mRNA_H-elongata_contig195254.5442.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0FAT9_9PHAE (Ribosomal protein L4 n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAT9_9PHAE) HSP 1 Score: 368 bits (945), Expect = 4.540e-128 Identity = 193/208 (92.79%), Postives = 201/208 (96.63%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 624
MSLEKILTFPIKLLTGE+SGDN TLTLKSKELSNTSNYIIHRAYLTQ +NERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPK KLYSNKINRKEWQLGLRNLL+AKQKDI IINNFSS +YKTNDI+KALKVFNIK+FEKTLIIVPKIDEKLLK+TRNIKT+KLIVANNLNI QIL AKNLFITKDSLKT
Sbjct: 1 MSLEKILTFPIKLLTGEESGDNITLTLKSKELSNTSNYIIHRAYLTQLYNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKPKLYSNKINRKEWQLGLRNLLIAKQKDITIINNFSSTNYKTNDIIKALKVFNIKIFEKTLIIVPKIDEKLLKSTRNIKTIKLIVANNLNIKQILLAKNLFITKDSLKT 208
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A0R6LUU1_UNDPI (50S ribosomal protein L4, chloroplastic n=28 Tax=Laminariales TaxID=2886 RepID=A0A0R6LUU1_UNDPI) HSP 1 Score: 313 bits (802), Expect = 2.760e-106 Identity = 159/208 (76.44%), Postives = 184/208 (88.46%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 624
M+L+KILTFP+K+LTGE+SGD TLTLK KE +NT NY+I RAYL QR NERQG ANTLTR+EV+GGGRKPW+QKGTGRARAGS SPLWKGGGVSFGPK K YS+KINRKEWQL LR+LL+AKQKDI I++NF+ ++YKT++I+K L FNI LFE TLI+VPKIDEKLLK+TRNIKT+KLIVANNLN+ QIL AKNL ITKDSLKT
Sbjct: 1 MALQKILTFPVKILTGEESGDEITLTLKLKEATNTINYVIQRAYLAQRSNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNRSPLWKGGGVSFGPKPKFYSSKINRKEWQLSLRSLLIAKQKDITIVDNFNFLEYKTSNIIKVLNTFNINLFENTLIVVPKIDEKLLKSTRNIKTIKLIVANNLNLKQILLAKNLLITKDSLKT 208
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0F722_AKKLU (Ribosomal protein L4 n=1 Tax=Akkesiphycus lubricus TaxID=3022 RepID=A0A8F0F722_AKKLU) HSP 1 Score: 311 bits (796), Expect = 2.260e-105 Identity = 156/208 (75.00%), Postives = 188/208 (90.38%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 624
M L+KILTFPIKLLTG++SGD TLTLKSKE+++ SNY+I RAYLTQR+NERQG ANTLTR+EV+GGGRKPW+QKGTGRARAGS +SPLWKGGGVSFGPK KLYSNKINRKEWQL LR+LL+AKQKDI +I+N + ++YKT++I+K L F+I LF+ TL+IVPKI++KLLK+TRNIKT+K+IVANNLN+ QIL AKNL +TKDSLKT
Sbjct: 1 MILQKILTFPIKLLTGKESGDKITLTLKSKEITDKSNYVIQRAYLTQRYNERQGTANTLTRAEVKGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLIAKQKDITVIDNINPLEYKTDNIIKTLNSFDINLFDNTLLIVPKIEDKLLKSTRNIKTIKVIVANNLNLKQILLAKNLLVTKDSLKT 208
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0FA21_9PHAE (Ribosomal protein L4 n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0FA21_9PHAE) HSP 1 Score: 308 bits (790), Expect = 1.850e-104 Identity = 154/208 (74.04%), Postives = 185/208 (88.94%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLKT 624
M L+K++TFPIK +TG++SGD TL LK K++ T+NY+I RAYLTQR NERQG ANTLTR+EV+GGGRKPWKQKGTGRARAGS +SPLWKGGGVSFGPK KLYSNKINRKEWQL LR+LL+AK+KDI ++ NF+ +DYKTNDI+K L+ FNI LFE TLIIVPKI+EKL+K+T+NIKT+K++VANNLN+ QIL A+NLFITKDSLKT
Sbjct: 1 MILQKLITFPIKSITGKESGDKITLNLKLKDVVTTNNYVIQRAYLTQRLNERQGTANTLTRAEVKGGGRKPWKQKGTGRARAGSNTSPLWKGGGVSFGPKPKLYSNKINRKEWQLSLRSLLVAKEKDITVLENFNLLDYKTNDIIKILQSFNINLFENTLIIVPKIEEKLIKSTKNIKTIKVLVANNLNLKQILLAQNLFITKDSLKT 208
