mRNA_H-elongata_contig19502.5431.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19502.5431.1
Unique NamemRNA_H-elongata_contig19502.5431.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 1.820e-17
Identity = 38/46 (82.61%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+GQSWVLVDGAILDVSEFA RHPGG RLI+N++GTD+T ELLG
Sbjct:  471 KVLNGQSWVLVDGAILDVSEFAQRHPGGRRLIINALGTDITQELLG 516
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 4.650e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVLSGQSW++VD A+LDVS+FAHRHPGG RLILN++GTDVT ELLG
Sbjct:  895 KVLSGQSWLMVDEAVLDVSDFAHRHPGGRRLILNALGTDVTQELLG 940
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 6.340e-17
Identity = 37/46 (80.43%), Postives = 43/46 (93.48%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+GQSWVLVDGAILDVS+FA RHPGG RLI+N++GTD+T ELLG
Sbjct: 1161 KVLNGQSWVLVDGAILDVSDFAKRHPGGQRLIINALGTDITQELLG 1206
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D8LFE2_ECTSI (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE2_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 7.690e-17
Identity = 35/46 (76.09%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+ QSW+ VD AILDVSEFA RHPGG RLILN++GTDVT E+LG
Sbjct:   10 KVLNSQSWLFVDSAILDVSEFAARHPGGRRLILNALGTDVTAEILG 55
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 80.1 bits (196), Expect = 2.210e-16
Identity = 38/46 (82.61%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+GQSW+LVDGAILDVSEF  RHPGG RLILN++GTDVT ELLG
Sbjct:  989 KVLNGQSWLLVDGAILDVSEFTARHPGGRRLILNALGTDVTAELLG 1034
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 78.2 bits (191), Expect = 1.050e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVLSGQSW++VD A+LDVS+FA RHPGG RLILN++GTDVT EL+G
Sbjct:  890 KVLSGQSWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELIG 935
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 1.440e-15
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVLSGQ+W++VD A+LDVS+FA RHPGG RLILN++GTDVT ELLG
Sbjct:  891 KVLSGQTWLMVDEAVLDVSDFAQRHPGGRRLILNALGTDVTQELLG 936
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: A0A6H5JUS3_9PHAE (Cytochrome b5 heme-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUS3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 9.270e-15
Identity = 36/46 (78.26%), Postives = 40/46 (86.96%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+GQSW+LVD AILDV EFA RHPGG RLI+N+ GTDVT ELLG
Sbjct:   76 KVLNGQSWLLVDDAILDVPEFAARHPGGWRLIINAPGTDVTDELLG 121
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: D8LB74_ECTSI (Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB74_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 9.340e-15
Identity = 33/46 (71.74%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            KVL+G+SWV+VDGA+L+VS+FA RHPGG RLI+N++GTDVT E LG
Sbjct:  126 KVLNGRSWVIVDGAVLNVSDFAKRHPGGIRLIINAMGTDVTSEFLG 171
[Close]
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Match: A0A6H5JX59_9PHAE (Cytochrome b5 heme-binding domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX59_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 2.380e-14
Identity = 32/46 (69.57%), Postives = 42/46 (91.30%), Query Frame = 1 
Query:    1 KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG 138
            +VL+G+SWV+VDGA+L+VS+FA RHPGG RLI+N++GTDVT E LG
Sbjct:  197 QVLNGRSWVIVDGAVLNVSDFAERHPGGMRLIINAMGTDVTSEFLG 242
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19502.5431.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7FX04_ECTSI1.820e-1782.61Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
A0A6H5JQ31_9PHAE4.650e-1780.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBL8_9PHAE6.340e-1780.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFE2_ECTSI7.690e-1776.09Cytochrome b5 heme-binding domain-containing prote... [more]
D8LFE6_ECTSI2.210e-1682.61Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J2_ECTSI1.050e-1576.09Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D7G7J1_ECTSI1.440e-1576.09Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JUS3_9PHAE9.270e-1578.26Cytochrome b5 heme-binding domain-containing prote... [more]
D8LB74_ECTSI9.340e-1571.74Delta-9 desaturase n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JX59_9PHAE2.380e-1469.57Cytochrome b5 heme-binding domain-containing prote... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19502contigH-elongata_contig19502:5901..6038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue1.6e-14
Seed eggNOG ortholog2880.D7FX04
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionCytochrome b5-like heme/steroid binding domain
Ec32 orthologEc-07_005950.1
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930109.0467205-CDS-H-elongata_contig19502:5900..60381622930109.0467205-CDS-H-elongata_contig19502:5900..6038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19502 5901..6038 -
1691679283.813278-CDS-H-elongata_contig19502:5900..60381691679283.813278-CDS-H-elongata_contig19502:5900..6038Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19502 5901..6038 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19502.5431.1prot_H-elongata_contig19502.5431.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19502 5901..6038 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19502.5431.1

>prot_H-elongata_contig19502.5431.1 ID=prot_H-elongata_contig19502.5431.1|Name=mRNA_H-elongata_contig19502.5431.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=46bp
KVLSGQSWVLVDGAILDVSEFAHRHPGGARLILNSVGTDVTHELLG
back to top

mRNA from alignment at H-elongata_contig19502:5901..6038-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19502.5431.1 ID=mRNA_H-elongata_contig19502.5431.1|Name=mRNA_H-elongata_contig19502.5431.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=138bp|location=Sequence derived from alignment at H-elongata_contig19502:5901..6038- (Himanthalia elongata Himel1 dioecious)
AAGGTTTTGAGCGGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCTTGGA
CGTGTCAGAGTTCGCCCACAGACATCCGGGGGGCGCTCGCCTGATCCTGA
ATTCGGTAGGCACTGATGTCACGCACGAGCTGCTCGGA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig19502:5901..6038-

>mRNA_H-elongata_contig19502.5431.1 ID=mRNA_H-elongata_contig19502.5431.1|Name=mRNA_H-elongata_contig19502.5431.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=276bp|location=Sequence derived from alignment at H-elongata_contig19502:5901..6038- (Himanthalia elongata Himel1 dioecious)
AAGGTTTTGAGCGGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCTTGGA
CGTGTCAGAGTTCGCCCACAGACATCCGGGGGGCGCTCGCCTGATCCTGA
ATTCGGTAGGCACTGATGTCACGCACGAGCTGCTCGGAAAGGTTTTGAGC
GGGCAGAGCTGGGTGCTGGTGGACGGGGCGATCTTGGACGTGTCAGAGTT
CGCCCACAGACATCCGGGGGGCGCTCGCCTGATCCTGAATTCGGTAGGCA
CTGATGTCACGCACGAGCTGCTCGGA
back to top