mRNA_H-elongata_contig19506.5433.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19506.5433.1
Unique NamemRNA_H-elongata_contig19506.5433.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D7G339_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G339_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.430e-124
Identity = 181/269 (67.29%), Postives = 216/269 (80.30%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSF----VNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
            ++FD+V+VYGN+Y+SDIHH +FG++TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VYNNGYHGIIASKRCN VSIQGNEVYGG + SAGIFLHRSSD+A VK    HDNGDAG+A LESFNA VS+N FENNKYG+RFSVG   N F++N I N+ +YN Y+Y G+D+PDVV SGR QNNVFS+N   G+ E IK+K++DG QF DN F     +   +RFDN+T  +M GN+GLD  E ELKV N ACFD  +DSG+EPVC
Sbjct:  240 EVFDDVNVYGNVYDSDIHHMNFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRFSVGCADNVFSNNTISNNAEYNAYSYLGTDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDNATENLMQGNTGLDDGEFELKVDNDACFDGEADSGYEPVC 508          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D7FXE4_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE4_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 1.620e-124
Identity = 182/269 (67.66%), Postives = 215/269 (79.93%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSF----VNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
            +IFD+V+VYGN+Y+SDIHH  FG++TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VYNNGYHGIIASKRCN VSIQGNEVYGG + SAGIFLHRSSD+A VK    HDNGDAG+A LESFNA VS+N FENNKYG+R SVG   N F++N+I N++KYN YTY GSD+PDVV SGR QNNVFS+N   G+ E IK+K++DG QF DN F     +   +RFD++   VM GN+GLD  + ELKV N +CFD  SDSG+EPVC
Sbjct:  244 EIFDDVNVYGNMYDSDIHHLRFGLYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYNNGYHGIIASKRCNGVSIQGNEVYGGAETSAGIFLHRSSDDAIVKGNYVHDNGDAGLAMLESFNADVSENTFENNKYGVRMSVGCADNVFSENIISNNSKYNAYTYLGSDEPDVVSSGRSQNNVFSQNSFSGAEETIKIKEADGTQFLDNVFEVGDADGLVVRFDDAMNSVMQGNTGLDEGDFELKVTNDSCFDGESDSGYEPVC 512          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAK0_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK0_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 9.610e-123
Identity = 177/267 (66.29%), Postives = 210/267 (78.65%), Query Frame = 1
Query:   22 ILKQIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
            I  ++F++V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN GYGFDPHDDSD+LT+HDN VY+NGYHGIIASKRCN VSIQGNEVYGG   SAGIFL+RSSD+A VK    HDNGDAG+A +ESFNA VSDNIFENNKYG+R SVG G N F+ NVI  STKYN Y+Y G+D PDVV SGR ++N F EN IVG  E +K+  +DG +F  NSF +  TIRFD++   VM GN+GL   + +LKV NGA FD  +D GFEP+