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: D1GJT1_FUCVE (50S ribosomal protein L4, chloroplastic n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJT1_FUCVE) HSP 1 Score: 282 bits (722), Expect = 4.140e-94 Identity = 145/207 (70.05%), Postives = 175/207 (84.54%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
M EK LTFPIKLLTG +S D TLTLK K+ + T+NY+IHRAYLTQR NERQG A+TLTR+EVRGGGRKP +QKG GRARAGS SPLWKGGGVSFGPK KLYSNKINRKEW+LGLR+LL++KQ +III++N + +YKT +I+K LK+FNI L EKTL I+PKI++ LL++T NIKT+KL +A+NLN+ QIL AKNL +TKDSLK
Sbjct: 1 MISEKTLTFPIKLLTGNESKDKITLTLKVKDANETNNYVIHRAYLTQRLNERQGTASTLTRAEVRGGGRKPLRQKGMGRARAGSNRSPLWKGGGVSFGPKPKLYSNKINRKEWKLGLRSLLISKQNNIIIVDNLNITEYKTKNIIKILKIFNINLSEKTLFILPKIEKNLLRSTNNIKTIKLTIASNLNLKQILLAKNLLVTKDSLK 207
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8F0JXJ6_9PHAE (Ribosomal protein L4 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JXJ6_9PHAE) HSP 1 Score: 275 bits (702), Expect = 5.230e-91 Identity = 142/207 (68.60%), Postives = 174/207 (84.06%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
M EKILTFPIK LTG +SG + LK E +NTSNYII RAYLTQR+NERQG ANTLTR+EVRGGGRKPW+QKGTG+ARAGS +SPLW+ GGVSFGPK K YSNKINRKEWQLGLRNLL+ KQ +I+++N+F+ ++++T I ++L+ F+IKLFE TL IV K+++ LLKAT NIK +K+++ANNLNI QILFAKNLFIT+ SLK
Sbjct: 1 MVSEKILTFPIKDLTGAESGKKIKVILKLTEQNNTSNYIIQRAYLTQRYNERQGTANTLTRAEVRGGGRKPWRQKGTGKARAGSNTSPLWRNGGVSFGPKPKEYSNKINRKEWQLGLRNLLIKKQNNIVVLNDFNFVNFRTKTIKQSLETFDIKLFENTLFIVSKLEKDLLKATCNIKNIKVLLANNLNIKQILFAKNLFITETSLK 207
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A141BSP0_9PHAE (50S ribosomal protein L4, chloroplastic n=13 Tax=Sargassum TaxID=3015 RepID=A0A141BSP0_9PHAE) HSP 1 Score: 266 bits (681), Expect = 6.660e-88 Identity = 141/207 (68.12%), Postives = 172/207 (83.09%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
M +KILTF IK L G+ D TTL+LK KEL++T+NY+I RAYLTQR NERQG ANTLTR+EVRGGGRKPW+QKG GRARAGS +SPLWKGGGVSFGPK KLY NKINRKEW+LGLRNLL+AK+K+I +I N S +YKT +I+K L+ F+I L + TLII+P I+++LL++T NIKT+KL +ANNLN+ QIL AKNL + KDSLK
Sbjct: 1 MVSKKILTFTIKSLKGDT--DKTTLSLKVKELNDTNNYVIQRAYLTQRLNERQGTANTLTRAEVRGGGRKPWRQKGMGRARAGSNTSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLVAKEKNITVIENISITEYKTKNIIKILEDFSINLAKDTLIILPTIEKELLRSTSNIKTIKLTLANNLNLKQILLAKNLLVIKDSLK 205
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A8E6D2Q2_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D2Q2_9PHAE) HSP 1 Score: 241 bits (615), Expect = 8.190e-78 Identity = 130/208 (62.50%), Postives = 163/208 (78.37%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSN-TSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
MS EK L F +K L+GE+S D T +TLKSK+ + T NY+IHRA+LTQR NERQG ANTLTRSEVRGGGRKPW+QKGTGRARAGS +SPLWKGGGVSFGPK K++SNKINRKE +L LR+LL AK+++II+ NN + KT+ + K L I L E LI+VPKI+ L K+ +NI+T+++ +ANNLNI QIL AK +FI K+SL+
