mRNA_H-elongata_contig19542.5447.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19542.5447.1
Unique NamemRNA_H-elongata_contig19542.5447.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: D7FT67_ECTSI (PUB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT67_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 6.020e-109
Identity = 198/334 (59.28%), Postives = 231/334 (69.16%), Query Frame = 1 
Query:    1 VCTAALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSED-----LVASAYSIGSTSGSGG-RMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQR--PTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVAGGIPE-RNIQFQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGEAEGAYLKVELVC-----VGGSSSSVARPVGVSLEEGGEGGGAEASKLQAGTRASMGA----------KKTRSGGGSKKPGWLKIN 930
            VC AALEAMAAGHFDADS ACV TLA+++DNVVHRP ++RTRQ+RC N+AF  KVGRI GGI FLEG+GFVS+ +            S G   GS G R LVLP +RED  LLK AR LL K A  LGVPR++MPQPPR R  P P  AG AS+  A FDPYKPF++ST PTPKG +E SLTEKRLQ LL KRA+VV+GG P+ RNIQF+LYVSPPR VLK  SSLS+AGLVPAALVYVSW+ VPP GEAEGAYLK ELV         ++++ ARPVGV+L+ G +  G+E SK   G+                   R+G    KP WLKIN
Sbjct:   15 VCRAALEAMAAGHFDADSEACVTTLAKVIDNVVHRPGDSRTRQIRCGNAAFQHKVGRITGGISFLEGVGFVSREDGPQXXXXXXXXXSGGDGRGSAGDRFLVLPPEREDAGLLKAARDLLSKQAEALGVPRERMPQPPRVRTSPPPRSAGQASA-AAAFDPYKPFMTSTAPTPKGPQESSLTEKRLQELLAKRAAVVSGGAPQDRNIQFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGEAEGAYLKRELVSGSTPGAAAAAAASARPVGVALDGGAK--GSEESKTGGGSAXXXSRLXXXXXXXXXXXKRTG----KPSWLKIN 341
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A6H5LNR6_9PHAE (UBX domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LNR6_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 4.130e-82
Identity = 187/445 (42.02%), Postives = 222/445 (49.89%), Query Frame = 1 
Query:    1 VCTAALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSED------LVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVA------------------------------------------GG---------IPERNIQ------------------------------------------------------------------FQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGEAEGAYLKVELVC---VGGSSSSVARPVGVSLEEGGEGGGAEASKLQAGTRASMGAKKT---------RSGGGSKKPGWLKIN 930
            VC AALEAMAAGHFDADS ACV TLA+++DNVVHRP ++RTRQ+RC+N+AF  KVGRI GGI FLEG+GFVS+ E                    +G R LVL  +RED  LLK AR LL K A  LGVPR++MPQPPR RP+P    A  +  A FDPYKPF++ST PTPK  +E SLTEKRL+ LL KRA+VV                                           GG         I ER  Q                                                                  F+LYVSPPR VLK  SSLS+AGLVPAALVYVSW+ VPP GEAEG YLK EL+     G ++++ ARPVGV+L+ G +  G+E SK   G+                  R+G    KP WLKIN
Sbjct:   15 VCRAALEAMAAGHFDADSQACVTTLAKVIDNVVHRPGDSRTRQIRCANAAFQHKVGRITGGISFLEGVGFVSREEGPQXXXXXXXXXXXXXXXXSAGDRFLVLAPEREDAGLLKAARDLLSKQAEALGVPRERMPQPPRARPSPPPPSAGQAAPAAFDPYKPFMTSTAPTPKDPQESSLTEKRLEELLAKRAAVVTLPSQXXXXXXXXXXXXFSVGAAGRERDGSSGMGXXXDGERGDGGLLAKKVARQIAERKKQDEVPFQTKAMRDIERLQKSTVYRTTVIKVQFPDRVVLQSTFASTEGVKDLLDVVKSSLEDDVAARPFELYVSPPRVVLKAASSLSDAGLVPAALVYVSWREVPPTGEAEGGYLKRELLSGTTPGTAAAASARPVGVALDGGAK--GSEESKTGGGSAXXXXXXXXXXXXXXXXXRTG----KPSWLKIN 453