Sbjct:    1 IRHEVFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNKGYGFDPHDDSDFLTVHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGASSSAGIFLYRSSDDAVVKGNYVHDNGDAGLAMMESFNADVSDNIFENNKYGVRISVGCGRNIFSKNVISGSTKYNAYSYLGTDAPDVVKSGRSKDNCFQENTIVGGIETLKIMDADGTEFIGNSFEDAVTIRFDDAARTVMSGNTGLT--DTKLKVHNGASFDKRADYGFEPI 265          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ8_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ8_9PHAE)

HSP 1 Score: 360 bits (923), Expect = 9.430e-120
Identity = 178/264 (67.42%), Postives = 210/264 (79.55%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
            ++FD+V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN V+NNGYHGIIASKRCN VSIQGNEVYGG   SAGIFLHRSSDN  VK    HDNGDAG+A LESFNA VSDN FENNKYG+R SVG G N F+ NVI  S ++N ++Y G+D P+VVDSGR Q+NVF EN I+G  E I LK++DG QF DN+F +   IRF ++T  +M GN+GL   +  LKV  GA FD+SSD GFEP+
Sbjct:  211 ELFDDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVWNNGYHGIIASKRCNGVSIQGNEVYGGSSGSAGIFLHRSSDNGIVKGNYVHDNGDAGLAMLESFNADVSDNTFENNKYGVRLSVGCGRNIFSKNVITGSAEFNTFSYLGADKPEVVDSGRSQDNVFMENNIIGGVESILLKEADGTQFIDNTFKDAAAIRFVDATKTLMSGNTGLA--DSTLKVDRGATFDESSDHGFEPI 472          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ7_9PHAE (Mannuronan C-5-epimerase n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ7_9PHAE)

HSP 1 Score: 350 bits (897), Expect = 1.790e-115
Identity = 180/263 (68.44%), Postives = 210/263 (79.85%), Query Frame = 1
Query:   34 IFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPV 822
            +F++V+VYGNIY+SDIHHN+FGV+TYGHQQGDWR N M DN+GYGFDPHDDSD+LTIHDN VY+NGYHGIIASKRCN VSIQGNEVYGG   SAGIFLHR        XXXX    DAG+A +ESFNA VSDNIFENNKYGIRFSVGSG N F +NVI  ST+Y+ Y+Y GSD PDVVDSGR Q+NVF EN I+G  E IKL  +DG QF DN+F + TTIRF+++   +M GN GL++ +  LKV+NGA FD SSD GFEP+
Sbjct:  238 LFEDVNVYGNIYDSDIHHNNFGVYTYGHQQGDWRRNKMHDNSGYGFDPHDDSDFLTIHDNEVYDNGYHGIIASKRCNGVSIQGNEVYGGATSSAGIFLHRXXXXXXXXXXXXXXXXDAGLAMMESFNADVSDNIFENNKYGIRFSVGSGRNVFFNNVISGSTRYSTYSYLGSDAPDVVDSGRSQDNVFQENNIIGGVESIKLLDADGTQFIDNTFEDATTIRFNDAKKTLMSGNIGLNMSK--LKVVNGASFDASSDYGFEPI 498          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAJ9_9PHAE (Mannuronan C-5-epimerase (Fragment) n=1 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAJ9_9PHAE)

HSP 1 Score: 333 bits (854), Expect = 2.210e-111
Identity = 167/265 (63.02%), Postives = 198/265 (74.72%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
            ++FDEV+VYGNIY+SDIHHNHFGV+TYGH+QGDWR N M  N  YGFDPHDDSD+LTIHDN VYNNG HGIIASKRCN           G   S GIFLHRSSD+A VK   X DNGDAGMA +ESFNA VS+N FE+NKYG+R SVG   N F+ NVI +S++YNVYTYEGSDDP VVDSGR Q+N+FS+N I G  E IKL  +DG +F DN+F +  T+RF+++   +M GN+GL      LKV  GACFD  SDS ++PVC