Sbjct: 1 MSSEKTLIFSVKDLSGEESKDTTAITLKSKKKNEATDNYLIHRAFLTQRHNERQGTANTLTRSEVRGGGRKPWRQKGTGRARAGSNTSPLWKGGGVSFGPKPKIFSNKINRKERKLALRSLLFAKRENIIVANNLNYTTCKTSLLKKNLDTLGIDLRENVLIVVPKIERNLFKSAQNIRTIRVTMANNLNIRQILIAKYIFIAKESLQ 208
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A1L2F1P9_9PHAE (Ribosomal protein L4 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1P9_9PHAE) HSP 1 Score: 233 bits (595), Expect = 7.820e-75 Identity = 128/207 (61.84%), Postives = 155/207 (74.88%), Query Frame = 1
Query: 1 MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIINNFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
M EKILTF IK L G+ D TL+LK K+L+NT+NY+I RAYLTQR NERQG ANTLTR+EVRGGG K W+QKG GRARAGS +SPLWKGGGVSFGPK KLY NKINRKEW+LGLRNLL+AK+ +I ++ N +YKT +I+K L+ F+I L E TLII+P I ++LL++T NIKT+KL +AN I KDSLK
Sbjct: 1 MISEKILTFTIKSLKGDT--DKITLSLKVKDLNNTNNYVIQRAYLTQRINERQGTANTLTRAEVRGGGSKTWRQKGMGRARAGSNNSPLWKGGGVSFGPKPKLYLNKINRKEWKLGLRNLLIAKENNITVVENIRITEYKTKNIIKMLEGFSIDLAEDTLIILPMIQKELLQSTNNIKTIKLTLANXXXXXXXXXXXXXLIMKDSLK 205
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Match: A0A1I9LVD9_9PHAE (50S ribosomal protein L4, chloroplastic n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVD9_9PHAE) HSP 1 Score: 233 bits (595), Expect = 1.460e-74 Identity = 125/205 (60.98%), Postives = 160/205 (78.05%), Query Frame = 1
Query: 10 EKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNERQGNANTLTRSEVRGGGRKPWKQKGTGRARAGSKSSPLWKGGGVSFGPKSKLYSNKINRKEWQLGLRNLLMAKQKDIIIIN-NFSSIDYKTNDIVKALKVFNIKLFEKTLIIVPKIDEKLLKATRNIKTVKLIVANNLNINQILFAKNLFITKDSLK 621
+K+LTFPIK LTGE++ + TLTLK KE T NYII+RAY+ QR NERQG NTLTR+EVRGGGRKPW+QKGTG+AR+GS SPLWKGGGVSFGPK K Y+NKINRKEWQL +R L++ K+ I +I+ +FSS++ KTN ++ KV NI + II+P I++ L+KATRNIKTV L+ A+ LN+ +L + +LFI+KDSLK
Sbjct: 20 DKVLTFPIKFLTGENNKEIATLTLKVKEGQETDNYIIYRAYVAQRTNERQGTRNTLTRAEVRGGGRKPWRQKGTGKARSGSNRSPLWKGGGVSFGPKPKTYTNKINRKEWQLAIRALILLKEPIITVIDYDFSSLENKTNIFIQLFKVCNIGFSKNITIILPNIEDNLVKATRNIKTVTLMRADTLNLITLLGSDHLFISKDSLK 224 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195254.5442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig195254.5442.1 >prot_H-elongata_contig195254.5442.1 ID=prot_H-elongata_contig195254.5442.1|Name=mRNA_H-elongata_contig195254.5442.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=208bp MSLEKILTFPIKLLTGEDSGDNTTLTLKSKELSNTSNYIIHRAYLTQRFNback to top mRNA from alignment at H-elongata_contig195254:527..1150+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig195254.5442.1 ID=mRNA_H-elongata_contig195254.5442.1|Name=mRNA_H-elongata_contig195254.5442.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=624bp|location=Sequence derived from alignment at H-elongata_contig195254:527..1150+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig195254:527..1150+ >mRNA_H-elongata_contig195254.5442.1 ID=mRNA_H-elongata_contig195254.5442.1|Name=mRNA_H-elongata_contig195254.5442.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1248bp|location=Sequence derived from alignment at H-elongata_contig195254:527..1150+ (Himanthalia elongata Himel1 dioecious)back to top |