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Homology
BLAST of mRNA_H-elongata_contig19425.5397.1 vs. uniprot
Match: D7FT50_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FT50_ECTSI) HSP 1 Score: 365 bits (938), Expect = 3.830e-119 Identity = 222/386 (57.51%), Postives = 264/386 (68.39%), Query Frame = 1
Query: 244 QGRAKRKTA---LGGYFSESHMSSKARGDEISKRSTAVAEAARKVAFIRANSFKGARPGYMFQKGASGLGYYFDKV----FSAREAREEMQRRAGEGEEESRSAARWEDAPGKVAAAKVGVARRPSVDVLAAGHKLEALLLKPKKAAKAASLMADLMDAEMRPENAAMFFRALRPLAEEPAGDAALASGEGAARAFCLLVDRGADWLSNPSDRVRVVTWGLLFGLRHDVKTDDSFQFARAVKRLREAIEALGDAAGGGDASD-----------TISGGGEKMCAADEAASLPLERKRAIVLIMQETFKSYHLAWARSSIEPAFKAASDRRRLFPEGDLREALDGFTETITKRQRNPSGALAPPSRSVRALNSTAHPTLNKRSDVIR 1347
Q +A++ TA GGYF + ++ ++VAEA+R+ F A+SF GAR GY+FQKG GLGYY D+V +A +A R G E S R E + + +VDV A+ KL+ +LKPKKAAKAASLMADLM+A +RPENA MFFRAL+PLAEEPAG+AALA+GEG ARAF L R ++W+ PS+ VR VTW LLFGLRHD KTDDSF FARA+KRLREAIEALG GGG A+D T S GG ++ SL LERK A++L+M+E FKSYHLAWARSSIEPAFKAA+DRRRLFPEGDLR+ LD FT+ ITKRQRNP G +APPSRSVRA NSTAHP LNKRSDVIR
Sbjct: 124 QKKAQKTTADGTTGGYFKGT--------TSLTSAQSSVAEASRQP-FRAADSFSGARKGYVFQKGPLGLGYYADRVQIRAAAAADAVVAASRAKSRGPEARGSGGRPETEGREK--------KTQTVDVAASLQKLKVFILKPKKAAKAASLMADLMEAHLRPENARMFFRALKPLAEEPAGEAALAAGEGGARAFRKLAQRASEWVGAPSEGVRAVTWELLFGLRHDTKTDDSFTFARAIKRLREAIEALGGVTGGGKATDGTXXXXXXXXXTGSAGGNRV-------SLSLERKTALILVMKEAFKSYHLAWARSSIEPAFKAAADRRRLFPEGDLRDTLDDFTDAITKRQRNPGGLMAPPSRSVRAHNSTAHPMLNKRSDVIR 485
BLAST of mRNA_H-elongata_contig19425.5397.1 vs. uniprot
Match: A0A7S3XWU9_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWU9_HETAK) HSP 1 Score: 55.5 bits (132), Expect = 1.530e-5 Identity = 46/128 (35.94%), Postives = 65/128 (50.78%), Query Frame = 1
Query: 598 SVDVLAAGHKLEALLLKPKKAAKAASLMADLMDAEMRPENAAMFFRAL-RPLAEEPAGDAALASGEGA-ARAFCLLVDRGADWLSNPSDRVRVVTWGLLFGLRHDVKTDDSFQFARAVKRLREAIEAL 975
SVDV A K++ L K KK KA+ L+ LM A + E A +FF + + P D L G A ARA + R D + + T L + D++TDD++QF+RA K LREA+ A+
Sbjct: 26 SVDVAQALQKIKPHLSKEKKFEKASGLLYQLMQAHLSEETADLFFDTIYESTLQAPGQDFYLRGGVRAPARALFDKLLRERDLFFLERQQYELETLRLRVAVAGDLRTDDTYQFSRAAKHLREALLAM 153
BLAST of mRNA_H-elongata_contig19425.5397.1 vs. uniprot
Match: A0A7S2HDH6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HDH6_9STRA) HSP 1 Score: 54.7 bits (130), Expect = 4.240e-5 Identity = 43/139 (30.94%), Postives = 64/139 (46.04%), Query Frame = 1
Query: 913 TDDSFQFARAVKRLREAIEALGDAAGGGDASDTISGGGEKMCAADEAASLPLERKRAIVLIMQETFKSYHLAWARSSIEPAFKAASDRRRLFPEGDLREALDGFTETITKRQRNPSGALAPPSRSVRALNSTAHPTLNK 1329