Sbjct:   63 EVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNYXXDNGDAGMALMESFNADVSNNKFEDNKYGVRMSVGCADNVFSKNVISDSSEYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKSAKTVRFEDAQDTIMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 325          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: A0A6H5K1D5_9PHAE (MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1D5_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 7.820e-102
Identity = 150/261 (57.47%), Postives = 196/261 (75.10%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGF 813
            +IFD+V+VYGNIY+S++HH +F V+TYGHQQGDWR N++  N+GYG+DPHDDSD+LTIHDNVVY+N +HGIIASKRCN+VSIQGN VYGG D SAGIFLHRSSD A VK    + NGDAGMA LES NA +S NIFE NKYGIR SVG   NF  +N + N+++Y +YTY+GSD  +V  +GR Q+N+F  N +VG  + IKLK+SDG +  +N F     + F N+T  V+ GN GL+ D  E++++  ACF ++ ++  
Sbjct:   29 EIFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNVVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVYNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGVVEFSNTTENVVTGNVGLE-DATEVELVEPACFAETDEASL 288          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: A8CEP1_SACJA (Mannuronan C-5 epimerase n=1 Tax=Saccharina japonica TaxID=88149 RepID=A8CEP1_SACJA)

HSP 1 Score: 310 bits (795), Expect = 4.290e-100
Identity = 159/265 (60.00%), Postives = 188/265 (70.94%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
            ++FD V+VYGNIY+SDIHHN+FGV+TYGH+QGDWR N M  NT YGFDPHDDSD+LTIHDN VYNNG HGIIASKRCN           G   S GIFLHRSSD+A VK    HDNGDAGMA +E+FNA VS+N FE+NKYGIR SVG   N F+ N I  S+KYNVYTY+GSD P VVDSGR Q+         G  E +KL  +DG +F DN+F +  TIRF++    +M GNSGL      LKV +G+CFD  SDS ++PVC
Sbjct:  237 EVFDAVNVYGNIYDSDIHHNYFGVYTYGHEQGDWRRNKMHHNTEYGFDPHDDSDFLTIHDNEVYNNGNHGIIASKRCNGXXXXXXXXXXGAAKSVGIFLHRSSDDAIVKDNYVHDNGDAGMALMETFNADVSNNKFEDNKYGIRMSVGCADNVFSKNDITGSSKYNVYTYQGSDAPWVVDSGRSQDXXXXXXXXSGGQETVKLTMADGTEFIDNTFKSAKTIRFEDCQGTLMSGNSGLG--GASLKVTDGSCFDKKSDSAYKPVC 499          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: D8LD45_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD45_ECTSI)

HSP 1 Score: 306 bits (785), Expect = 1.810e-97
Identity = 149/261 (57.09%), Postives = 196/261 (75.10%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGF 813
            ++FD+V+VYGNIY+S++HH +F V+TYGHQQGDWR N +  N+GYG+DPHDDSD+LTIHDNVVY+N +HGIIASKRCN+VSIQGN VYGG D SAGIFLHRSSD A VK    + NGDAGMA LES NA +S NIFE NKYGIR SVG   NF ++N + N+++Y +YTY+GSD  +V  +GR Q+N+F  N +VG  + IKLK+SDG +  +N F     + F N+T  V+ GN GL+ D  E++++  ACF ++ ++  
Sbjct:  329 EVFDQVNVYGNIYDSELHHMNFAVYTYGHQQGDWRRNTVHSNSGYGYDPHDDSDFLTIHDNVVYDNNWHGIIASKRCNNVSIQGNIVYGGNDTSAGIFLHRSSDYAVVKDNHCYGNGDAGMAMLESSNAEISGNIFEGNKYGIRMSVGCRDNFVSNNTMTNTSQYAIYTYQGSDPAEVQPTGRSQDNIFDSNTVVGGPQAIKLKESDGTRITNNVFYEPGLVEFSNTTENVVTGNVGLE-DATEVELVEPACFAETDEASL 588          
