mRNA_H-elongata_contig195601.5453.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195601.5453.1
Unique NamemRNA_H-elongata_contig195601.5453.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195601.5453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195601contigH-elongata_contig195601:349..881 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size508
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195601.5453.1prot_H-elongata_contig195601.5453.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195601 353..686 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.1170518-UTR-H-elongata_contig195601:348..3521622930111.1170518-UTR-H-elongata_contig195601:348..352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195601 349..352 -
1691679284.7299714-UTR-H-elongata_contig195601:348..3521691679284.7299714-UTR-H-elongata_contig195601:348..352Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195601 349..352 -
1622930111.1889482-UTR-H-elongata_contig195601:686..8811622930111.1889482-UTR-H-elongata_contig195601:686..881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195601 687..881 -
1691679284.7666771-UTR-H-elongata_contig195601:686..8811691679284.7666771-UTR-H-elongata_contig195601:686..881Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195601 687..881 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930111.129485-CDS-H-elongata_contig195601:352..5871622930111.129485-CDS-H-elongata_contig195601:352..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195601 353..587 -
1691679284.7399335-CDS-H-elongata_contig195601:352..5871691679284.7399335-CDS-H-elongata_contig195601:352..587Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195601 353..587 -
1622930111.1617785-CDS-H-elongata_contig195601:612..6861622930111.1617785-CDS-H-elongata_contig195601:612..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195601 613..686 -
1691679284.75483-CDS-H-elongata_contig195601:612..6861691679284.75483-CDS-H-elongata_contig195601:612..686Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195601 613..686 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195601.5453.1

>prot_H-elongata_contig195601.5453.1 ID=prot_H-elongata_contig195601.5453.1|Name=mRNA_H-elongata_contig195601.5453.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
MIVGWVIPPRCVFKATDFPMFPCSRQRRVMIFMFLKTVTLDRVRRWYPEG
RSFKAWHRWHRPRSYSQQLLVYIPAQYTRWTHREILGPPARHRRHCCFQW
KR*
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mRNA from alignment at H-elongata_contig195601:349..881-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195601.5453.1 ID=mRNA_H-elongata_contig195601.5453.1|Name=mRNA_H-elongata_contig195601.5453.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=533bp|location=Sequence derived from alignment at H-elongata_contig195601:349..881- (Himanthalia elongata Himel1 dioecious)
TGTCGTTGTTGTTGTTTATTAAAAAACCTTGAACGATATAGAATCTCCGA
TGTCTAATCTCCGATCAGAGCAATCGTAACATCAACTTTGCTTTTCCAGA
GAGCTCCTGTAACAGTATCAGGCACCGAGTACCAACTGTACGATCTCGCA
CTCGTAGTGTTTAAAACAACTCCCAAACATACTCTGTAGAGCGAAATGAT
CGTGGGATGGGTGATTCCGCCTCGTTGCGTTTTCAAAGCTACGGATTTTC
CGATGTTTCCATGCTCTCGGCGAGACCGAGGATATATTCTCGAGGCAACG
ACGGGTCATGATATTCATGTTTCTGAAGACCGTGACTTTGGACAGGGTTC
GCCGCTGGTATCCCGAGGGCCGTTCCTTCAAAGCATGGCATCGTTGGCAT
CGTCCGCGTTCGTATTCTCAACAGCTCTTGGTTTATATCCCAGCGCAGTA
CACTCGATGGACGCACAGAGAGATCCTCGGACCGCCCGCCCGCCACCGCC
GGCACTGCTGCTTCCAGTGGAAAAGATAAGGGT
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Coding sequence (CDS) from alignment at H-elongata_contig195601:349..881-

>mRNA_H-elongata_contig195601.5453.1 ID=mRNA_H-elongata_contig195601.5453.1|Name=mRNA_H-elongata_contig195601.5453.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig195601:349..881- (Himanthalia elongata Himel1 dioecious)
ATGATCGTGGGATGGGTGATTCCGCCTCGTTGCGTTTTCAAAGCTACGGA
TTTTCCGATGTTTCCATGCTCTCGATGATCGTGGGATGGGTGATTCCGCC
TCGTTGCGTTTTCAAAGCTACGGATTTTCCGATGTTTCCATGCTCTCGGC
AACGACGGGTCATGATATTCATGTTTCTGAAGACCGTGACTTTGGACAGG
GTTCGCCGCTGGTATCCCGAGGGCCGTTCCTTCAAAGCATGGCATCGTTG
GCATCGTCCGCGTTCGTATTCTCAACAGCTCTTGGTTTATATCCCAGCGC
AGTACACTCGATGGACGCACAGAGAGATCCTCGGACCGCCCGCCCGCCAC
CGCCGGCACTGCTGCTTCCAGTGGAAAAGATAAGCAACGACGGGTCATGA
TATTCATGTTTCTGAAGACCGTGACTTTGGACAGGGTTCGCCGCTGGTAT
CCCGAGGGCCGTTCCTTCAAAGCATGGCATCGTTGGCATCGTCCGCGTTC
GTATTCTCAACAGCTCTTGGTTTATATCCCAGCGCAGTACACTCGATGGA
CGCACAGAGAGATCCTCGGACCGCCCGCCCGCCACCGCCGGCACTGCTGC
TTCCAGTGGAAAAGATAA
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