mRNA_H-elongata_contig194509.5406.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: D7FP68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP68_ECTSI) HSP 1 Score: 162 bits (409), Expect = 1.090e-46 Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
IVGDKFLRE GG+P+ GWQ RGEKCVAEFWGKNRAKELERFRTDP+C VLLL K+GAHGLDLSFVTHMFLM+QIWDRSLETQV
Sbjct: 46 IVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAKELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQV 128
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A6H5JNK1_9PHAE (SNF2-rel_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK1_9PHAE) HSP 1 Score: 162 bits (409), Expect = 8.430e-45 Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
IVGDKFLRE GG+P+ GWQ RGEKCVAEFWGKNRAKELERFRTDP+C VLLL K+GAHGLDLSFVTHMFLM+QIWDRSLETQV
Sbjct: 371 IVGDKFLRELGGFPEEGWQRRGEKCVAEFWGKNRAKELERFRTDPECFVLLLGKRGAHGLDLSFVTHMFLMDQIWDRSLETQV 453
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A835Z414_9STRA (SNF2 family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z414_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 1.380e-22 Identity = 45/83 (54.22%), Postives = 61/83 (73.49%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
+VGDK R +G P+ GW RG + VAEF+G R EL +F+T DC VLLL+ G+ GLDLSFVTH++L+E+IW+++LE QV
Sbjct: 1102 MVGDKMYRYYGRCPEAGWLERGSEQVAEFFGARRNDELTKFKTSADCFVLLLNMDGSTGLDLSFVTHIYLLEEIWNKALERQV 1184
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S2UJZ7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJZ7_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 1.170e-21 Identity = 42/83 (50.60%), Postives = 60/83 (72.29%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
++GD+ +R+FG + ++E+WG +AKEL++F PDC ++LLS+ G+HGLDLSFVTHMF ME+IWD+SLE QV
Sbjct: 444 LIGDRLIRKFG-----------DDNISEYWGYAKAKELDKFIYSPDCFIMLLSRDGSHGLDLSFVTHMFFMEEIWDKSLEQQV 515
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S3L006_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L006_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 1.950e-20 Identity = 39/82 (47.56%), Postives = 54/82 (65.85%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQ 246
+VGD+ L FG CV+E+WG+ R +EL +F +DP+C +LL K G+ GLDLSFVTH+F +E+IWD+SL Q
Sbjct: 12 LVGDRLLGRFG-----------SACVSEYWGRYRTQELHKFTSDPECFCMLLGKDGSEGLDLSFVTHIFFLEEIWDKSLAEQ 82
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S0B0U2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0U2_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 3.570e-20 Identity = 40/82 (48.78%), Postives = 57/82 (69.51%), Query Frame = 1
Query: 4 VGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
VGD+ +R FGG VAE+WG R+KELE+F + P C +LL K+G+HGLDLSFVT++ L+++++DRSL+ QV
Sbjct: 1 VGDRLIRRFGG-----------ASVAEYWGSTRSKELEKFVSSPSCFCMLLGKEGSHGLDLSFVTNIILLDEMYDRSLQDQV 71
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A448ZGK3_9STRA (RING-type domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZGK3_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 6.950e-20 Identity = 42/83 (50.60%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
I GD+ LR FG C+AE+WGK R KEL++F D C+ +LL K G+ GLDLSFVTH+ +EQ+WD+SLE QV
Sbjct: 1387 ITGDRLLRRFG-----------SGCIAEYWGKYRKKELQKFVRDEKCLCMLLGKDGSEGLDLSFVTHIVFLEQVWDKSLENQV 1458
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A1Z5KNI5_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KNI5_FISSO) HSP 1 Score: 90.1 bits (222), Expect = 3.290e-19 Identity = 42/83 (50.60%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
+VGD+ R FG CVAE+WG+ R +EL +F DC+ LLL+K G+ GLDLSFVTH+FL+E+IWD++LE QV
Sbjct: 1075 VVGDRLYRRFG-----------SACVAEYWGRYRKEELSKFIHRNDCVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQV 1146
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A1Z5KLC0_FISSO (Peptidyl-prolyl cis-trans isomerase A n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KLC0_FISSO) HSP 1 Score: 89.4 bits (220), Expect = 6.140e-19 Identity = 41/83 (49.40%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
+VGD+ R FG CVAE+WG+ R +EL +F +C+ LLL+K G+ GLDLSFVTH+FL+E+IWD++LE QV
Sbjct: 1078 VVGDRLYRRFG-----------SACVAEYWGRYRKEELSKFIHHSECVCLLLTKDGSEGLDLSFVTHIFLLEEIWDKALEDQV 1149
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Match: A0A7S0C464_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C464_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 1.110e-18 Identity = 39/83 (46.99%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLLLSKKGAHGLDLSFVTHMFLMEQIWDRSLETQV 249
+VGD+ +R FG C+AE+WG +R EL +F +C +LL K G+HGLDLSFVTH+F +E+IWD+SL+ QV
Sbjct: 444 VVGDRLIRRFG-----------NDCIAEYWGGHRKSELAKFILSENCFCMLLGKDGSHGLDLSFVTHIFFVEEIWDKSLKDQV 515 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194509.5406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig194509.5406.1 >prot_H-elongata_contig194509.5406.1 ID=prot_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=83bp IVGDKFLREFGGYPDMGWQGRGEKCVAEFWGKNRAKELERFRTDPDCMVLback to top mRNA from alignment at H-elongata_contig194509:53..1037+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig194509.5406.1 ID=mRNA_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=985bp|location=Sequence derived from alignment at H-elongata_contig194509:53..1037+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig194509:53..1037+ >mRNA_H-elongata_contig194509.5406.1 ID=mRNA_H-elongata_contig194509.5406.1|Name=mRNA_H-elongata_contig194509.5406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=498bp|location=Sequence derived from alignment at H-elongata_contig194509:53..1037+ (Himanthalia elongata Himel1 dioecious)back to top |