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Match: Q7XAK2_9PHAE (Mannuronan C-5-epimerase n=2 Tax=Laminaria digitata TaxID=80365 RepID=Q7XAK2_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 1.370e-93
Identity = 154/265 (58.11%), Postives = 182/265 (68.68%), Query Frame = 1
Query:   31 QIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMRDNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGGGDISAGIFLHRSSDNATVKXXXXHDNGDAGMAFLESFNATVSDNIFENNKYGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFSENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDLDEVELKVINGACFDDSSDSGFEPVC 825
            ++FDEV+VYGNIY+SDIHHNHFGV+TYGH+QGDWR N M  N  YGFDPHDDSD+LTIHDN V                          G   S GIFLHRSSD+A VK  XX  NGDAGMA +ESFNA VS+N FE+NKYG+R SVG   N F+ NVI +S+KYNVYTYEGSDDP VVDSGR Q+N+FS+N I G  E IKL  +DG +F DN+F    T RF+++   +M GN+GL      LKV  GACFD  SDS ++PVC
Sbjct:  240 EVFDEVNVYGNIYDSDIHHNHFGVYTYGHEQGDWRRNKMHHNREYGFDPHDDSDFLTIHDNKVXXXXXXXXXXXXXXXXXXXXXXXXXXGSSKSVGIFLHRSSDDAIVKDNXXXXNGDAGMALMESFNADVSNNKFEDNKYGVRLSVGCADNVFSKNVISDSSKYNVYTYEGSDDPWVVDSGRSQDNIFSDNTITGGDESIKLTMADGTEFIDNTFKRAKTARFEDAETTLMSGNTGLG--SATLKVSKGACFDKKSDSDYKPVC 502          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19506.5433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G339_ECTSI1.430e-12467.29Mannuronan C-5-epimerase n=2 Tax=Ectocarpus silicu... [more]
D7FXE4_ECTSI1.620e-12467.66Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK0_9PHAE9.610e-12366.29Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ8_9PHAE9.430e-12067.42Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
Q7XAJ7_9PHAE1.790e-11568.44Mannuronan C-5-epimerase n=1 Tax=Laminaria digitat... [more]
Q7XAJ9_9PHAE2.210e-11163.02Mannuronan C-5-epimerase (Fragment) n=1 Tax=Lamina... [more]
A0A6H5K1D5_9PHAE7.820e-10257.47MEP4b protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A8CEP1_SACJA4.290e-10060.00Mannuronan C-5 epimerase n=1 Tax=Saccharina japoni... [more]
D8LD45_ECTSI1.810e-9757.09Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
Q7XAK2_9PHAE1.370e-9358.11Mannuronan C-5-epimerase n=2 Tax=Laminaria digitat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19506contigH-elongata_contig19506:3375..7035 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score242.7
Seed ortholog evalue2.1e-61
Seed eggNOG ortholog2880.D7G8D9
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons4
Model size834
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19506.5433.1prot_H-elongata_contig19506.5433.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19506 3375..7035 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.1354814-CDS-H-elongata_contig19506:3374..36871622930109.1354814-CDS-H-elongata_contig19506:3374..3687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 3375..3687 -
