mRNA_H-elongata_contig194277.5398.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194277.5398.1
Unique NamemRNA_H-elongata_contig194277.5398.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A6H5LL89_9PHAE (Peptidase_M23 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LL89_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 1.630e-37
Identity = 68/95 (71.58%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            VLA R+GVVAA CDHF EGG  + L PRAN+VALRH DGTYTRYVHLM GGVLV+V Q V AG+ IALSGNTG++  PHLHFD V VLPQE+  L
Sbjct:   35 VLASRAGVVAAYCDHFGEGGLRQGLRPRANYVALRHRDGTYTRYVHLMRGGVLVQVGQEVAAGEVIALSGNTGYSPTPHLHFDAVKVLPQETSEL 129          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A8J2WE38_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WE38_9STRA)

HSP 1 Score: 122 bits (306), Expect = 4.970e-31
Identity = 58/95 (61.05%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            VLA R G +AAV DHFR GG    L PRANFVA+RH DG+Y RY HL   G L +V + V  GQ IA SGNTG+T GPHLHFD+VN+LP+E+  L
Sbjct:   88 VLAARGGTIAAVVDHFRGGGAKAHLAPRANFVAVRHSDGSYARYYHLKEKGSLYKVGERVGRGQQIAWSGNTGYTGGPHLHFDLVNLLPEETSTL 182          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A7S3K4G7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K4G7_9STRA)

HSP 1 Score: 121 bits (304), Expect = 1.050e-30
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            VLA R GVVAAV  HF  GG    L PRAN++A+RH DG+Y RY HL   G  ++V   VK GQ IALSGNTG+T GPHLHFDVVNVLP+E+  L
Sbjct:   70 VLAARGGVVAAVVTHFSGGGARAHLAPRANYIAIRHDDGSYGRYYHLRKDGSKLKVGDRVKRGQVIALSGNTGYTGGPHLHFDVVNVLPEETAIL 164          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A7S2C303_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C303_9STRA)

HSP 1 Score: 118 bits (296), Expect = 6.590e-30
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            ++A R GVVAA   HF EGG +  L PRANFVA++H DGTY RY HL   GV V     VKAGQ + LSGNTGF++ PHLHFDVV++LP+++  L
Sbjct:   79 LVAARPGVVAATAGHFNEGGLEGKLRPRANFVAVQHSDGTYARYFHLRRQGVTVEAGDTVKAGQQVGLSGNTGFSSTPHLHFDVVDMLPEDTCVL 173          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: UPI001E6149D6 (M23 family metallopeptidase n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001E6149D6)

HSP 1 Score: 112 bits (281), Expect = 1.400e-29
Identity = 55/90 (61.11%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQ 270
            VLA R GVV  V D FREGG DE+L  RAN + +RH DGT   YVHLM GG  VRV Q V+ GQ I LSGNTG++TGPHLHF+V  + P 
Sbjct:   56 VLAAREGVVVEVRDTFREGGADEALRDRANRIKIRHDDGTIGAYVHLMRGGARVRVGQRVRRGQVIGLSGNTGYSTGPHLHFEVYKIEPN 145          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A7S2HAX5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HAX5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.740e-29
Identity = 50/90 (55.56%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    7 AGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQES 276
            A R+GVVAA   HF +GG      PRANF+A++H DGTY RY HL   G   +V   V AGQ +ALSGNTGF++ PHLHFDV N+LP+++
Sbjct:    1 AARTGVVAAAVAHFDKGGLKNDFRPRANFIAIQHADGTYARYFHLQKNGCSAKVGDQVIAGQQVALSGNTGFSSCPHLHFDVTNMLPEDT 90          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: F0Y178_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y178_AURAN)

HSP 1 Score: 117 bits (293), Expect = 5.100e-29
Identity = 58/95 (61.05%), Postives = 66/95 (69.47%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            V A R GVVAAV  HF  GG    L PRANFVA+RH DG+Y RY HL   G L +V   V+AGQ IA SGNTG+T GPHLH DVVN+LP+E+  L
Sbjct:   91 VHAVRGGVVAAVVQHFSGGGAKAHLAPRANFVAVRHDDGSYARYYHLRTDGSLFKVGDSVEAGQHIAFSGNTGYTGGPHLHLDVVNLLPEETSRL 185          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: R1ECT1_EMIHU (Peptidase_M23 domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1ECT1_EMIHU)

