRLANKMPGECDQIERL 360
            +L+   S+S L  VRWS  RPLVF+A    G + I+DL +  + P A+      G                   AY + FNP Q DLLA G++ G V IWH+S  L  +   E  Q+E+L
Sbjct:  394 LLSLRVSDSYLFGVRWSPTRPLVFAAATGQGLVQIFDLGRKSLRPAATMDQLTSGQP-----------------AYCMEFNPCQTDLLAVGNADGSVNIWHLSTELTEQGHRETAQLEQL 496          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19572.5455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FZY0_ECTSI5.530e-5376.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024GFE1_9STRA1.350e-1837.70Aconitase_C domain-containing protein (Fragment) n... [more]
UPI001B7F1F151.780e-1640.00WD repeat-containing protein 34 n=1 Tax=Carcharodo... [more]
A0A7S3EYX0_9EUKA1.350e-1437.07Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
B3S2X2_TRIAD1.150e-1332.50Uncharacterized protein (Fragment) n=2 Tax=Trichop... [more]
UPI001CF5A4E01.700e-1337.17cytoplasmic dynein 2 intermediate chain 2-like n=3... [more]
A0A7S4VTD3_9DINO4.440e-1335.20Hypothetical protein n=1 Tax=Alexandrium monilatum... [more]
A0A7S3HF85_9STRA2.020e-1233.57Hypothetical protein (Fragment) n=2 Tax=Spumella e... [more]
A0A0N8K258_SCLFO4.060e-1232.50Uncharacterized protein n=1 Tax=Scleropages formos... [more]
A0A3P8Z053_ESOLU7.110e-1235.83WD repeat domain 34 n=3 Tax=Esox lucius TaxID=8010... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19572contigH-elongata_contig19572:321..893 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score184.1
Seed ortholog evalue3.8e-44
Seed eggNOG ortholog2880.D7FZY0
Preferred nameWDR34
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030286,GO:0030705,GO:0031503,GO:0032838,GO:0032991,GO:0035735,GO:0036064,GO:0042073,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045504,GO:0046907,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060271,GO:0070925,GO:0071840,GO:0097014,GO:0097542,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
Ec32 ortholog descriptionWD40-repeat-containing domain
Ec32 orthologEc-22_003670.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size360
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.4436388-CDS-H-elongata_contig19572:320..4011622930111.4436388-CDS-H-elongata_contig19572:320..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19572 321..401 +
1691679284.8959439-CDS-H-elongata_contig19572:320..4011691679284.8959439-CDS-H-elongata_contig19572:320..401Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19572 321..401 +
1622930111.4619746-CDS-H-elongata_contig19572:614..8931622930111.4619746-CDS-H-elongata_contig19572:614..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19572 615..893 +
1691679284.9059455-CDS-H-elongata_contig19572:614..8931691679284.9059455-CDS-H-elongata_contig19572:614..893Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19572 615..893 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19572.5455.1prot_H-elongata_contig19572.5455.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19572 321..893 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19572.5455.1

>prot_H-elongata_contig19572.5455.1 ID=prot_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
VLTFEPSNSNLMDVRWSKARPLVFSAVAEDGGIFIYDLLQSPVIPVASAH
LPADGTDLPRSGALCVGEREACGAAYSVAFNPKQRDLLATGDSQGRVIIW
HVSWRLANKMPGECDQIERL
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mRNA from alignment at H-elongata_contig19572:321..893+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19572.5455.1 ID=mRNA_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=573bp|location=Sequence derived from alignment at H-elongata_contig19572:321..893+ (Himanthalia elongata Himel1 dioecious)
GTGCTCACCTTCGAGCCCTCCAACTCCAATCTGATGGACGTGAGATGGAG CAAAGCGAGACCGCTTGTGTTCTCGGCTGTGGTAAGGGCATTGGACATCG GCCGCGAGGACGTCGGACCCATCACTGTAGAGAAAACGTGCATACTGCAC GAGACGCGAGACCGAATGTGACTTAACCCCGCATACATCACCCGCGCTCA CCCTATCATTCGGTTGAAAATCACTGTACGACTCCATAAAATCCACTTAG TTACACTCTTAGCAAACACCTTCCTTGTTGTTGCCATTGAATAGGCGGAG GACGGTGGCATATTTATCTACGACCTTCTCCAAAGCCCGGTCATTCCCGT CGCGAGTGCGCACCTTCCCGCGGACGGTACAGACCTCCCCAGATCAGGTG CATTGTGCGTCGGTGAAAGGGAAGCTTGTGGGGCTGCATACTCGGTAGCA TTCAACCCCAAGCAGCGAGATCTGTTGGCGACGGGTGACAGCCAGGGGAG GGTGATCATCTGGCACGTGAGCTGGCGCCTGGCGAACAAAATGCCGGGGG AATGCGACCAAATAGAACGACTC
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Coding sequence (CDS) from alignment at H-elongata_contig19572:321..893+

>mRNA_H-elongata_contig19572.5455.1 ID=mRNA_H-elongata_contig19572.5455.1|Name=mRNA_H-elongata_contig19572.5455.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig19572:321..893+ (Himanthalia elongata Himel1 dioecious)
GTGCTCACCTTCGAGCCCTCCAACTCCAATCTGATGGACGTGAGATGGAG
CAAAGCGAGACCGCTTGTGTTCTCGGCTGTGGTGCTCACCTTCGAGCCCT
CCAACTCCAATCTGATGGACGTGAGATGGAGCAAAGCGAGACCGCTTGTG
TTCTCGGCTGTGGCGGAGGACGGTGGCATATTTATCTACGACCTTCTCCA
AAGCCCGGTCATTCCCGTCGCGAGTGCGCACCTTCCCGCGGACGGTACAG
ACCTCCCCAGATCAGGTGCATTGTGCGTCGGTGAAAGGGAAGCTTGTGGG
GCTGCATACTCGGTAGCATTCAACCCCAAGCAGCGAGATCTGTTGGCGAC
GGGTGACAGCCAGGGGAGGGTGATCATCTGGCACGTGAGCTGGCGCCTGG
CGAACAAAATGCCGGGGGAATGCGACCAAATAGAACGACTCGCGGAGGAC
GGTGGCATATTTATCTACGACCTTCTCCAAAGCCCGGTCATTCCCGTCGC
GAGTGCGCACCTTCCCGCGGACGGTACAGACCTCCCCAGATCAGGTGCAT
TGTGCGTCGGTGAAAGGGAAGCTTGTGGGGCTGCATACTCGGTAGCATTC
AACCCCAAGCAGCGAGATCTGTTGGCGACGGGTGACAGCCAGGGGAGGGT
GATCATCTGGCACGTGAGCTGGCGCCTGGCGAACAAAATGCCGGGGGAAT
GCGACCAAATAGAACGACTC
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