mRNA_H-elongata_contig194464.5403.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194464.5403.1
Unique NamemRNA_H-elongata_contig194464.5403.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A6H5KMF3_9PHAE (Hist_deacetyl domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KMF3_9PHAE)

HSP 1 Score: 241 bits (614), Expect = 1.870e-71
Identity = 115/128 (89.84%), Postives = 122/128 (95.31%), Query Frame = 1 
Query:    1 RKPLVLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQ 384
            R+PLVLDVGMPLP   D PGASRHRWRDVYRK+ILPKL AF+PD+ILVSAGFDAHKKD INYGYIGLLEEDYEW+TQQLVQVAN+CC+GRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQ
Sbjct:  867 REPLVLDVGMPLPEIGDTPGASRHRWRDVYRKDILPKLVAFDPDIILVSAGFDAHKKDVINYGYIGLLEEDYEWVTQQLVQVANRCCEGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQ 994
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A835YM84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM84_9STRA)

HSP 1 Score: 196 bits (498), Expect = 1.100e-55
Identity = 94/134 (70.15%), Postives = 109/134 (81.34%), Query Frame = 1 
Query:    7 PLVLDVGMPLPGSDDIPGASRHRWRDVY---------RKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESR 381
            P++LDVG+PLP   D PG SR +WR+ Y         RKE+LP L  FNPD+IL+SAGFDAH+KD IN+GYIGLL+EDYEW+T QLVQVAN+CC GR+VSVLEGGYRIQGG VSAFGRSVAGHVRAL +GC SR
Sbjct:  805 PMILDVGLPLPQPHDTPGRSRLQWRNAYSXXXXXXXHRKEVLPALVEFNPDIILISAGFDAHRKDVINFGYIGLLDEDYEWVTAQLVQVANRCCDGRVVSVLEGGYRIQGGPVSAFGRSVAGHVRALREGCASR 938
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S1E613_9STRA (Hypothetical protein n=2 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E613_9STRA)

HSP 1 Score: 174 bits (442), Expect = 2.100e-52
Identity = 77/125 (61.60%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            +L+ G+ LP  D IPG  R   RD YRK +LP+L  F+PD+I +SAGFDAH+KD++N+GY+G++E+DYEW+T+Q+V+VAN CC GR+VSVLEGGY++ GGIVS F RSVA HVRALVDG  SR++
Sbjct:   56 ILNCGLGLPPRDAIPGMQRLELRDTYRKSVLPRLREFDPDIIFISAGFDAHRKDTMNFGYVGMVEDDYEWVTEQIVKVANSCCNGRVVSVLEGGYKVHGGIVSPFARSVASHVRALVDGGRSREL 180
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7R9Z845_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z845_9STRA)

HSP 1 Score: 176 bits (445), Expect = 6.840e-51
Identity = 77/125 (61.60%), Postives = 102/125 (81.60%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            ++++G+ LP   D+PG  R   RD YRK ILP L  F+PD+I +SAGFDAHKKD++N+GY+G++E+DYEW+T+QLV+VAN CC GR++SVLEGGY+I GGI+S F RSVA HVRALVDG  SR++
Sbjct:  178 IINIGLDLPRPHDVPGMQRVELRDSYRKNILPHLLDFDPDMIFISAGFDAHKKDTMNFGYVGMVEDDYEWVTEQLVKVANSCCNGRIISVLEGGYKIHGGIISPFARSVASHVRALVDGGSSREL 302
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7R9WSY4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WSY4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.150e-50
Identity = 75/125 (60.00%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            +++  + LP  D + G  R   RD YR++ILPKL  F+PD+I +SAGFDAHKKD++N+GY+G++E+DYEW+T+QLV++AN CC GR+VSVLEGGY+I GGIVS F RSVA HVRAL DG +SR++
Sbjct:   13 IMNCALGLPRPDAVAGMQRLELRDTYRQKILPKLREFDPDIIFISAGFDAHKKDTMNFGYVGMVEDDYEWVTEQLVKIANTCCNGRIVSVLEGGYKIHGGIVSPFARSVASHVRALADGGKSREL 137
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S2FDC1_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FDC1_9STRA)

HSP 1 Score: 169 bits (429), Expect = 1.840e-50
Identity = 80/125 (64.00%), Postives = 96/125 (76.80%), Query Frame = 1 
Query:    4 KPLVLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCES 378
            +P +++ G  L   D  PG +R  WRD YR+ ILPKLA FNPDLIL+SAGFDAHKKD++  G+IGLLE+DY W+TQQLV+VANKCC GR+VS+LEGGY   GG  SAF RSVA HV AL +GC S
Sbjct:    4 EPKIINFGFALLSPDATPGTARLEWRDAYRRTILPKLAEFNPDLILISAGFDAHKKDTMACGFIGLLEDDYTWVTQQLVKVANKCCDGRIVSMLEGGYMTDGGPSSAFARSVAAHVGALTEGCVS 128
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S2UJ04_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ04_9STRA)