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A662X4H9_9STRA (PUB domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X4H9_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 6.090e-20
Identity = 76/249 (30.52%), Postives = 118/249 (47.39%), Query Frame = 1 
Query:   13 ALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVAGGIPERNIQFQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGE--AEGAYLKVELV 753
            AL+ +    FDA S   + TL +IV N++  PD  + R +R SN+AF++ VG+++GG+EFL+ +GFV   E                 ++L L S ++ +  L+E   LL   A  L + R+  P    ++P           + +FD +K  I+               +  +  + E  AS  A      +  F LYV+PP   L    +L++  LVPAAL Y+SW  VPP  E  A G Y + +LV
Sbjct:   86 ALQLLRDSSFDAVSRGAITTLMKIVTNILSHPDNEKLRSIRLSNAAFNRSVGQVKGGLEFLQSVGFVVVHET----------------QILTLRSVQDCKQKLEEGLRLLYIEADDLSIARETRPVVVEEKPA----------DPSFDVFKTQITRMQVRSAAFHPSETIQDVMNHVKECLASAYA------DHPFFLYVTPPTQKLAAEKTLADLNLVPAALTYLSWLEVPPQPEQAAVGFYFRPDLV 302
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BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A8J5JF70_9STRA (Uncharacterized protein n=1 Tax=Phytophthora aleatoria TaxID=2496075 RepID=A0A8J5JF70_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 1.120e-17
Identity = 72/247 (29.15%), Postives = 116/247 (46.96%), Query Frame = 1 
Query:   13 ALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVAGGIPERNIQFQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGEAE-GAYLKVEL 750
            AL+ +   +FDA S   V TL ++V N++   +  + R +R SN+AF++ VG+++GG+EFL  +GF    E                 +MLVL     D+++L+E   LL   A  L +P D  P           A    + +  FD +K  I+         +      + +Q +++     +A     +  +F LYV+PP   L    +L+E  LVPAAL Y+SW  VP    A  G Y++ +L
Sbjct:  240 ALQLLRDNNFDAVSRTAVTTLMKVVTNILSDLENDKVRSIRLSNAAFYRTVGQVKGGMEFLTSVGFAVVPET----------------QMLVLSPSPSDKSVLEEGLRLLSIEADDLNIPPDSRP-----------AVREKNADPNFDVFKTQITRV-------QASFHPNETIQDVIDHVTECLAAQY--KTSRFYLYVTPPTQKLATAKTLAELNLVPAALTYLSWLEVPQAEIASTGFYIRRDL 450
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BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: G4YTH0_PHYSP (UBX domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YTH0_PHYSP)

HSP 1 Score: 89.7 bits (221), Expect = 2.750e-16
Identity = 86/326 (26.38%), Postives = 128/326 (39.26%), Query Frame = 1 
Query:   13 ALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKG--------------------------------------QEEQSLTEK-RLQALLE--------------------KRASVVAGGIPERNIQ------------------FQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGEAE--GAYLKVELV 753
            AL+ +  G FDA S   + TL +IV N++  P+  + R +R SN+AFH+ VG+++GG+EFL+ +GF    E                 + +VL    +D+ +L+E   LL+  A  L +  D  P    +R  P           +FD +K  I+     P+G                                      +EE   T+  R QA+ E                     RA + A   P   IQ                  F LYV+PP   L    +L++  LVPAAL Y+SW  +PP  E    G Y + +LV
Sbjct:  238 ALQLLRDGSFDAVSRTAITTLMKIVTNILSDPENEKIRSIRLSNAAFHRSVGQVKGGLEFLQSLGFALVPET----------------QTIVLSPSPQDKGVLQEGLRLLNVEANDLNIAPDTRPTVREKRSDP-----------SFDVFKTQITRVQMQPRGPSTTEVLVDALKTXXXXXXXXXXXXXXXXXXXXXXXGRREEMEKTKNFRTQAMRELDELKRKKVFQTALIRVQFPDRAVMQASFHPNETIQDVMDHVTECLAEQFKGGKFYLYVTPPTQKLAPAKTLADLNLVPAALTYLSWSEMPPQAEVPSIGFYFRSDLV 536
