mRNA_H-elongata_contig195080.5436.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195080.5436.1
Unique NamemRNA_H-elongata_contig195080.5436.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A6H5K446_9PHAE (J domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K446_9PHAE)

HSP 1 Score: 95.5 bits (236), Expect = 2.470e-21
Identity = 42/69 (60.87%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:   13 RAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTEGKA 219
            R+    AV K C+W++QLVF+IIK+D  +DWNWW+VFLPTW+VLF  L GY +D SLA  LS+G EGKA
Sbjct:  285 RSEARTAVAKDCIWMLQLVFLIIKLDGDVDWNWWLVFLPTWIVLFGQLVGYYVDYSLARNLSAGIEGKA 353
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BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: D8LBY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY5_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 1.700e-7
Identity = 24/64 (37.50%), Postives = 44/64 (68.75%), Query Frame = 1 
Query:   19 APSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTE 210
            A  KA+ +  +  +Q++F++ ++D +++WNWWVVF+PTW++    L  +C + +LAM L+ G E
Sbjct:  194 AAIKAMGEAAMLFLQVLFLMWRLDGEVNWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLE 257
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BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A6H5JKW2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW2_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.700e-7
Identity = 25/68 (36.76%), Postives = 44/68 (64.71%), Query Frame = 1 
Query:    7 GCRAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLSSGTE 210
            G   A  KA+ +  +  +Q++F++ ++D ++ WNWWVVF+PTW++    L  +C + +LAM L+ G E
Sbjct:  110 GRVVAAIKAMGEAAMLFLQVLFLMWRLDGEVAWNWWVVFVPTWLLHAGQLFTWCTNQALAMSLARGLE 177
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BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A1I7YS82_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7YS82_9BILA)

HSP 1 Score: 50.1 bits (118), Expect = 2.440e-5
Identity = 22/48 (45.83%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   55 IVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLS 198
            +VQ VF+ +K+D  +DWNW +VF+P W+VL + L      V LA+ LS
Sbjct:   66 VVQFVFLALKLDNVVDWNWAIVFIPAWMVLAVCLIAVVYAVILAILLS 113
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BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Match: A0A4U5M6V3_STECR (Uncharacterized protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5M6V3_STECR)

HSP 1 Score: 49.7 bits (117), Expect = 3.570e-5
Identity = 21/48 (43.75%), Postives = 32/48 (66.67%), Query Frame = 1 
Query:   55 IVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFIHLAGYCIDVSLAMRLS 198
            ++Q VF+ +K+D  +DWNW +VF+P W+VL + L      V LA+ LS
Sbjct:  161 VIQFVFLALKLDNVVDWNWAIVFIPAWMVLAVCLIAVVYAVILAILLS 208
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195080.5436.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K446_9PHAE2.470e-2160.87J domain-containing protein n=2 Tax=Ectocarpus Tax... [more]
D8LBY5_ECTSI1.700e-737.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JKW2_9PHAE2.700e-736.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I7YS82_9BILA2.440e-545.83Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
A0A4U5M6V3_STECR3.570e-543.75Uncharacterized protein n=1 Tax=Steinernema carpoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195080contigH-elongata_contig195080:286..712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue5e-15
Seed eggNOG ortholog2880.D7G6F0
KEGG koko:K10752
KEGG Pathwayko04218,map04218
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Hectar predicted targeting categorysignal anchor
Exons2
Model size220
Cds size219
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.3628566-CDS-H-elongata_contig195080:285..4081622930109.3628566-CDS-H-elongata_contig195080:285..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195080 286..408 -
1691679283.925118-CDS-H-elongata_contig195080:285..4081691679283.925118-CDS-H-elongata_contig195080:285..408Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195080 286..408 -
1622930109.3781254-CDS-H-elongata_contig195080:616..7121622930109.3781254-CDS-H-elongata_contig195080:616..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195080 617..712 -
1691679283.9388819-CDS-H-elongata_contig195080:616..7121691679283.9388819-CDS-H-elongata_contig195080:616..712Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195080 617..712 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195080.5436.1prot_H-elongata_contig195080.5436.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195080 286..712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195080.5436.1

>prot_H-elongata_contig195080.5436.1 ID=prot_H-elongata_contig195080.5436.1|Name=mRNA_H-elongata_contig195080.5436.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=73bp
MCGCRAAPSKAVVKYCLWIVQLVFIIIKVDEQIDWNWWVVFLPTWVVLFI
HLAGYCIDVSLAMRLSSGTEGKA
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mRNA from alignment at H-elongata_contig195080:286..712-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195080.5436.1 ID=mRNA_H-elongata_contig195080.5436.1|Name=mRNA_H-elongata_contig195080.5436.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=427bp|location=Sequence derived from alignment at H-elongata_contig195080:286..712- (Himanthalia elongata Himel1 dioecious)
ATGTGTGGATGCCGTGCTGCGCCGTCCAAGGCTGTGGTCAAATATTGCCT
TTGGATCGTCCAGTTGGTGTTCATCATCATCAAGGTTGACGAGCAGGTGA
CTTGCTTCTGGGCTTGGATGATGGGGCGAGTAGCGGGATTTAAATGGGGG
GGGGGGATCTACCACCCTACCCTGCCTCGCAATGTTTTTGCTCTTTTTTT
CTTTTTTTCACCCACGTAATAAAAAAAATCCTCCTTTCTTGTCCTTCTGC
TTTTTGATTGATTGATTGTTTGTCTTTATTATTTTTAAAATCTCCAAAAA
CAAGATCGACTGGAACTGGTGGGTTGTATTTCTCCCCACCTGGGTGGTTC
TGTTCATCCACCTTGCCGGCTACTGCATCGACGTTTCCTTGGCCATGAGG
CTTTCATCCGGAACGGAAGGAAAAGCA
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Coding sequence (CDS) from alignment at H-elongata_contig195080:286..712-

>mRNA_H-elongata_contig195080.5436.1 ID=mRNA_H-elongata_contig195080.5436.1|Name=mRNA_H-elongata_contig195080.5436.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=438bp|location=Sequence derived from alignment at H-elongata_contig195080:286..712- (Himanthalia elongata Himel1 dioecious)
ATGTGTGGATGCCGTGCTGCGCCGTCCAAGGCTGTGGTCAAATATTGCCT
TTGGATCGTCCAGTTGGTGTTCATCATCATCAAGGTTGACGAGCAGATGT
GTGGATGCCGTGCTGCGCCGTCCAAGGCTGTGGTCAAATATTGCCTTTGG
ATCGTCCAGTTGGTGTTCATCATCATCAAGGTTGACGAGCAGATCGACTG
GAACTGGTGGGTTGTATTTCTCCCCACCTGGGTGGTTCTGTTCATCCACC
TTGCCGGCTACTGCATCGACGTTTCCTTGGCCATGAGGCTTTCATCCGGA
ACGGAAGGAAAAGCAATCGACTGGAACTGGTGGGTTGTATTTCTCCCCAC
CTGGGTGGTTCTGTTCATCCACCTTGCCGGCTACTGCATCGACGTTTCCT
TGGCCATGAGGCTTTCATCCGGAACGGAAGGAAAAGCA
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