HSP 1 Score: 181 bits (459), Expect = 2.200e-50
Identity = 82/125 (65.60%), Postives = 104/125 (83.20%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            +++ G+ +PG DDIPG  R   RD YRK+ILP L  F+PDLI +SAGFDAHKKD++N+GY+G++E+DYEW+T+QLV+VAN CC GR+VSVLEGGY+I GGIVS F RSVA HVRALVDG  SR++
Sbjct:  887 IINCGLDIPGPDDIPGMQRVELRDSYRKKILPYLMDFDPDLIFISAGFDAHKKDTMNFGYVGMIEDDYEWVTEQLVKVANTCCNGRIVSVLEGGYKIHGGIVSPFARSVASHVRALVDGGNSREL 1011
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S2QZ77_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZ77_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.930e-50
Identity = 82/124 (66.13%), Postives = 103/124 (83.06%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQ 384
            ++++G+ LP  DDIPG  R   RD YRKEILP L  F+PD+I +SAGFDAHK+DS+N+GY+G++E+DYEW+T+QLV+VAN CC GR+VSVLEGGY+I GGIVS F RSVA HVRALVDG  SR+
Sbjct:  518 IINMGLSLPKPDDIPGMQRIEVRDSYRKEILPHLMDFDPDIIFISAGFDAHKRDSMNFGYVGMVEDDYEWVTEQLVKVANACCNGRIVSVLEGGYKIHGGIVSPFARSVASHVRALVDGGSSRE 641
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S4IZS9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4IZS9_9STRA)

HSP 1 Score: 175 bits (443), Expect = 2.070e-49
Identity = 78/125 (62.40%), Postives = 101/125 (80.80%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            +++VG+ LP   D+PG  R   RD YRK ILP L  F+PD+I VSAGFDAHKKDS+N+GY+G++E+DYEW+T+QL++VAN CC GR+VSVLEGGY++ GGI+S F RSVA HVRAL DG  SR++
Sbjct:  385 IINVGLDLPRPHDVPGMQRVELRDSYRKNILPHLLDFDPDMIFVSAGFDAHKKDSMNFGYVGMVEDDYEWVTEQLIKVANSCCNGRIVSVLEGGYKMHGGIISPFARSVASHVRALADGGSSREL 509
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BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Match: A0A7S3Q0M5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q0M5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 1.240e-48
Identity = 81/125 (64.80%), Postives = 100/125 (80.00%), Query Frame = 1 
Query:   13 VLDVGMPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDSINYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAFGRSVAGHVRALVDGCESRQV 387
            +++VG+ LP   + PG  R   RD YRK ILP L  FNPDLI +SAGFDAHK+D +NYGY+G++EEDYEW+T+QLV+VANKCC GR+VSVLEGGYRI GGIVS F RSVA HVR L++G  SR++
Sbjct:  867 IINVGLNLPVPGETPGMQRVETRDAYRKNILPHLLDFNPDLIFISAGFDAHKRDEMNYGYVGMVEEDYEWLTEQLVKVANKCCNGRIVSVLEGGYRIHGGIVSPFARSVASHVRGLMEGGNSREL 991
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194464.5403.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMF3_9PHAE1.870e-7189.84Hist_deacetyl domain-containing protein n=2 Tax=Ec... [more]
A0A835YM84_9STRA1.100e-5570.15Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1E613_9STRA2.100e-5261.60Hypothetical protein n=2 Tax=Thalassionema nitzsch... [more]
A0A7R9Z845_9STRA6.840e-5161.60Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7R9WSY4_9STRA1.150e-5060.00Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S2FDC1_9STRA1.840e-5064.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2UJ04_9STRA2.200e-5065.60Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A7S2QZ77_9STRA2.930e-5066.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4IZS9_9STRA2.070e-4962.40Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S3Q0M5_9STRA1.240e-4864.80Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194464contigH-elongata_contig194464:311..1063 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.0
Seed ortholog evalue2.3e-57
Seed eggNOG ortholog2880.D8LR52
EggNOG free text desc.NAD-dependent histone deacetylase activity (H3-K14 specific)
EggNOG OGsCOG0123@1,COG0666@1,KOG1343@2759,KOG4177@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size387
Cds size360
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194464.5403.1prot_H-elongata_contig194464.5403.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194464 311..1036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.038423-CDS-H-elongata_contig194464:310..4541622930106.038423-CDS-H-elongata_contig194464:310..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194464 311..454 -
1691679282.414094-CDS-H-elongata_contig194464:310..4541691679282.414094-CDS-H-elongata_contig194464:310..454Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194464 311..454 -
1622930106.050836-CDS-H-elongata_contig194464:820..10361622930106.050836-CDS-H-elongata_contig194464:820..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194464 821..1036 -
1691679282.4276054-CDS-H-elongata_contig194464:820..10361691679282.4276054-CDS-H-elongata_contig194464:820..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194464 821..1036 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930106.0683806-UTR-H-elongata_contig194464:1036..10631622930106.0683806-UTR-H-elongata_contig194464:1036..1063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194464 1037..1063 -
1691679282.4361584-UTR-H-elongata_contig194464:1036..10631691679282.4361584-UTR-H-elongata_contig194464:1036..1063Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194464 1037..1063 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194464.5403.1