+DD++ FARA+KR+R A+E + D G + GGG C +R I+ ++ + WA+ IE A++ R F EG R LD TE + QR +R+VR ++S HP NK
Sbjct: 65 SDDTYTFARAMKRVRGAVEGVADKYGKDE------GGG---C-----------YRRLILACLETSLVKRSQLWAKPEIERTMTLAAENRLHFSEGAERNHLDSLTEKMRHGQRK-----VIVNRTVRVVDSITHPLRNK 178
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 66.2 |
| Seed ortholog evalue | 4.3e-08 |
| Seed eggNOG ortholog | 115417.EPrPW00000022853 |
| EggNOG OGs | 1MK8T@121069,2AWQU@1,2RZZD@2759 |
| Best tax level | Pythiales |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-19_003580.1 |
| Exons | 6 |
| Model size | 1350 |
| Cds size | 1350 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1622930105.5446754-CDS-H-elongata_contig19425:747..810 | 1622930105.5446754-CDS-H-elongata_contig19425:747..810 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 748..810 - |
| 1691679282.1563354-CDS-H-elongata_contig19425:747..810 | 1691679282.1563354-CDS-H-elongata_contig19425:747..810 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 748..810 - |
| 1622930105.5616744-CDS-H-elongata_contig19425:1047..1173 | 1622930105.5616744-CDS-H-elongata_contig19425:1047..1173 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 1048..1173 - |
| 1691679282.173523-CDS-H-elongata_contig19425:1047..1173 | 1691679282.173523-CDS-H-elongata_contig19425:1047..1173 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 1048..1173 - |
| 1622930105.5766704-CDS-H-elongata_contig19425:1429..1684 | 1622930105.5766704-CDS-H-elongata_contig19425:1429..1684 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 1430..1684 - |
| 1691679282.1870148-CDS-H-elongata_contig19425:1429..1684 | 1691679282.1870148-CDS-H-elongata_contig19425:1429..1684 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 1430..1684 - |
| 1622930105.5881734-CDS-H-elongata_contig19425:2114..2286 | 1622930105.5881734-CDS-H-elongata_contig19425:2114..2286 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 2115..2286 - |
| 1691679282.197372-CDS-H-elongata_contig19425:2114..2286 | 1691679282.197372-CDS-H-elongata_contig19425:2114..2286 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 2115..2286 - |
| 1622930105.602037-CDS-H-elongata_contig19425:2633..3106 | 1622930105.602037-CDS-H-elongata_contig19425:2633..3106 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 2634..3106 - |
| 1691679282.207337-CDS-H-elongata_contig19425:2633..3106 | 1691679282.207337-CDS-H-elongata_contig19425:2633..3106 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 2634..3106 - |
