mRNA_H-elongata_contig195266.5443.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195266.5443.1
Unique NamemRNA_H-elongata_contig195266.5443.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig195266.5443.1 vs. uniprot
Match: D8LQT6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQT6_ECTSI)

HSP 1 Score: 95.5 bits (236), Expect = 1.080e-22
Identity = 46/72 (63.89%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 SDLPTPIDERVKLREIPERLYVVRQFSGNMGTGDGHDASAELERANTEKGVNADGGALGEYVGEDAKYLVAR 216
            SDLPTP D RV LRE+PE +Y+V QFSGNMG GDGHDA AE ER    + V ++GGA  EYV  D+K+LVAR
Sbjct:  123 SDLPTPTDSRVSLREVPEAVYLVHQFSGNMGRGDGHDAIAERERIVAVEKVASEGGAFSEYVSADSKFLVAR 194
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195266.5443.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQT6_ECTSI1.080e-2263.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195266contigH-elongata_contig195266:76..291 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.9
Seed ortholog evalue8.2e-18
Seed eggNOG ortholog2880.D8LQT6
EggNOG free text desc.SOUL heme-binding protein
EggNOG OGs28MKZ@1,2QU4S@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size216
Cds size216
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930110.0124867-CDS-H-elongata_contig195266:75..2911622930110.0124867-CDS-H-elongata_contig195266:75..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195266 76..291 -
1691679284.203256-CDS-H-elongata_contig195266:75..2911691679284.203256-CDS-H-elongata_contig195266:75..291Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195266 76..291 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195266.5443.1prot_H-elongata_contig195266.5443.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195266 76..291 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195266.5443.1

>prot_H-elongata_contig195266.5443.1 ID=prot_H-elongata_contig195266.5443.1|Name=mRNA_H-elongata_contig195266.5443.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=72bp
SDLPTPIDERVKLREIPERLYVVRQFSGNMGTGDGHDASAELERANTEKG
VNADGGALGEYVGEDAKYLVAR
back to top

mRNA from alignment at H-elongata_contig195266:76..291-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195266.5443.1 ID=mRNA_H-elongata_contig195266.5443.1|Name=mRNA_H-elongata_contig195266.5443.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=216bp|location=Sequence derived from alignment at H-elongata_contig195266:76..291- (Himanthalia elongata Himel1 dioecious)
AGCGATCTTCCCACCCCCATTGATGAGCGGGTAAAGCTCCGGGAGATTCC
GGAGCGCCTCTACGTCGTGCGCCAGTTCTCCGGGAACATGGGAACCGGCG
ACGGGCACGACGCGAGCGCGGAGCTGGAGAGAGCAAACACGGAAAAGGGG
GTTAACGCGGACGGCGGCGCCCTCGGCGAGTACGTCGGGGAGGACGCGAA
GTACCTCGTGGCGAGG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig195266:76..291-

>mRNA_H-elongata_contig195266.5443.1 ID=mRNA_H-elongata_contig195266.5443.1|Name=mRNA_H-elongata_contig195266.5443.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=432bp|location=Sequence derived from alignment at H-elongata_contig195266:76..291- (Himanthalia elongata Himel1 dioecious)
AGCGATCTTCCCACCCCCATTGATGAGCGGGTAAAGCTCCGGGAGATTCC
GGAGCGCCTCTACGTCGTGCGCCAGTTCTCCGGGAACATGGGAACCGGCG
ACGGGCACGACGCGAGCGCGGAGCTGGAGAGAGCAAACACGGAAAAGGGG
GTTAACGCGGACGGCGGCGCCCTCGGCGAGTACGTCGGGGAGGACGCGAA
GTACCTCGTGGCGAGGAGCGATCTTCCCACCCCCATTGATGAGCGGGTAA
AGCTCCGGGAGATTCCGGAGCGCCTCTACGTCGTGCGCCAGTTCTCCGGG
AACATGGGAACCGGCGACGGGCACGACGCGAGCGCGGAGCTGGAGAGAGC
AAACACGGAAAAGGGGGTTAACGCGGACGGCGGCGCCCTCGGCGAGTACG
TCGGGGAGGACGCGAAGTACCTCGTGGCGAGG
back to top