>prot_H-elongata_contig194464.5403.1 ID=prot_H-elongata_contig194464.5403.1|Name=mRNA_H-elongata_contig194464.5403.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=120bp
MPLPGSDDIPGASRHRWRDVYRKEILPKLAAFNPDLILVSAGFDAHKKDS
INYGYIGLLEEDYEWITQQLVQVANKCCQGRLVSVLEGGYRIQGGIVSAF
GRSVAGHVRALVDGCESRQV
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mRNA from alignment at H-elongata_contig194464:311..1063-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194464.5403.1 ID=mRNA_H-elongata_contig194464.5403.1|Name=mRNA_H-elongata_contig194464.5403.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=753bp|location=Sequence derived from alignment at H-elongata_contig194464:311..1063- (Himanthalia elongata Himel1 dioecious)
AGGAAGCCTTTGGTTCTGGACGTGGGCATGCCGCTCCCGGGAAGCGACGA
CATTCCCGGGGCGTCCCGTCACCGGTGGCGCGACGTCTACCGCAAGGAGA
TCCTCCCTAAGCTCGCGGCGTTTAACCCGGACTTGATCCTCGTCAGCGCC
GGCTTTGACGCTCACAAGAAGGACTCCATCAATTATGGCTACATCGGGCT
ACTCGAGGAGGATTACGAGTGGATTACCCAGCAATTAGTGCAGGTTTGCG
AAGGTGTTTTTGAGATTTGGGGGAGGGTTGGGGAACGGGGAGTGGCGTAA
GAGGCAAGAGCCTGTTGTCGTGGGGGCGATGATGCCGATCTTTGTTGGGG
TTCTGTTTATGTTCCCCCCATTTTGTTTTCGAGCGATGGACTGTCGATCA
TGCACCCGGCGGTGGATTGTCGGTCGTATCTCTGATTTCTTAGATGTTTT
TGAGTGCGCCGACTGCTCTCGATTCGTTGCTTCGTATCGCCCCCTATCTT
GCCATCCCACCCCTTCACTACCCGTGACATGACCCGCATCTCCACGACTA
TCTCCATAGCTATGTCCCCCTTCCCCGGCGGGTAACCCGCTTTGCGTTTG
ATCGCATAGGTGGCCAACAAGTGCTGCCAGGGCCGACTGGTGTCCGTCCT
CGAGGGGGGCTACCGCATCCAGGGAGGCATCGTTTCCGCGTTCGGCAGGA
GCGTTGCGGGGCACGTGAGGGCGCTCGTGGACGGCTGCGAATCTCGGCAG
GTC
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Coding sequence (CDS) from alignment at H-elongata_contig194464:311..1063-

>mRNA_H-elongata_contig194464.5403.1 ID=mRNA_H-elongata_contig194464.5403.1|Name=mRNA_H-elongata_contig194464.5403.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=720bp|location=Sequence derived from alignment at H-elongata_contig194464:311..1063- (Himanthalia elongata Himel1 dioecious)
ATGCCGCTCCCGGGAAGCGACGACATTCCCGGGGCGTCCCGTCACCGGTG
GCGCGACGTCTACCGCAAGGAGATCCTCCCTAAGCTCGCGGCGTTTAACC
CGGACTTGATCCTCGTCAGCGCCGGCTTTGACGCTCACAAGAAGGACTCC
ATCAATTATGGCTACATCGGGCTACTCGAGGAGGATTACGAGTGGATTAC
CCAGCAATTAGTGCAGATGCCGCTCCCGGGAAGCGACGACATTCCCGGGG
CGTCCCGTCACCGGTGGCGCGACGTCTACCGCAAGGAGATCCTCCCTAAG
CTCGCGGCGTTTAACCCGGACTTGATCCTCGTCAGCGCCGGCTTTGACGC
TCACAAGAAGGACTCCATCAATTATGGCTACATCGGGCTACTCGAGGAGG
ATTACGAGTGGATTACCCAGCAATTAGTGCAGGTGGCCAACAAGTGCTGC
CAGGGCCGACTGGTGTCCGTCCTCGAGGGGGGCTACCGCATCCAGGGAGG
CATCGTTTCCGCGTTCGGCAGGAGCGTTGCGGGGCACGTGAGGGCGCTCG
TGGACGGCTGCGAATCTCGGCAGGTCGTGGCCAACAAGTGCTGCCAGGGC
CGACTGGTGTCCGTCCTCGAGGGGGGCTACCGCATCCAGGGAGGCATCGT
TTCCGCGTTCGGCAGGAGCGTTGCGGGGCACGTGAGGGCGCTCGTGGACG
GCTGCGAATCTCGGCAGGTC
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