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BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A5D6XXN3_9STRA (UBX domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XXN3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 7.760e-15
Identity = 86/291 (29.55%), Postives = 128/291 (43.99%), Query Frame = 1 
Query:   13 ALEAMAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDL---VASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPP------------RQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQ-----EEQSLTEKRLQALLE-KRASVV---AGGIPERNIQ------------------FQLYVSPPRTVLKETSSLSEAGLVPAALVYVSWKNVPPPGEA--EGAYLKVELV 753
            AL+ +    FDA +   V TL +I+ NV+  P+  + R +R SN+ F + VG++RGG+EFL+ +GF    + L   + SA    +    G R+L   +D  +       +V++ + A       D  P+ P            +Q    G    A +   T  P +P  ++T     G+     EE S+  K L + L+ KRA      A   P   +Q                  F LYVSPPR  L    +L+E  LVPAAL Y+SW +  P  E    G+YL   LV
Sbjct:  238 ALQLLRDSCFDATARGAVTTLMKILTNVLSHPENDKMRSIRVSNAVFQRSVGQLRGGVEFLQSVGFALDQDALYLVLQSAVDASAALQDGLRLLHTEADDLNIEEAARPQVIVPRAA---DPSFDAQPRGPSATEVLVDNLKSKQEQLLGHETPARNTVVTL-PGRPATAATATGDTGEDVAMDEEHSIDSKLLISTLKAKRAEAEKAKAAFHPNETVQAVLDHVTENLRPAFSSHAFYLYVSPPRQKLSPEKTLAELSLVPAALAYLSWVDAAPASETGVAGSYLCESLV 524
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A1Z5KM45_FISSO (UBX domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM45_FISSO)

HSP 1 Score: 82.4 bits (202), Expect = 6.410e-14
Identity = 65/186 (34.95%), Postives = 97/186 (52.15%), Query Frame = 1 
Query:   31 AGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQ------SLTEKRLQALLEKRASVVA 570
            A +FDA+S  C++TL +I+DN++ +P + + R +R  N+AF  KVG  +GGIEFL   GF    E  +A A  +   +GSG   LVL  D + + LL   R+L  +    LG+  +++P+  R+ P     G A S  A F+PY            G +        S T+  LQ LLEK+A + A
Sbjct:   23 ANNFDAESKVCLITLMKIIDNILQKPSDPKVRTIRLQNAAFASKVGSRKGGIEFLLACGF----ERSIAPAPLL--NTGSGDEQLVLKDDHQSR-LLAARRILTMRAVQELGMKAEELPEY-REPPVVNLTGGAPS-AAEFNPYVGHRFDAQSLAVGVDLGPDPNYISKTDSELQKLLEKQAKLEA 199
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A397D135_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397D135_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.330e-13
Identity = 66/185 (35.68%), Postives = 93/185 (50.27%), Query Frame = 1 
Query:   40 FDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVAG-GIPERN 591
            FDA S+  V+TL +IV N++ +PDE + R +R +N  FH  VG+ +GG+ FL+ +GF  ++ +            GS     VLP D  D ALL+    LL   A       D +  PP  RP+      A+SP   FD YK  I+     P+G    S+TE RL+ L  K   ++A   IP RN
Sbjct:  238 FDAVSTDVVLTLMKIVCNILSKPDEPKVRSIRVANPKFHDAVGKHQGGVMFLQSLGFQQQTNE----------GEGSSPSHFVLPEDA-DTALLRRGLALLQDQA-------DDLRLPPTSRPS--VVVQAASP-VEFDAYKAVITRVQAQPRG---LSVTEMRLEDLKRKEEELLAMIHIPARN 398
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: A0A397C114_9STRA (UBX domain-containing protein n=11 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C114_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 6.240e-13