HSP 1 Score: 107 bits (267), Expect = 6.020e-26
Identity = 51/95 (53.68%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            VLA R+GVV   CD FR G       P AN V LRH DG Y+RY HL  G +   V   V  GQPIA SGNTGF++GPHLHFDV +  P E+  L
Sbjct:   80 VLAARAGVVVEACDVFRAGAPKPEYRPLANHVVLRHADGLYSRYFHLKQGSLRTSVGAAVSVGQPIAASGNTGFSSGPHLHFDVTDSTPTETSLL 174          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A7S4BTM6_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BTM6_CHRCT)

HSP 1 Score: 107 bits (268), Expect = 2.000e-25
Identity = 56/95 (58.95%), Postives = 64/95 (67.37%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            V+A R G VAAVCD F EGG  + L  RAN V +RH DG Y+RY HL     LV   Q V AGQ IA SGNTGF++GPHLHFDVV+V   E+ CL
Sbjct:   72 VVAAREGEVAAVCDCFTEGGLRKELKARANHVVIRHADGLYSRYYHLQPSSALVCKGQRVTAGQRIAASGNTGFSSGPHLHFDVVDVFNLET-CL 165          
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Match: A0A7S3BY81_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3BY81_9EUKA)

HSP 1 Score: 105 bits (262), Expect = 2.140e-25
Identity = 51/95 (53.68%), Postives = 63/95 (66.32%), Query Frame = 1
Query:    1 VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYGGVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECL 285
            VLA R GVVAA  D+F  GGH      +AN+VA+RH DG Y+RY HL +  ++V   Q+V  GQPIA SGNTG++  PHLHFDVV+ L  E   L
Sbjct:   32 VLATRDGVVAAAVDNFTGGGHRLENKAKANYVAIRHVDGLYSRYYHLQHRSLMVSEGQIVVTGQPIARSGNTGYSAAPHLHFDVVDRLSTEFASL 126          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194277.5398.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LL89_9PHAE1.630e-3771.58Peptidase_M23 domain-containing protein n=1 Tax=Ec... [more]
A0A8J2WE38_9STRA4.970e-3161.05Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3K4G7_9STRA1.050e-3062.11Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2C303_9STRA6.590e-3057.89Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI001E6149D61.400e-2961.11M23 family metallopeptidase n=1 Tax=Rhodocaloribac... [more]
A0A7S2HAX5_9STRA3.740e-2955.56Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
F0Y178_AURAN5.100e-2961.05Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
R1ECT1_EMIHU6.020e-2653.68Peptidase_M23 domain-containing protein n=1 Tax=Em... [more]
A0A7S4BTM6_CHRCT2.000e-2558.95Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S3BY81_9EUKA2.140e-2553.68Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194277contigH-elongata_contig194277:119..1055 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.7
Seed ortholog evalue6e-24
Seed eggNOG ortholog44056.XP_009034366.1
EggNOG free text desc.Peptidase family M23
EggNOG OGs2E5ZJ@1,2SCR8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionDuplicated hybrid motif
Ec32 orthologEc-04_005300.1
Exons2
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.651458-CDS-H-elongata_contig194277:118..2351622930105.651458-CDS-H-elongata_contig194277:118..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194277 119..235 -
1691679282.2373133-CDS-H-elongata_contig194277:118..2351691679282.2373133-CDS-H-elongata_contig194277:118..235Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194277 119..235 -
1622930105.6657393-CDS-H-elongata_contig194277:881..10551622930105.6657393-CDS-H-elongata_contig194277:881..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194277 882..1055 -
1691679282.2476134-CDS-H-elongata_contig194277:881..10551691679282.2476134-CDS-H-elongata_contig194277:881..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194277 882..1055 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194277.5398.1prot_H-elongata_contig194277.5398.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194277 119..1055 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194277.5398.1

