mRNA_H-elongata_contig195051.5432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig195051.5432.1
Unique NamemRNA_H-elongata_contig195051.5432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A6H5JP79_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JP79_9PHAE)

HSP 1 Score: 121 bits (304), Expect = 2.950e-29
Identity = 68/128 (53.12%), Postives = 89/128 (69.53%), Query Frame = 1
Query:    4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHG--STWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL----------ELQESRMLLGPGER 351
            ++QGGH++ PGPLL NA+ L+RLQFPLG+NF+R+L Y+G  S       LPAF+ L+++M TV VLGT F VYAP+++VVLC FT  KGYARVLRL+GL H DL           + E R L+  G+R
Sbjct:  462 SLQGGHHTLPGPLLFNAQYLIRLQFPLGYNFMRMLRYYGTRSASVPALSLPAFQKLMNDMSTVPVLGTGFTVYAPLVLVVLCAFTYYKGYARVLRLVGLEHVDLVSMDDPGGNARVDEGRELVERGKR 589          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A835ZCR5_9STRA (LMBR1-like membrane protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCR5_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.430e-26
Identity = 60/127 (47.24%), Postives = 83/127 (65.35%), Query Frame = 1
Query:    1 MAVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLE----------LQESRMLLGPGER 351
            +A+ G H S PG L+ NA+ LVRLQFPLG+NF+ +L Y         +  AF  L+S M  V +LGT FN+YAP++MVVLCLFT+C GYAR+LR++G+ HEDL+          + E + L+  G+R
Sbjct:  410 LALNGPHQSLPGQLMFNAQYLVRLQFPLGYNFLTLLHYEKGM----LQHIAFNKLMSNMSVVPLLGTDFNIYAPLIMVVLCLFTACHGYARLLRMVGIEHEDLQCATDKEGQERMDEGKSLIERGKR 532          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A835Z6T2_9STRA (LMBR1-like membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6T2_9STRA)

HSP 1 Score: 108 bits (271), Expect = 7.840e-25
Identity = 57/102 (55.88%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
            A+ G H S P  L+ NA+ LVRLQFPLG+NFV +L   G       +  AF  L+S M  V +LGT FN+YAP+LMV+LCLFT+C+GYAR+LRL+G+ HEDL
Sbjct:  472 ALNGPHQSLPRQLIMNAQYLVRLQFPLGYNFVTLLGPEGGA----LQRIAFNKLMSNMAVVPLLGTDFNIYAPLLMVLLCLFTACRGYARLLRLVGIEHEDL 569          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S4D6Y9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D6Y9_HETAK)

HSP 1 Score: 90.5 bits (223), Expect = 3.100e-20
Identity = 48/100 (48.00%), Postives = 70/100 (70.00%), Query Frame = 1
Query:    4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHE 303
            ++Q   +S+P  LL NA+ ++RLQFPLG++F+ +L +H +T        + +LL+S M  V +LGT+FN YAP++MVVLC FT   GYAR+L LLG+ HE
Sbjct:   65 SLQAPRSSQPSALLFNAQQMIRLQFPLGYSFLLMLNFHRTT--------SLQLLMSNMTVVPILGTSFNHYAPLVMVVLCAFTLFNGYARLLGLLGVEHE 156          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: W7TPT9_9STRA (LMBR1-like membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPT9_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.030e-18
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
            ++QG H S  GPLL NA+ L+RLQFPL +NF+ +L    S      +  AF  L+S M  V +LG  F+VYAP++MVVL  FT  +GYAR+LRL+G  HEDL
Sbjct:  495 SLQGPHQSLAGPLLVNAQYLIRLQFPLAYNFLLMLRSPSS------KQTAFRHLMSNMAVVPLLGRGFSVYAPLMMVVLAAFTYFRGYARLLRLVGAYHEDL 590          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7R9Z808_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z808_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 3.410e-18
Identity = 48/99 (48.48%), Postives = 67/99 (67.68%), Query Frame = 1
Query:   40 LLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESRMLL 336
            L+ NA+ LVRLQFPLG+N++ +L Y  S+        AF  ++S+M+TV   GT+F+VYAP+L++ LC FT C GYAR+L LLG+ HED  L   +  L
Sbjct:   74 LVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSRVMSDMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLGVEHEDAILMGDKETL 167          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2V555_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V555_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 7.250e-18
Identity = 44/102 (43.14%), Postives = 69/102 (67.65%), Query Frame = 1
Query:    4 AVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDL 309
            ++Q  H S+   LL NA+ ++RLQFPLG+NF+ +L Y   T        A +LL++ M  V +LGT+F++YAP ++++LC FT  +GY R+LRLLGL ++ +
Sbjct:   27 SLQAPHQSQSVALLFNAQQMIRLQFPLGYNFLLMLKYSRPT--------ALQLLMNNMSVVPILGTSFSIYAPAILLLLCFFTLFQGYTRLLRLLGLEYDGM 120          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2A7R7_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A7R7_TRICV)