Identity = 66/185 (35.68%), Postives = 92/185 (49.73%), Query Frame = 1 
Query:   40 FDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFISSTTPTPKGQEEQSLTEKRLQALLEKRASVVAG-GIPERN 591
            FDA S+  V+TL +IV N++ +PDE + R +R +N  FH  VG+ +GG+ FL+ +GF   + +            GS     VLP D  D ALL+    LL   A       D +  PP  RP+      A+SP   FD YK  I+     P+G    S+TE RL+ L  K   ++A   IP RN
Sbjct:  238 FDAVSTDVVLTLMKIVCNILSKPDEPKVRSIRAANPKFHDAVGKHQGGVMFLQSLGFQQLTNE----------GEGSSPSHFVLPEDA-DSALLRRGLALLQDQA-------DDLRLPPTSRPS--VVVQAASP-VEFDAYKAVITRVQAQPRG---LSVTEMRLEDLKRKEEELLAMIHIPARN 398
[Close]
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Match: K0SQI5_THAOC (UBX domain-containing protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQI5_THAOC)

HSP 1 Score: 78.2 bits (191), Expect = 2.330e-12
Identity = 52/144 (36.11%), Postives = 82/144 (56.94%), Query Frame = 1 
Query:   37 HFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRIRGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLKEARVLLDKHAVI-LGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYK 465
            +FD+ +  C+VTL RI+DN++ +P+E + R +RC+N AF +KVG+ +GG EFL  IGF+ +        Y+    SG+   ML L ++ E + +L   R  L + AV  L +  D +P+ P+   TP  A   + P A+  P K
Sbjct:  240 NFDSSTKDCLVTLLRIIDNLLSKPNEPKVRSIRCANIAFDKKVGQCKGGYEFLYSIGFLPR--------YAALGGSGNIPEMLELKAENESREILLRGRQTLVQSAVRDLQLSSDDLPKFPKTN-TP--ASTLAQPPASIRPSK 372
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19542.5447.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FT67_ECTSI6.020e-10959.28PUB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LNR6_9PHAE4.130e-8242.02UBX domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A662X4H9_9STRA6.090e-2030.52PUB domain-containing protein n=2 Tax=Nothophytoph... [more]
A0A8J5JF70_9STRA1.120e-1729.15Uncharacterized protein n=1 Tax=Phytophthora aleat... [more]
G4YTH0_PHYSP2.750e-1626.38UBX domain-containing protein n=1 Tax=Phytophthora... [more]
A0A5D6XXN3_9STRA7.760e-1529.55UBX domain-containing protein n=1 Tax=Pythium bras... [more]
A0A1Z5KM45_FISSO6.410e-1434.95UBX domain-containing protein n=2 Tax=Fistulifera ... [more]
A0A397D135_9STRA3.330e-1335.68Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A397C114_9STRA6.240e-1335.68UBX domain-containing protein n=11 Tax=Aphanomyces... [more]
K0SQI5_THAOC2.330e-1236.11UBX domain-containing protein (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19542contigH-elongata_contig19542:964..6478 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.5
Seed ortholog evalue4.5e-17
Seed eggNOG ortholog42099.EPrPV00000021751
Preferred nameASPSCR1
KEGG koko:K03178,ko:K15627
KEGG Pathwayko04120,ko05012,ko05202,map04120,map05012,map05202
