mRNA_H-elongata_contig195074.5434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195074.5434.1
Unique NamemRNA_H-elongata_contig195074.5434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195074.5434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195074contigH-elongata_contig195074:53..727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size675
Cds size345
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.239997-UTR-H-elongata_contig195074:52..3821622930109.239997-UTR-H-elongata_contig195074:52..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195074 53..382 +
1691679283.8869534-UTR-H-elongata_contig195074:52..3821691679283.8869534-UTR-H-elongata_contig195074:52..382Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig195074 53..382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.2556376-CDS-H-elongata_contig195074:382..7271622930109.2556376-CDS-H-elongata_contig195074:382..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195074 383..727 +
1691679283.9013863-CDS-H-elongata_contig195074:382..7271691679283.9013863-CDS-H-elongata_contig195074:382..727Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195074 383..727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195074.5434.1prot_H-elongata_contig195074.5434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195074 383..727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195074.5434.1

>prot_H-elongata_contig195074.5434.1 ID=prot_H-elongata_contig195074.5434.1|Name=mRNA_H-elongata_contig195074.5434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=115bp
MNHLLLLCRHEEGLPAGHPSTCCRVLSRLSPPPFFYHAKACHALQRTCSA
FCNHEASNDGDTAVETVDAAAFSIARIPTRLRPHNHRPPLRPSLPSCLQR
SRERHRRPWDAKAA*
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mRNA from alignment at H-elongata_contig195074:53..727+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195074.5434.1 ID=mRNA_H-elongata_contig195074.5434.1|Name=mRNA_H-elongata_contig195074.5434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=675bp|location=Sequence derived from alignment at H-elongata_contig195074:53..727+ (Himanthalia elongata Himel1 dioecious)
TATCCAAACGGCTTCGGCCCTCGGTGCGCGATCTCTCCTCTTTTTCTTCG
TCGATCGCGGACTCAAGCCACGCAACGGTTGCCCACCGGTATCGGCTCCA
CTTCTGCCCAGTTGCTGTGAGGCGCCATGGATGCTGCCGACGATTTATTG
GGACACCAAAAGTGGGGAAGCATTGGCTTTCTCCCCCTCCCCTTCTCAGG
TCTCGCACCTAAATACCAAACTATTTAGTTGCTGTTACTGTATTCGACCG
TTGACTGAATTTTCAAAAACATACGCTGATCTATACGCATACCTTGGAAA
TCAAATCTCGCATCGTGTTGTTTGTCACCCATGAACCATCTCCTCCTCCT
ATGCCGCCACGAGGAAGGGCTGCCGGCGGGGCATCCGAGTACCTGCTGTC
GCGTACTATCTCGCCTTTCCCCCCCCCCTTTTTTTTATCATGCAAAAGCC
TGCCACGCGCTGCAAAGGACCTGCTCGGCCTTCTGCAACCACGAAGCGAG
CAACGATGGCGATACTGCTGTAGAAACTGTCGACGCCGCTGCATTCTCGA
TCGCGCGAATACCAACAAGGCTAAGACCGCACAATCATCGTCCGCCCCTA
CGCCCATCTCTTCCCAGCTGCCTGCAGCGCTCTCGGGAGAGGCACCGCCG
CCCCTGGGACGCGAAAGCGGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig195074:53..727+

>mRNA_H-elongata_contig195074.5434.1 ID=mRNA_H-elongata_contig195074.5434.1|Name=mRNA_H-elongata_contig195074.5434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=690bp|location=Sequence derived from alignment at H-elongata_contig195074:53..727+ (Himanthalia elongata Himel1 dioecious)
ATGAACCATCTCCTCCTCCTATGCCGCCACGAGGAAGGGCTGCCGGCGGG
GCATCCGAGTACCTGCTGTCGCGTACTATCTCGCCTTTCCCCCCCCCCTT
TTTTTTATCATGCAAAAGCCTGCCACGCGCTGCAAAGGACCTGCTCGGCC
TTCTGCAACCACGAAGCGAGCAACGATGGCGATACTGCTGTAGAAACTGT
CGACGCCGCTGCATTCTCGATCGCGCGAATACCAACAAGGCTAAGACCGC
ACAATCATCGTCCGCCCCTACGCCCATCTCTTCCCAGCTGCCTGCAGCGC
TCTCGGGAGAGGCACCGCCGCCCCTGGGACGCGAAAGCGGCATGAATGAA
CCATCTCCTCCTCCTATGCCGCCACGAGGAAGGGCTGCCGGCGGGGCATC
CGAGTACCTGCTGTCGCGTACTATCTCGCCTTTCCCCCCCCCCTTTTTTT
TATCATGCAAAAGCCTGCCACGCGCTGCAAAGGACCTGCTCGGCCTTCTG
CAACCACGAAGCGAGCAACGATGGCGATACTGCTGTAGAAACTGTCGACG
CCGCTGCATTCTCGATCGCGCGAATACCAACAAGGCTAAGACCGCACAAT
CATCGTCCGCCCCTACGCCCATCTCTTCCCAGCTGCCTGCAGCGCTCTCG
GGAGAGGCACCGCCGCCCCTGGGACGCGAAAGCGGCATGA
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