HSP 1 Score: 88.2 bits (217), Expect = 1.090e-17
Identity = 51/105 (48.57%), Postives = 67/105 (63.81%), Query Frame = 1
Query:   16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESR 327
            G    PG  L+ NA+ LVRLQFPLG+N++ +L Y      T     AF  ++S M+TV   GT+F+VYAP+L++ LC FT C GYAR+L LLG+ HED  L   R
Sbjct:  281 GCRQSPGVALIFNAQYLVRLQFPLGYNYLMMLKYD-----TASTTCAFSRVMSHMETVPFFGTSFSVYAPLLILALCGFTLCNGYARLLSLLGMEHEDAILMGDR 380          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2VYF6_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYF6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.370e-17
Identity = 49/98 (50.00%), Postives = 64/98 (65.31%), Query Frame = 1
Query:   16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHED 306
            GH    G  LL +A+ LVRLQFPLG+N++ +L Y  S+        AF  L+S M TV  LGT+F+VYAP+L++ LC FT C GY R++ LLG  HED
Sbjct:   86 GHRQSHGVALLFSAQYLVRLQFPLGYNYLLMLKYDTSS-----TTCAFSNLMSNMSTVPFLGTSFSVYAPLLILCLCGFTLCNGYPRLVALLGFEHED 178          
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Match: A0A7S2XKF6_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XKF6_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 5.660e-17
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:   16 GHNSRPG-PLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELPAFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGHEDLELQESRMLL 336
            GHN   G  L+ NA+ LVRLQFPLG+N++ +L Y  S+        AF  ++S+M TV   GT+F+VYAP++++ LC FT C GY R+L +LG+ HED  L   +  L
Sbjct:  462 GHNQSIGVALVFNAQYLVRLQFPLGYNYLLMLKYDTSS-----TNCAFVHVMSDMSTVPFFGTSFSVYAPLMIIALCCFTLCNGYPRLLAVLGIEHEDAILMGDKETL 564          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig195051.5432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JP79_9PHAE2.950e-2953.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCR5_9STRA4.430e-2647.24LMBR1-like membrane protein n=1 Tax=Tribonema minu... [more]
A0A835Z6T2_9STRA7.840e-2555.88LMBR1-like membrane protein-domain-containing prot... [more]
A0A7S4D6Y9_HETAK3.100e-2048.00Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
W7TPT9_9STRA1.030e-1850.98LMBR1-like membrane protein n=3 Tax=Monodopsidacea... [more]
A0A7R9Z808_9STRA3.410e-1848.48Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2V555_9STRA7.250e-1843.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2A7R7_TRICV1.090e-1748.57Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S2VYF6_9STRA2.370e-1750.00Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2XKF6_9STRA5.660e-1745.37Hypothetical protein n=2 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig195051contigH-elongata_contig195051:472..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue4.4e-26
Seed eggNOG ortholog2880.D7FY43
Preferred nameLMBRD2
KEGG koko:K10393,ko:K16831
GOsGO:0001726,GO:0005575,GO:0005622,GO:0005623,GO:0005856,GO:0005884,GO:0005886,GO:0006810,GO:0006897,GO:0006928,GO:0006935,GO:0008150,GO:0009605,GO:0009987,GO:0015629,GO:0016020,GO:0016043,GO:0016192,GO:0016477,GO:0030030,GO:0031252,GO:0031268,GO:0031941,GO:0032991,GO:0040011,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0048870,GO:0050896,GO:0051179,GO:0051234,GO:0051674,GO:0071840,GO:0071944,GO:0098657,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0120025,GO:0120036
EggNOG free text desc.LMBR1-like membrane protein
EggNOG OGsKOG2296@1,KOG2296@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036,ko04812
Hectar predicted targeting categoryother localisation
Exons2
Model size444
Cds size444
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.0913749-CDS-H-elongata_contig195051:471..7321622930109.0913749-CDS-H-elongata_contig195051:471..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195051 472..732 +
1691679283.8238978-CDS-H-elongata_contig195051:471..7321691679283.8238978-CDS-H-elongata_contig195051:471..732Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195051 472..732 +
1622930109.1025708-CDS-H-elongata_contig195051:904..10871622930109.1025708-CDS-H-elongata_contig195051:904..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195051 905..1087 +
1691679283.834761-CDS-H-elongata_contig195051:904..10871691679283.834761-CDS-H-elongata_contig195051:904..1087Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig195051 905..1087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig195051.5432.1prot_H-elongata_contig195051.5432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig195051 472..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig195051.5432.1