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009653,GO:0009893,GO:0009898,GO:0009987,GO:0010033,GO:0010243,GO:0010498,GO:0010604,GO:0010827,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0019222,GO:0019538,GO:0019898,GO:0019899,GO:0019941,GO:0022411,GO:0030154,GO:0030163,GO:0030433,GO:0030435,GO:0030659,GO:0031090,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031410,GO:0031974,GO:0031981,GO:0031982,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032879,GO:0032984,GO:0033036,GO:0033500,GO:0033554,GO:0034613,GO:0034762,GO:0034976,GO:0035265,GO:0036503,GO:0040007,GO:0042221,GO:0042592,GO:0042593,GO:0042886,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043632,GO:0043933,GO:0043934,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0046324,GO:0046907,GO:0048471,GO:0048518,GO:0048522,GO:0048589,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051117,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098552,GO:0098562,GO:1901564,GO:1901565,GO:1901575,GO:1901698
EggNOG free text desc.Ubiquitin-activating enzyme E1. Source PGD
EggNOG OGs1MAJ3@121069,COG0476@1,KOG2012@2759,KOG2699@1,KOG2699@2759
EC6.2.1.45
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons6
Model size933
Cds size909
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930110.5003319-CDS-H-elongata_contig19542:963..11811622930110.5003319-CDS-H-elongata_contig19542:963..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 964..1181 -
1691679284.4722006-CDS-H-elongata_contig19542:963..11811691679284.4722006-CDS-H-elongata_contig19542:963..1181Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 964..1181 -
1622930110.535223-CDS-H-elongata_contig19542:1344..14621622930110.535223-CDS-H-elongata_contig19542:1344..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 1345..1462 -
1691679284.49098-CDS-H-elongata_contig19542:1344..14621691679284.49098-CDS-H-elongata_contig19542:1344..1462Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 1345..1462 -
1622930110.558196-CDS-H-elongata_contig19542:4136..42681622930110.558196-CDS-H-elongata_contig19542:4136..4268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 4137..4268 -
1691679284.5052795-CDS-H-elongata_contig19542:4136..42681691679284.5052795-CDS-H-elongata_contig19542:4136..4268Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 4137..4268 -
1622930110.5792778-CDS-H-elongata_contig19542:4648..48351622930110.5792778-CDS-H-elongata_contig19542:4648..4835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 4649..4835 -
1691679284.5202956-CDS-H-elongata_contig19542:4648..48351691679284.5202956-CDS-H-elongata_contig19542:4648..4835Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 4649..4835 -
1622930110.5952713-CDS-H-elongata_contig19542:5620..57361622930110.5952713-CDS-H-elongata_contig19542:5620..5736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 5621..5736 -
1691679284.5317721-CDS-H-elongata_contig19542:5620..57361691679284.5317721-CDS-H-elongata_contig19542:5620..5736Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 5621..5736 -
1622930110.607917-CDS-H-elongata_contig19542:6316..64541622930110.607917-CDS-H-elongata_contig19542:6316..6454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 6317..6454 -
1691679284.5430987-CDS-H-elongata_contig19542:6316..64541691679284.5430987-CDS-H-elongata_contig19542:6316..6454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19542 6317..6454 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930110.6235414-UTR-H-elongata_contig19542:6454..64781622930110.6235414-UTR-H-elongata_contig19542:6454..6478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19542 6455..6478 -