1691679283.8456726-CDS-H-elongata_contig19506:3374..36871691679283.8456726-CDS-H-elongata_contig19506:3374..3687Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 3375..3687 -
1622930109.1545897-CDS-H-elongata_contig19506:4209..43721622930109.1545897-CDS-H-elongata_contig19506:4209..4372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 4210..4372 -
1691679283.8582292-CDS-H-elongata_contig19506:4209..43721691679283.8582292-CDS-H-elongata_contig19506:4209..4372Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 4210..4372 -
1622930109.172134-CDS-H-elongata_contig19506:6342..64211622930109.172134-CDS-H-elongata_contig19506:6342..6421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 6343..6421 -
1691679283.8685963-CDS-H-elongata_contig19506:6342..64211691679283.8685963-CDS-H-elongata_contig19506:6342..6421Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 6343..6421 -
1622930109.1881168-CDS-H-elongata_contig19506:6756..70351622930109.1881168-CDS-H-elongata_contig19506:6756..7035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 6757..7035 -
1691679283.8778327-CDS-H-elongata_contig19506:6756..70351691679283.8778327-CDS-H-elongata_contig19506:6756..7035Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19506 6757..7035 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19506.5433.1

>prot_H-elongata_contig19506.5433.1 ID=prot_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=278bp
MYIIDVCILKQIFDEVDVYGNIYNSDIHHNHFGVFTYGHQQGDWRNNIMR
DNTGYGFDPHDDSDYLTIHDNVVYNNGYHGIIASKRCNDVSIQGNEVYGG
GDISAGIFLHRSSDNATVKGNYVHDNGDAGMAFLESFNATVSDNIFENNK
YGIRFSVGSGYNFFTDNVIYNSTKYNVYTYEGSDDPDVVDSGRPQNNVFS
ENLIVGSSEDIKLKKSDGMQFFDNSFVNTTTIRFDNSTYVVMLGNSGLDL
DEVELKVINGACFDDSSDSGFEPVCSE*
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mRNA from alignment at H-elongata_contig19506:3375..7035-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19506.5433.1 ID=mRNA_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3661bp|location=Sequence derived from alignment at H-elongata_contig19506:3375..7035- (Himanthalia elongata Himel1 dioecious)
ATGTATATTATTGATGTATGTATCTTGAAACAGATCTTCGACGAGGTGGA CGTGTACGGTAACATCTACAACAGCGACATCCACCACAACCACTTCGGGG TCTTCACGTACGGCCACCAGCAGGGAGACTGGAGGAACAACATCATGCGC GACAACACAGGGTACGGCTTCGACCCGCACGATGACAGCGATTACCTCAC CATCCACGACAACGTCGTCTACAACAACGGCTATCATGGAATTATCGCAT CCAAGCGCTGCAACGATGTCTCAATCCAGGTTACACAGCAAAAAGCGCAC AATTTACTGTAGATATCGTCTGACACCCGTCCACAAAGTGTCACAGTAGC ACAGCAGCACTCGGGCGTGTGTATTTTCCACCTGATTGTGAGGCACACAG CGCTTTTTGTCTCCTACCCATTGTGACGCCCTTTCAGAGACGTTTGGGTT TATATCTTCTTAAAGCCATGCTTCTCACCATTCTGTTCCGTTTTTACGGG