>prot_H-elongata_contig194277.5398.1 ID=prot_H-elongata_contig194277.5398.1|Name=mRNA_H-elongata_contig194277.5398.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=97bp
VLAGRSGVVAAVCDHFREGGHDESLLPRANFVALRHPDGTYTRYVHLMYG
GVLVRVNQVVKAGQPIALSGNTGFTTGPHLHFDVVNVLPQESECLG*
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mRNA from alignment at H-elongata_contig194277:119..1055-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194277.5398.1 ID=mRNA_H-elongata_contig194277.5398.1|Name=mRNA_H-elongata_contig194277.5398.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=937bp|location=Sequence derived from alignment at H-elongata_contig194277:119..1055- (Himanthalia elongata Himel1 dioecious)
GTCCTGGCGGGGCGCAGCGGCGTGGTGGCGGCTGTCTGCGACCACTTCAG GGAAGGCGGACACGATGAGAGCCTCCTACCTCGGGCGAACTTCGTTGCTC TGCGGCACCCGGACGGGACGTACACCCGCTACGTGCACCTCATGTACGGA GGCGTTTTGGTGCGGGTCAACCAGGTGAGGTCCAGAAAACGAGTCGAAGG ATGGTCGCCCGCCGTAAGGAGTTCGTGCAGAATGCTCGTGGGGGGGCGGG GGGGGGGGTTCTCGGACGGACGAGTTGAGCCACCACCTATGTCACGAAAA ACAAAAACTGCGACAGTATGGGGGGAGGGTAGCAATGGCTTGTGGGTCGG TGGGCTCGTGATTGCAGTAGTTGCCGTTGTGTACCCGGAATCGTTCGCAG TGAGTGGCGTGCATCGGTGGTTGACCTGGGCATAAGCCAATAAATTTGAA CGGTCGGCTGCGGATTCTGTTAGTATACAGCGCAGGGAGGCGTTTTTGCG CTATCTCTTCCCCAAGTAAGTGTAAAATAGCACAAATAGACAACTATGAT TGATCTCCCATTGGGAGGAGGATCAATGCTATTAATAGAGTAGCCTAGAA AAACTAGCATGATAGGGCCGGATTGCCTTAGCGGTTATATGCAATTTAAT CAATACGCACACATACGCACACACACATGTATATATATATAATATAATAT ATATATATATGCGCGCACAAACTCATTTAGCGTCTGACCGACCGTGCCTT TATGTCATCCCTCATTTACTCTATTGTCCGCCACGTGCCGTTTTCCTTTG GGGGGTGGGGTCGTTTCTAGGTTGTCAAGGCCGGCCAGCCGATCGCTCTC AGCGGGAACACTGGCTTCACGACAGGGCCCCACCTGCACTTCGACGTCGT CAACGTCCTGCCTCAAGAAAGTGAGTGTCTTGGCTAG
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Coding sequence (CDS) from alignment at H-elongata_contig194277:119..1055-

>mRNA_H-elongata_contig194277.5398.1 ID=mRNA_H-elongata_contig194277.5398.1|Name=mRNA_H-elongata_contig194277.5398.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=582bp|location=Sequence derived from alignment at H-elongata_contig194277:119..1055- (Himanthalia elongata Himel1 dioecious)
GTCCTGGCGGGGCGCAGCGGCGTGGTGGCGGCTGTCTGCGACCACTTCAG
GGAAGGCGGACACGATGAGAGCCTCCTACCTCGGGCGAACTTCGTTGCTC
TGCGGCACCCGGACGGGACGTACACCCGCTACGTGCACCTCATGTACGGA
GGCGTTTTGGTGCGGGTCAACCAGGTCCTGGCGGGGCGCAGCGGCGTGGT
GGCGGCTGTCTGCGACCACTTCAGGGAAGGCGGACACGATGAGAGCCTCC
TACCTCGGGCGAACTTCGTTGCTCTGCGGCACCCGGACGGGACGTACACC
CGCTACGTGCACCTCATGTACGGAGGCGTTTTGGTGCGGGTCAACCAGGT
TGTCAAGGCCGGCCAGCCGATCGCTCTCAGCGGGAACACTGGCTTCACGA
CAGGGCCCCACCTGCACTTCGACGTCGTCAACGTCCTGCCTCAAGAAAGT
GAGTGTCTTGGCTAGGTTGTCAAGGCCGGCCAGCCGATCGCTCTCAGCGG
GAACACTGGCTTCACGACAGGGCCCCACCTGCACTTCGACGTCGTCAACG
TCCTGCCTCAAGAAAGTGAGTGTCTTGGCTAG
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