1691679284.5523434-UTR-H-elongata_contig19542:6454..64781691679284.5523434-UTR-H-elongata_contig19542:6454..6478Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig19542 6455..6478 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19542.5447.1prot_H-elongata_contig19542.5447.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19542 964..6454 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19542.5447.1

>prot_H-elongata_contig19542.5447.1 ID=prot_H-elongata_contig19542.5447.1|Name=mRNA_H-elongata_contig19542.5447.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=303bp
MAAGHFDADSSACVVTLARIVDNVVHRPDEARTRQLRCSNSAFHQKVGRI
RGGIEFLEGIGFVSKSEDLVASAYSIGSTSGSGGRMLVLPSDREDQALLK
EARVLLDKHAVILGVPRDKMPQPPRQRPTPGGAGAASSPEATFDPYKPFI
SSTTPTPKGQEEQSLTEKRLQALLEKRASVVAGGIPERNIQFQLYVSPPR
TVLKETSSLSEAGLVPAALVYVSWKNVPPPGEAEGAYLKVELVCVGGSSS
SVARPVGVSLEEGGEGGGAEASKLQAGTRASMGAKKTRSGGGSKKPGWLK
IN*
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mRNA from alignment at H-elongata_contig19542:964..6478-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19542.5447.1 ID=mRNA_H-elongata_contig19542.5447.1|Name=mRNA_H-elongata_contig19542.5447.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=5515bp|location=Sequence derived from alignment at H-elongata_contig19542:964..6478- (Himanthalia elongata Himel1 dioecious)
GTCTGCACGGCGGCGCTGGAAGCGATGGCCGCGGGGCACTTCGACGCCGA
CAGCTCCGCTTGTGTTGTAACCCTCGCGAGGATCGTGGACAACGTTGTGC
ACCGGCCAGACGAGGCACGGACGAGGCAGTTACGATGCTCCAACTCCGCC
TTCCACCAGAAGGTGATCGGGACGGTTTGAGTTTGAATTTTTAGGGTTGG
GATTTGTTTTTCGTTTGGCTTCGGCTTCGGCTTGGGCTTGGGTGGGTTGC
TCGGCAAGGCGTTTTTTTTGTGGCGAAGTCGGATGCTCGCGGTAACCAAA
GCGCTCGACACGAAGGATTTAAAGCCAAGGCTGGGCGTTTCAAGTGAAGA
CGTGGAGAGTCTGGGGTGTAGACGGTTTTCGTACAGGAGCGGAGACGTGA
TGCATGTGTGATAGTTTGATGCTTTTCGTTTGTCTGATCCAGCCATCCTG
CTTGCTCTTGCCTTTTGTTTTTCGTCTGCGTGTGTGTCTGTATTTATGAA
ATTGTGCGTAACTGTGCAATCCGGCCCTGTCGTGCTAGTCGTTCTAGGCT
ACTGTTCTCCCATCGGTCCTGGTCCTACCAACGGGGATCAACTATTCTAT
ATTTGAGACGTGGCAAAAGAGGCATGCTCTCTCTACCGCTGTTACGTAAG
CCCTCACCGTCATACGCTCCCCTGTGTGTGCTTCTGTGCGGATCTGTCAT
TGTATGTATGTCTGTCATTGTCTATCTTTTCGTCTGGGACAGGTCGGCCG
CATCCGGGGCGGCATTGAATTCCTGGAGGGTATCGGATTCGTGTCCAAGA
GCGAAGACTTGGTTGCGTCAGCGTACAGCATTGGCAGCACTAGCGGCTCT
GGCGGAAGGTACTTAATTGTACGGGGAAGCACTAGGGTCTCCTGCCGTAA
AGAGCAAAGCAAACTAAACTAAACTAAAAAACTAAACTAGCTGTAATAAT
TATGTCGTCATTTTCACCGCCCTTGAGTACAGCATAAAGGACAATACAAT
ATAATACCGTGGTACTAATACTACTAATACTGCTAATGATATGTTTACAA
GGTATATGTATAATAAATGCGATAGTGCTATACAGTACATTCTGGTAGAT
TGATAAGGTATGTACTATACGAGTATACATGCTAAGTACGGTACACGAAT
ATCTATACAGTACCCGGTACAGCCTGGTAGGTTAAAACTATTTTACAGGC
TCAACGCAGTGTCCTGCGAAGAGGTTGACAAGGGTATATATATCTAGAGG
ATATGCTCCATGCTATATGCTAGATAGTTGTACGTTGTAGCACACCGTAG
GGGGACGTCAACCCGTCTTTGCCTTTCTCGACAAGGTGGCCTTTGCTATT
GTAGTCACACGAAACACTTGAGGTTTTTATACAAGCTGTCACGGAGGATT
TCGCTAAAAAATGTGTCGTCTCGTCCTTGTACCCCGTCCTCGATCTCCCC
CCGTCATTGTAGAAAAAATCGAAAGGGGCCATTATTCCTGTGTCCCCGGG
GTGATGTTATGCCCCGTTACCCCTAAGGTAGAAAATATGTATATACCTTA
TACTAACACTAAAAAAAGCCCTGACCAAAAAACGAAAAACTTTCCCTCTC
TCACTCCCCTCCCCCCCCCGCAACTCCTTACCCTCGTACGAAGGATGCTG