CTCCCATATTCTGAACGTATCGCAGAAATGTATTAAACAATGCTGTACAC GTTGCTCCTTTCACGCCCCTGCATTTGATATCCGCCACAACCGCATGTTT TCGCGTACCCTCAGGGGAACGAGGTGTATGGTGGGGGGGACATTTCGGCC GGTATCTTCCTCCACCGCTCCAGCGATAACGCGACTGTCAAAGGTGAGAG AGCTCGAAGCGTGAACCCAGTGAGTTCTTCGCCCTTAACGTCTAAATATA TATATGTAGATTGTTCCCGCGCAAACGTGCCATGGAAGTTAGATGTCCCA TCCCTCCTCCCCGATTACGCCACCCCAAATATTCGTCTTCTTCATTGCCT CCACACACCGTTCCCCTTGTCCTTGAAAATATTGGGTGTGGTTTTGATGA CATCCCCTCTTAAGCAGACAAGCGGTATCCGCGACAGCATAATATATTGA TCTGTTAAGACTGAGTCGAGTCGAAGTGGAAAAGGGCGGGACCCACTAGA GGAAGGCAATTGTTTAATCGCGGCGTTTAGCAGCTGCTCGGAAAAAAACA GTCCCTAGGAGCTGTCTCTGTCTTAGGATCCTGATTTTGATTGGTTGATT GAATGCTCAGATAGGCTTATGTTAAAATGCAGTCTGTGGTCACAAGTTAG AGAAGCACCATCATTACAAAGGAAAACGAAAGAAAACGGGAATAGTAGTC CATAATACTCTGAAAAAGTGGCATCTCCAACGAAAATAAACTTATGTGTT TTAAGAAAAAAGGAGAATGCACACAGTTGTTAACGAACTGCGCGTGGCTG TCAGGGCTCGTGCCTACTGTAGAAATGTTACACGAACAGCAGTGGGTCCA CTAAAATAACAAAAAGACGAAAACGAAAAAAAATAATACAACGAAAAAAT ATAGCTCCAATGAAAGGTTATATGGCAGAGACCAAAAAGACACCCGGAGG ATACAGGTTTGCGCCACTTGTTGCTTATTAACTATGGTGAACAAACCAGA ATAAGCACGTTTTCTTTGGGATATCCTCTCCATGGTCCTTCCCGTTACTT TCGGGCATTCTGCTACATGCCATAGTTCAGTCTTAACTTTCTCTGCAGCG ATCTCCGCCCCTTATTCCGCAGTTTTGCGTAATTTCCCCCCGGCCTGGGC TGCAATCGTCCAATGGTCAGCGATGATACCAAGAGCCTTCAGGTCGTCCA GAAGCCACCCCATTCACTCTTTTTCACGCCCCCTCACTCGGGTCGCGTCT CACACAATTTCTCAAAACGTCACGCACTTCGGAAGTCTCGTGTTGTCCAT GCGCGCCCCAAATCCCGTGAACAAGATCCGCCTCCTGCGTTTGATCCCTT CGATCGTCTCACTTCCCGTCTTCATGAGGGTGTCCAGATAGTAGATCCGG TGATCGGTGCGATTATTCTTTCACCAACCGATGCAGCGAATACAGAAGGT GTGGTGGGCTCGGCGAAGCGTGTCGTAGTGGCACGCGCCCGGCACATCAT TGTCTGGAATATTTCTCCTTTTAGCATCCGGATTTTGATCTCAAGAGGAG CACTCGGTCTGTCGTATACTTCCGGGTGCTGTACCATGCGTTGTGTTTGT GCCTATCGACCTCGATGAACAGGTCGGCGTTGTGGTTAGCATTCCCCCTT AGGTATACAAACCCGTTCGTTTGGCTGTACACCTGGCCGTCTATTTCTAT GCTGAATCTGACGGTTGCCTACGGCATCCTCTTTGTGCGAAAACACATAA TCTCAGTTTTGGTCTCCGATAAGGTGAAGCCAAACGCCGCGCACACGGCC ACAATAATTCCCATCGTCCTGAGGTTCTCGAGTGATCACTAGATTAGTCC AGCGTCGTCAGCGTATATTATGCTCCACAGCAACGTCGCCAGGGCTGGCT CTTCGGCCGTTGCTCTCCACCCCCACCCCCACCCCCCTGCCCCCGCTTTT TTCCTGGGGTGCACCATACCGTGCTTTCGGATTGACGATGGACCGGTCAA TTAATCTACACTCTTGACCCTTTGCCATTGTACAAGGCCAAAAATATTAC ATGCATAATCTACGACCGTCGCATGTTAGGCGTAAACATGTAATGTCAAA GCTTACATCATATGCGTATAAATATTTTAATACAAAGATCCCCACCCGAA ACCAATCTCGCAGGCAACTACGTCCACGATAACGGCGACGCCGGCATGGC CTTCCTTGAGAGCTTCAACGCCACCGTGTCTGACAACATCTTCGAGAACA ACAAGTACGGTATAAGGTTCTCCGTTGGGTCGGGCTACAACTTCTTCACC GACAACGTCATATACAACAGCACCAAGTAAGCGATATATATCTTCCTTCT ACCTCTCTTTTTCCTGCTCATTATGCCCGTGATTCTTTGGGGGGGAGTCT TAATGAATTTAGCCTGTTCTACAAATTCCGAAAATCATGCTTGGGTTGAG TTTTAGTATATTGTCCCCTGGCACGATGTGCGGAAGAGTTGGAGTGTATC GCAACACCAGCTCAGCCTCGCACCGCGCGAGGGTGGCTATCATGTACACC GCGAATTTATCTCTGCTCCCTTTCTTTTCACCCCATTATATTGCCATGGT GCACCCACTTAATGATCGCCTCGATCTCTACTAGTCGTACCTTTATCTAC