mRNA_H-elongata_contig195096.5437.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195096.5437.1
Unique NamemRNA_H-elongata_contig195096.5437.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: D7FLC9_ECTSI (6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLC9_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 1.330e-34
Identity = 63/70 (90.00%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GDI+VD GNEWFPNSQRRAKEL  K I+FVGMGISGGEEGARNGPSLMPGGPKEAFDAL PIITKCAAQV
Sbjct:  105 GDILVDCGNEWFPNSQRRAKELEPKKIMFVGMGISGGEEGARNGPSLMPGGPKEAFDALAPIITKCAAQV 174          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: B7ZGN3_9PHAE (6-phosphogluconate dehydrogenase, decarboxylating n=3 Tax=Laminaria digitata TaxID=80365 RepID=B7ZGN3_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.730e-34
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GDI+VDGGNEWFPNSQRRAKEL  K I+FVGMG+SGGEEGARNGPSLMPGGP+EA+DAL PII+KCAAQV
Sbjct:  100 GDILVDGGNEWFPNSQRRAKELEPKKIMFVGMGVSGGEEGARNGPSLMPGGPREAYDALSPIISKCAAQV 169          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A7S1UZH2_9STRA (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UZH2_9STRA)

HSP 1 Score: 121 bits (303), Expect = 3.040e-34
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1
Query:    7 IIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            IIVDGGNEWFPN+ RR +EL  K ILFVGMGISGGEEGAR GPSLMPGGPKEA+DALEPIITK AAQV
Sbjct:    1 IIVDGGNEWFPNTIRRGEELAPKGILFVGMGISGGEEGARKGPSLMPGGPKEAYDALEPIITKAAAQV 68          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A7S2G4S9_9STRA (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G4S9_9STRA)

HSP 1 Score: 122 bits (307), Expect = 3.170e-34
Identity = 54/70 (77.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GD+I+DGGNEW+PNSQRRA EL  K I+F+GMG+SGGEEGARNGPSLMPGGPK A+D +EPI+ KCAAQV
Sbjct:   29 GDLIIDGGNEWYPNSQRRATELEAKKIMFMGMGVSGGEEGARNGPSLMPGGPKAAYDLMEPILQKCAAQV 98          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: H3G9Q8_PHYRM (6-phosphogluconate dehydrogenase, decarboxylating n=27 Tax=Peronosporaceae TaxID=4777 RepID=H3G9Q8_PHYRM)

HSP 1 Score: 129 bits (323), Expect = 1.240e-33
Identity = 61/70 (87.14%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GDIIVDGGNEWFPNS RRA EL  K I FVGMG+SGGEEGARNGPSLMPGGP+EA+DALEPIITKCAAQV
Sbjct:   98 GDIIVDGGNEWFPNSVRRASELEPKGIHFVGMGVSGGEEGARNGPSLMPGGPREAYDALEPIITKCAAQV 167          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: F0W5J1_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=2 Tax=Albugo TaxID=65356 RepID=F0W5J1_9STRA)

HSP 1 Score: 128 bits (322), Expect = 2.400e-33
Identity = 60/70 (85.71%), Postives = 65/70 (92.86%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GDIIVDGGNEWFPNS RRA+EL  + I+FVGMGISGGEEGARNGPSLMPGGP+EAFDALEPI+ KCAAQV
Sbjct:  132 GDIIVDGGNEWFPNSIRRAEELKTRGIMFVGMGISGGEEGARNGPSLMPGGPREAFDALEPILVKCAAQV 201          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A6A5AM45_9STRA (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AM45_9STRA)

HSP 1 Score: 127 bits (319), Expect = 2.660e-33
Identity = 61/70 (87.14%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GDIIVDGGNEWFPNS RRAKEL  K ILFVGMGISGGEEGAR GPSLMPGGP+ AFDALEPI+ KCAAQV
Sbjct:   99 GDIIVDGGNEWFPNSLRRAKELEPKGILFVGMGISGGEEGARKGPSLMPGGPRAAFDALEPILIKCAAQV 168          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A7S3XUE3_HETAK (6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUE3_HETAK)

HSP 1 Score: 127 bits (319), Expect = 3.930e-33
Identity = 58/70 (82.86%), Postives = 64/70 (91.43%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GD+I+DGGNEWFPNS RRAKEL +  I+FVGMGISGGEEGARNGPSLMPGGP+EA+D LEPIIT CAAQV
Sbjct:   84 GDVIIDGGNEWFPNSVRRAKELEDSGIMFVGMGISGGEEGARNGPSLMPGGPREAYDLLEPIITACAAQV 153          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A6V2LK55_9STRA (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2LK55_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.590e-33
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GD+I+DGGNEWFPNS RRA+EL  K I F+GMGISGGEEGARNGPSLMPGGPKE++D + PI+TKCAAQV
Sbjct:   95 GDLIIDGGNEWFPNSVRRAEELKPKGINFIGMGISGGEEGARNGPSLMPGGPKESYDIIAPILTKCAAQV 164          
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Match: A0A812ZJK3_SYMMI (Phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating) (Fragment) n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812ZJK3_SYMMI)