GTGCTTCCGAGCGATCGCGAAGACCAAGCCCTGCTGAAGGAGGCGAGGGT
TCTCCTGGACAAACATGCGGTGATCTTAGGGGTGCCCCGCGACAAGATGC
CCCAGCCGCCGCGCCAACGACCAACCCCGGGGGGGGCAGGAGCAGCAAGC
TCCCCAGAAGCGACTTTCGACCCTTACAAGGTTTGGCGTCCTGTCTGTCC
GCGGGTCTTATTTTTTAGGGGGTATATAGCCTGTGCCTAAAAAAAAATGA
AAGTGAGAAAGAAAAAAGCAGGAAACAAAAATGCCTCTTCGGCTTGGAAA
ACACACTCCCACATAAAAGGCGCAAAGATACGGGGAGGCAGAGGAGATTC
TCATGAAGAAATCAAAACAAATAGGACCACGTATAGCAAGCAGTTTAGCA
GTATGTTTCTTCCTCGAAAACAACCCCGTTTCGCGAACGCCCCATCCTGT
ACAGTATTTGAGTTACCGTCCTCGCGGTACGTGCATGACCCGATTCCTGT
TTTGTGTACGCCGCCGTTGCCCCCCCCCCCCTCCGCGCCGCTTCTCTTTT
CCATCCATAGCCTTTCATTTCGTCTACCACACCCACACCCAAGGGCCAAG
AGGAGCAGTCCCTAACAGAGAAACGCCTCCAGGCTCTATTGGAAAAGAGG
GCAAGCGTCGTGGCCGGAGGTATCCCGGAGCGGAACATTCAGGTCAGTAG
GTGGCCAGCGCTGAAAATAAAAATGAGGATGGCGAGAGGGGGTTTTGAGC
AAGCGGGGCGAATAGAACCCTCCTCCTCAAAGTCGGTCCCTGGTGAGGTG
ATGGTGATGTGATCCCACGCGTGCGGAGGGGGGGAGTTGGGAGAGACCTG
CGGAGGGGCGTGAACGTGAAAGCGGTGGTGCCTGTCGTGGCCGCCAGCAC
AGTGCTAAGTGTATTCAGTAACGATTGACGCATCAAAATCAAGCACGTGA
TTGTGACTTAAGAGATTCACAACCGTGGGGCGCTGTCTGTGTTGGAAAGT
GGGCTATGCTGTCTTAGGAAAGCGGGCGGGGTCGTCTAAAAGGGCCGTGT
GATTGACTGTGTCCCCCCGTCGGCAGGTGACTTTTTCGAGCCAGGCAGCG
GCGTCGATTCCGGCACCCGTGGCCGGGAAGGAAGGTGGAAGGATAGGAGG
GGGAGGATCCAGAGAGATTTCGGCCATGGAAGGCGTTACAACAGCGGAAG
ACCGAGCGCTAATCACAAAGAAGGTGGTGCGGCAGACAGCGGAGAGAAAG
AAGCAAGAGGGTAAGATATACGCTCTCATTGGAAAGCTTTACTTTGAATT
CCATTCTTCGAGGGGGGCTATAGCTACCGAATGACTGTATTAAGATGAGA
TTTACCCGAAACTGCCCCTGGCCATTCCTTGTTTTTGCCATGCCGCGGTC
TGGAAAAAGTTGAACCGAAGGACTGCGGGTAACGTTAAAGCGATGAACAT
GACCGACCCCGATGCGTTCTCTCTATTGTGCCTTCGACGATCCGTGCTCT
TGCTGATCACACGCGGATTGCTGTTACCCGAGACTGCTGCCCCGCAACGC
AACACTCACTCCTCATTTTGATGTCATCCTTATTCCATGATCATGGTGTG
TTCGTTGTGCGACGTTGGTGATGATGGCGGACATGGTTTGAAAATTTCTG
GAAAAACTCGCGCGCATATCGTCCGATATATTACAAGCCACACCGTTTCA
GACAAAGGCCATGCGCGAGATCGAGCGCCTCCAGAAGGCAACGGTGTACC
GTACGACCATTATCAAGGTGTGTGTGTGTGTGTGTTTTGTCAACGTGCCG
TTATTTTTCACGCGATCGTTTGTAACTGCTCGGCTAGCTCTGCATACGAA
ATATTCATTTTGATAACAACTCTAGGTTGGTCGTGCTTTTACCGTCAGGT
GCGTGCTATTTTTGACTTGATTAGCAGTTCGAGTGTCTTGAGCGTCAAGG
GGGTTCTTGTTCATTTTCCCGACTTCGCACCGTCTCAAAAGCTCTTCTTG
CTGATATTCGTGTACCTCGCACCGAGATCTATTTCGGTCCATCTGCGTTC
AGCAGACGCGCAGATTGTTGCGCATGGATTGAGCGGCTGAGCGAGCTCGC
GGCTTTCGTTTGGTTGCTTTTTTCTTTCATTAAATCATCATCACCCTCCT
CAGTTACCGTCATCGCCCTCTAGCCTCCAGCCTCCAGTAGGCATATGTCA
AGTGTCTCGTTTTTTCCTTTCTCTTGCGTGGTTATTTTGCCTGTAGCACA
GGAGAGCGACTGGGGTATCTGTAGCACATGAGAGCACTATCTCAGTGGTG
TACTCAAACTGTGTACTTCCTTCCATGAAAATCGATGGTTAAAAGGCTAG
AGACTAGTAAAAACCTGGTATATCTACGAATCGCGTTGGGTTGTGTGTTG
GGAAGGGGTGTGTGTACACATGATCCAATCGAATCGAATATAATTGCCGA
GCGCGCCCGGAACGACTCGTAGATCCAATTCCCAGACCGAGCAATACTGC
AAGCGACTTTTTCTTCGACGGAAGGGGTGAAGGATCTCGAGCAGCTGGTC
CGAGAATCCTTCGGGGAGTCCTATCGGGAGAGGAAAGTGAGTAGCTGGGG
GGGCGGGGGCGGGGATGGGAGTGAGTGTTAGAGGTGCATGCGTAACTTTG
TGTTTACCGCGCTTGGGTTGGGTTACGGTAGTAATTATATTAGTACCAGT
AGTAACTATAATAGTACCAGTAGTAACTAAAATAGTACCAGTAGTAACTA
TAATAGTACCAGTAGTAACAGGTAGGCGGTCATAACCTTTTCCTACACGA
GTCCTAAGGTTCTCAGTGTGGGGGCGGTACATTCGTCTACTTAACGCGGG
GACAAATATCCTCTTCTACCCCGGGGGATTTGTTTTGGCTTTTTCGCTAA
GTCGAGGAGACTCTGCCAAATGTAAAGGCAAGATGTCATCGTTGACCGTC
CCGCTGCTAGGAGGCGTTATGCTGCGTCAAGGCGAGGCGTACGGTGGATG
AAAGCGCGGCGGCATTCCATATGAAATGAAGGAACATACAACATACTTAA