TATGTAACATTTACCATATGCCCTATACCCTGTACCGTATTCATATTACC CTATACCATATATCCTTTACTTTCAAACATGTACTATAGCATACACATTA AAACATATGTCCTACACATAAAAGCATGTATACAATACCATGTACTCTAT ACGATATACCGTGTGCATTTCGTTACTTGCGTCAATATTAACACAAAGGT ATAATGTCTACACGTACGAGGGAAGCGATGATCCGGATGTGGTAGATAGC GGCCGCCCGCAGAACAATGTGTTCTCCGAAAATCTCATCGTCGGATCGAG CGAGGACATTAAGCTCAAAAAGTCGGACGGTATGCAGTTCTTCGACAATA GCTTCGTCAACACCACGACAATCCGCTTTGACAACTCTACCTATGTAGTG ATGCTAGGTAACTCGGGGCTCGATCTGGACGAGGTAGAACTTAAAGTCAT CAACGGGGCATGCTTCGACGATTCCTCGGACTCGGGGTTCGAACCCGTCT GCAGCGAATAG
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Coding sequence (CDS) from alignment at H-elongata_contig19506:3375..7035-

>mRNA_H-elongata_contig19506.5433.1 ID=mRNA_H-elongata_contig19506.5433.1|Name=mRNA_H-elongata_contig19506.5433.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1668bp|location=Sequence derived from alignment at H-elongata_contig19506:3375..7035- (Himanthalia elongata Himel1 dioecious)
ATGTATATTATTGATGTATGTATCTTGAAACAGATCTTCGACGAGGTGGA
CGTGTACGGTAACATCTACAACAGCGACATCCACCACAACCACTTCGGGG
TCTTCACGTACGGCCACCAGCAGGGAGACTGGAGGAACAACATCATGCGC
GACAACACAGGGTACGGCTTCGACCCGCACGATGACAGCGATTACCTCAC
CATCCACGACAACGTCGTCTACAACAACGGCTATCATGGAATTATCGCAT
CCAAGCGCTGCAACGATGTCTCAATCCAGATGTATATTATTGATGTATGT
ATCTTGAAACAGATCTTCGACGAGGTGGACGTGTACGGTAACATCTACAA
CAGCGACATCCACCACAACCACTTCGGGGTCTTCACGTACGGCCACCAGC
AGGGAGACTGGAGGAACAACATCATGCGCGACAACACAGGGTACGGCTTC
GACCCGCACGATGACAGCGATTACCTCACCATCCACGACAACGTCGTCTA
CAACAACGGCTATCATGGAATTATCGCATCCAAGCGCTGCAACGATGTCT
CAATCCAGGGGAACGAGGTGTATGGTGGGGGGGACATTTCGGCCGGTATC
TTCCTCCACCGCTCCAGCGATAACGCGACTGTCAAAGGGGAACGAGGTGT
ATGGTGGGGGGGACATTTCGGCCGGTATCTTCCTCCACCGCTCCAGCGAT
AACGCGACTGTCAAAGGCAACTACGTCCACGATAACGGCGACGCCGGCAT
GGCCTTCCTTGAGAGCTTCAACGCCACCGTGTCTGACAACATCTTCGAGA
ACAACAAGTACGGTATAAGGTTCTCCGTTGGGTCGGGCTACAACTTCTTC
ACCGACAACGTCATATACAACAGCACCAAGCAACTACGTCCACGATAACG
GCGACGCCGGCATGGCCTTCCTTGAGAGCTTCAACGCCACCGTGTCTGAC
AACATCTTCGAGAACAACAAGTACGGTATAAGGTTCTCCGTTGGGTCGGG
CTACAACTTCTTCACCGACAACGTCATATACAACAGCACCAAGTATAATG
TCTACACGTACGAGGGAAGCGATGATCCGGATGTGGTAGATAGCGGCCGC
CCGCAGAACAATGTGTTCTCCGAAAATCTCATCGTCGGATCGAGCGAGGA
CATTAAGCTCAAAAAGTCGGACGGTATGCAGTTCTTCGACAATAGCTTCG
TCAACACCACGACAATCCGCTTTGACAACTCTACCTATGTAGTGATGCTA
GGTAACTCGGGGCTCGATCTGGACGAGGTAGAACTTAAAGTCATCAACGG
GGCATGCTTCGACGATTCCTCGGACTCGGGGTTCGAACCCGTCTGCAGCG
AATAGGTATAATGTCTACACGTACGAGGGAAGCGATGATCCGGATGTGGT
AGATAGCGGCCGCCCGCAGAACAATGTGTTCTCCGAAAATCTCATCGTCG
GATCGAGCGAGGACATTAAGCTCAAAAAGTCGGACGGTATGCAGTTCTTC
GACAATAGCTTCGTCAACACCACGACAATCCGCTTTGACAACTCTACCTA
TGTAGTGATGCTAGGTAACTCGGGGCTCGATCTGGACGAGGTAGAACTTA
AAGTCATCAACGGGGCATGCTTCGACGATTCCTCGGACTCGGGGTTCGAA
CCCGTCTGCAGCGAATAG
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