HSP 1 Score: 122 bits (306), Expect = 5.450e-33
Identity = 55/70 (78.57%), Postives = 63/70 (90.00%), Query Frame = 1
Query:    1 GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPGGPKEAFDALEPIITKCAAQV 210
            GD+I+DGGNEWFPNS RR +EL EK I FVGMGISGGEEGARNGPSLMPGGP+EAFD +EP+++ CAAQV
Sbjct:   49 GDVIIDGGNEWFPNSVRRFEELEEKGIHFVGMGISGGEEGARNGPSLMPGGPREAFDLIEPVLSACAAQV 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195096.5437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLC9_ECTSI1.330e-3490.006-phosphogluconate dehydrogenase, decarboxylating ... [more]
B7ZGN3_9PHAE1.730e-3485.716-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A7S1UZH2_9STRA3.040e-3485.29Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]
A0A7S2G4S9_9STRA3.170e-3477.14Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]
H3G9Q8_PHYRM1.240e-3387.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
F0W5J1_9STRA2.400e-3385.716-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A6A5AM45_9STRA2.660e-3387.146-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A7S3XUE3_HETAK3.930e-3382.866-phosphogluconate dehydrogenase, decarboxylating ... [more]
A0A6V2LK55_9STRA4.590e-3378.57Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]
A0A812ZJK3_SYMMI5.450e-3378.57Phosphogluconate dehydrogenase (NADP(+)-dependent,... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195096contigH-elongata_contig195096:595..813 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.7
Seed ortholog evalue3.6e-29
Seed eggNOG ortholog2880.D7FLC9
KEGG rclassRC00001,RC00539
KEGG koko:K00033
KEGG ReactionR01528,R10221
KEGG Pathwayko00030,ko00480,ko01100,ko01110,ko01120,ko01130,ko01200,map00030,map00480,map01100,map01110,map01120,map01130,map01200
KEGG ModuleM00004,M00006
EggNOG free text desc.D-gluconate metabolic process
EggNOG OGsCOG0362@1,KOG2653@2759
Ec32 ortholog description6-phosphogluconate dehydrogenase, C-terminal-like
Ec32 orthologEc-12_007690.1
EC1.1.1.343,1.1.1.44
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.4085453-CDS-H-elongata_contig195096:594..8131622930109.4085453-CDS-H-elongata_contig195096:594..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195096 595..813 +
1691679283.9491007-CDS-H-elongata_contig195096:594..8131691679283.9491007-CDS-H-elongata_contig195096:594..813Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195096 595..813 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195096.5437.1prot_H-elongata_contig195096.5437.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195096 595..813 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195096.5437.1

>prot_H-elongata_contig195096.5437.1 ID=prot_H-elongata_contig195096.5437.1|Name=mRNA_H-elongata_contig195096.5437.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
GDIIVDGGNEWFPNSQRRAKELGEKNILFVGMGISGGEEGARNGPSLMPG
GPKEAFDALEPIITKCAAQVRP*
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mRNA from alignment at H-elongata_contig195096:595..813+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195096.5437.1 ID=mRNA_H-elongata_contig195096.5437.1|Name=mRNA_H-elongata_contig195096.5437.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=219bp|location=Sequence derived from alignment at H-elongata_contig195096:595..813+ (Himanthalia elongata Himel1 dioecious)
GGAGATATCATCGTAGATGGGGGCAATGAGTGGTTCCCCAACTCTCAGCG GCGCGCGAAGGAACTAGGGGAAAAAAACATATTGTTCGTTGGTATGGGCA TCTCCGGTGGGGAAGAAGGCGCGCGCAATGGGCCTTCTCTCATGCCCGGG GGACCCAAGGAGGCGTTTGATGCGCTCGAGCCTATCATCACCAAGTGCGC CGCTCAGGTGCGACCTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig195096:595..813+

>mRNA_H-elongata_contig195096.5437.1 ID=mRNA_H-elongata_contig195096.5437.1|Name=mRNA_H-elongata_contig195096.5437.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig195096:595..813+ (Himanthalia elongata Himel1 dioecious)
GGAGATATCATCGTAGATGGGGGCAATGAGTGGTTCCCCAACTCTCAGCG
GCGCGCGAAGGAACTAGGGGAAAAAAACATATTGTTCGTTGGTATGGGCA
TCTCCGGTGGGGAAGAAGGCGCGCGCAATGGGCCTTCTCTCATGCCCGGG
GGACCCAAGGAGGCGTTTGATGCGCTCGAGCCTATCATCACCAAGTGCGC
CGCTCAGGTGCGACCTTGAGGAGATATCATCGTAGATGGGGGCAATGAGT
GGTTCCCCAACTCTCAGCGGCGCGCGAAGGAACTAGGGGAAAAAAACATA
TTGTTCGTTGGTATGGGCATCTCCGGTGGGGAAGAAGGCGCGCGCAATGG
GCCTTCTCTCATGCCCGGGGGACCCAAGGAGGCGTTTGATGCGCTCGAGC
CTATCATCACCAAGTGCGCCGCTCAGGTGCGACCTTGA
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