CCCCTATGGAACTCGATCTGTTTTTCTATATTAATTTCAACATAAAAAAT
GAAATTCAGTTCCAACAGGGTTAAACAAAACAGAGTGCTGCTGTAACGGG
GAATGCGAGGATGAGTACACGAGCCATGTACTCTGCCGTAGCGGTGTAGG
AGGTCCTAGAAAGGCAACCTGCGGCCATAAGTACTGACCGATGATTGCTG
ATTCCTACGACGCGTGTGCACCCTCTGCCCCTCGATTGCCGTGTGTTTTA
GTGCCTCTAAAATTATAATTCGTTTTTGTTTTTTGTCGGCGGCGGCTTTT
TCCGTCATGCATCCAGTTTCAGCTGTACGTCAGCCCCCCTAGAACGGTCC
TGAAGGAGACGTCGTCTTTGTCCGAAGCCGGTCTTGTCCCCGCCGCCCTG
GTGTATGTTTCCTGGAAGAACGTGCCTCCGCCGGGTGAGCTAGGGTACAG
TGATGTAAGTACGTCAGCGCAGAAATCGAGGTTTTATTTGCCGGTCTATC
CATTCGTCTGTTGGTACAGCTCCGAATGATTAATAAACGTTTTCCAATCA
GCCGTCCCGTACCTTAACATCTACGTTTCCCACCACACTCGTCACAGGCG
AGGCCGAAGGCGCGTACCTGAAGGTGGAACTAGTATGCGTCGGCGGGAGC
AGCAGTAGCGTGGCGCGTCCCGTCGGCGTTTCCTTGGAAGAAGGAGGAGA
AGGAGGGGGCGCGGAGGCGTCGAAGCTTCAGGCCGGGACCAGGGCTTCAA
TGGGGGCAAAAAAAACTCGTTCGGGGGGCGGGAGCAAGAAGCCGGGGTGG
TTGAAGATCAACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig19542:964..6478-

>mRNA_H-elongata_contig19542.5447.1 ID=mRNA_H-elongata_contig19542.5447.1|Name=mRNA_H-elongata_contig19542.5447.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1818bp|location=Sequence derived from alignment at H-elongata_contig19542:964..6478- (Himanthalia elongata Himel1 dioecious)
ATGGCCGCGGGGCACTTCGACGCCGACAGCTCCGCTTGTGTTGTAACCCT
CGCGAGGATCGTGGACAACGTTGTGCACCGGCCAGACGAGGCACGGACGA
GGCAGTTACGATGCTCCAACTCCGCCTTCCACCAGAAGATGGCCGCGGGG
CACTTCGACGCCGACAGCTCCGCTTGTGTTGTAACCCTCGCGAGGATCGT
GGACAACGTTGTGCACCGGCCAGACGAGGCACGGACGAGGCAGTTACGAT
GCTCCAACTCCGCCTTCCACCAGAAGGTCGGCCGCATCCGGGGCGGCATT
GAATTCCTGGAGGGTATCGGATTCGTGTCCAAGAGCGAAGACTTGGTTGC
GTCAGCGTACAGCATTGGCAGCACTAGCGGCTCTGGCGGAAGGTCGGCCG
CATCCGGGGCGGCATTGAATTCCTGGAGGGTATCGGATTCGTGTCCAAGA
GCGAAGACTTGGTTGCGTCAGCGTACAGCATTGGCAGCACTAGCGGCTCT
GGCGGAAGGATGCTGGTGCTTCCGAGCGATCGCGAAGACCAAGCCCTGCT
GAAGGAGGCGAGGGTTCTCCTGGACAAACATGCGGTGATCTTAGGGGTGC
CCCGCGACAAGATGCCCCAGCCGCCGCGCCAACGACCAACCCCGGGGGGG
GCAGGAGCAGCAAGCTCCCCAGAAGCGACTTTCGACCCTTACAAGGATGC
TGGTGCTTCCGAGCGATCGCGAAGACCAAGCCCTGCTGAAGGAGGCGAGG
GTTCTCCTGGACAAACATGCGGTGATCTTAGGGGTGCCCCGCGACAAGAT
GCCCCAGCCGCCGCGCCAACGACCAACCCCGGGGGGGGCAGGAGCAGCAA
GCTCCCCAGAAGCGACTTTCGACCCTTACAAGCCTTTCATTTCGTCTACC
ACACCCACACCCAAGGGCCAAGAGGAGCAGTCCCTAACAGAGAAACGCCT
CCAGGCTCTATTGGAAAAGAGGGCAAGCGTCGTGGCCGGAGGTATCCCGG
AGCGGAACATTCAGCCTTTCATTTCGTCTACCACACCCACACCCAAGGGC
CAAGAGGAGCAGTCCCTAACAGAGAAACGCCTCCAGGCTCTATTGGAAAA
GAGGGCAAGCGTCGTGGCCGGAGGTATCCCGGAGCGGAACATTCAGTTTC
AGCTGTACGTCAGCCCCCCTAGAACGGTCCTGAAGGAGACGTCGTCTTTG
TCCGAAGCCGGTCTTGTCCCCGCCGCCCTGGTGTATGTTTCCTGGAAGAA
CGTGCCTCCGCCGGTTTCAGCTGTACGTCAGCCCCCCTAGAACGGTCCTG
AAGGAGACGTCGTCTTTGTCCGAAGCCGGTCTTGTCCCCGCCGCCCTGGT
GTATGTTTCCTGGAAGAACGTGCCTCCGCCGGGCGAGGCCGAAGGCGCGT
ACCTGAAGGTGGAACTAGTATGCGTCGGCGGGAGCAGCAGTAGCGTGGCG
CGTCCCGTCGGCGTTTCCTTGGAAGAAGGAGGAGAAGGAGGGGGCGCGGA
GGCGTCGAAGCTTCAGGCCGGGACCAGGGCTTCAATGGGGGCAAAAAAAA
CTCGTTCGGGGGGCGGGAGCAAGAAGCCGGGGTGGTTGAAGATCAACTAA
GCGAGGCCGAAGGCGCGTACCTGAAGGTGGAACTAGTATGCGTCGGCGGG
AGCAGCAGTAGCGTGGCGCGTCCCGTCGGCGTTTCCTTGGAAGAAGGAGG
AGAAGGAGGGGGCGCGGAGGCGTCGAAGCTTCAGGCCGGGACCAGGGCTT
CAATGGGGGCAAAAAAAACTCGTTCGGGGGGCGGGAGCAAGAAGCCGGGG
TGGTTGAAGATCAACTAA
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