>prot_H-elongata_contig195051.5432.1 ID=prot_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
MAVQGGHNSRPGPLLGNAKILVRLQFPLGFNFVRILFYHGSTWWTDRELP
AFELLVSEMKTVLVLGTTFNVYAPMLMVVLCLFTSCKGYARVLRLLGLGH
EDLELQESRMLLGPGERATLSWLHPVRSDTVIATRTLGYAGACAVYV*
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mRNA from alignment at H-elongata_contig195051:472..1087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig195051.5432.1 ID=mRNA_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=616bp|location=Sequence derived from alignment at H-elongata_contig195051:472..1087+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCGCTCTTAGGGAA TGCTAAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATTTAATTTCGTGC GGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACCGAGAGCTCCCG GCTTTTGAACTTCTCGTTTCCGAGATGAAGACGGTGCTGGTGCTAGGGAC GACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCTGTGCTTGTTCA CGTCCTGCAAGGTCTGGTGCTGAACGTGTAGCCAGAGTAGTCCAGCACGA GAGATCCGGTTCTTGAATGCAAGCTGGTGCCTCTTGTTCCTTTCGAATGT AACTATTGTTTTGTGTTGTCTCCAGAACGACGTTGAGATGACGATCTTCG ATCACCACTAACCACTCACGAACCATCGAACAGGGATACGCGCGCGTCCT GCGGTTGCTGGGACTGGGCCACGAGGATCTCGAGCTGCAGGAGAGTCGAA TGCTGCTTGGGCCAGGAGAGCGCGCCACGCTCAGTTGGTTGCATCCAGTG AGGTCGGATACAGTAATCGCAACGCGCACTTTAGGATATGCCGGAGCATG TGCTGTTTATGTTTAG
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Coding sequence (CDS) from alignment at H-elongata_contig195051:472..1087+

>mRNA_H-elongata_contig195051.5432.1 ID=mRNA_H-elongata_contig195051.5432.1|Name=mRNA_H-elongata_contig195051.5432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig195051:472..1087+ (Himanthalia elongata Himel1 dioecious)
ATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCGCTCTTAGGGAA
TGCTAAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATTTAATTTCGTGC
GGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACCGAGAGCTCCCG
GCTTTTGAACTTCTCGTTTCCGAGATGAAGACGGTGCTGGTGCTAGGGAC
GACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCTGTGCTTGTTCA
CGTCCTGCAAGATGGCTGTGCAGGGCGGCCACAACTCCCGCCCAGGACCG
CTCTTAGGGAATGCTAAAATTTTGGTTCGTCTTCAGTTTCCGCTCGGATT
TAATTTCGTGCGGATCCTGTTCTACCACGGTTCAACGTGGTGGACTGACC
GAGAGCTCCCGGCTTTTGAACTTCTCGTTTCCGAGATGAAGACGGTGCTG
GTGCTAGGGACGACCTTCAACGTCTACGCGCCGATGTTGATGGTGGTCCT
GTGCTTGTTCACGTCCTGCAAGGGATACGCGCGCGTCCTGCGGTTGCTGG
GACTGGGCCACGAGGATCTCGAGCTGCAGGAGAGTCGAATGCTGCTTGGG
CCAGGAGAGCGCGCCACGCTCAGTTGGTTGCATCCAGTGAGGTCGGATAC
AGTAATCGCAACGCGCACTTTAGGATATGCCGGAGCATGTGCTGTTTATG
TTTAGGGATACGCGCGCGTCCTGCGGTTGCTGGGACTGGGCCACGAGGAT
CTCGAGCTGCAGGAGAGTCGAATGCTGCTTGGGCCAGGAGAGCGCGCCAC
GCTCAGTTGGTTGCATCCAGTGAGGTCGGATACAGTAATCGCAACGCGCA
CTTTAGGATATGCCGGAGCATGTGCTGTTTATGTTTAG
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