| 1622930105.6167572-CDS-H-elongata_contig19425:3163..3424 | 1622930105.6167572-CDS-H-elongata_contig19425:3163..3424 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 3164..3424 - |
| 1691679282.2226865-CDS-H-elongata_contig19425:3163..3424 | 1691679282.2226865-CDS-H-elongata_contig19425:3163..3424 | Himanthalia elongata Himel1 dioecious | CDS | H-elongata_contig19425 3164..3424 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19425.5397.1 >prot_H-elongata_contig19425.5397.1 ID=prot_H-elongata_contig19425.5397.1|Name=mRNA_H-elongata_contig19425.5397.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=450bp
ETKDQDTADADDGDPFGLGKIMANDKQKAPISDRYRVERRNEEEEEEEDP FGLGRIMAGDHKAEDSTGRESSRPSATVPTGQGRAKRKTALGGYFSESHM SSKARGDEISKRSTAVAEAARKVAFIRANSFKGARPGYMFQKGASGLGYY FDKVFSAREAREEMQRRAGEGEEESRSAARWEDAPGKVAAAKVGVARRPS VDVLAAGHKLEALLLKPKKAAKAASLMADLMDAEMRPENAAMFFRALRPL AEEPAGDAALASGEGAARAFCLLVDRGADWLSNPSDRVRVVTWGLLFGLR HDVKTDDSFQFARAVKRLREAIEALGDAAGGGDASDTISGGGEKMCAADE AASLPLERKRAIVLIMQETFKSYHLAWARSSIEPAFKAASDRRRLFPEGD LREALDGFTETITKRQRNPSGALAPPSRSVRALNSTAHPTLNKRSDVIR* back to topmRNA from alignment at H-elongata_contig19425:748..3424- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-elongata_contig19425.5397.1 ID=mRNA_H-elongata_contig19425.5397.1|Name=mRNA_H-elongata_contig19425.5397.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2677bp|location=Sequence derived from alignment at H-elongata_contig19425:748..3424- (Himanthalia elongata Himel1 dioecious) GAAACGAAGGATCAAGATACCGCCGACGCTGATGATGGAGACCCGTTCGG
CCTGGGCAAAATCATGGCCAACGACAAACAAAAAGCACCAATTTCGGATA
GATATCGCGTGGAGCGGAGAAACGAGGAAGAAGAGGAAGAGGAAGATCCC
TTTGGACTAGGCCGCATCATGGCGGGCGACCACAAGGCCGAGGATTCCAC
AGGAAGGGAAAGCAGTAGACCAAGCGCAACCGTGCCGACAGGGCAAGGAA
GAGCGAAACGCGTCAACAACCCCGAGCACTCTATCGGACCTGCCGCGGGC
CGAGCCAGGAAAGCTCAGAAGACTGCGCTCGGTGGTTACTTTTCGGAGTC
CCACATGTCCTCCAAGGCTCGGGGGGACGAAATAAGTAAAAGATCGACTG
CGGTGGCGGAGGCTGCCAGAAAAGTAGCTTTCATTCGCGCCAACTCCTTC
AAAGGCGCGCGGCCGGGCTACATGTTTCAGAAGGGAGCGTCAGGTCTCGG
ATACTACTTCGACAAGGTTTTTTCTGCCAGGGAAGCGCGCGAGGAAATGC
AGCGGCGTGCTGGTGAAGGGGAAGAGGAAAGCAGGTCGGCAGCACGATGG
GAAGACGCGCCGGGAAAAGTGGCGGCGGCGAAGGTTGGCGTGGCTAGAAG
GCCGTCCGTGGATGTTCTTGCCGCAGGGCACAAGCTGGAGGCATTGCTCT
TGAAGCCCAAGAAGGCGGCGAAGGCCGCGTCGCTCATGGCGGACTTGATG
GACGCCGAGATGCGCCCCGAGAATGCCGCGATGTTTTTCAGGTAAACGAC
GAGCTGTTGCAGCAGTAAATGCGTCAATCCGAGTAGCGGAAGTGCGTACG
GAGTCAGGCGTTCACGCGTACCTACGGTTGATCGAGAATGTGACGTGGGT
ACAGTATCTGGCGGCGTTCCTCTTTGGGGGGAAGGGGGGAAAGTACCACG
GTGACAACTCTGGACGCCCGCGGCCATCCTTCCAACGTAGAAGGATACAT
AAATGTCTCTCTTTTGGCCACTTGACAATGCTCGATTATCCTACAATGGA
GACCCCTCCCCCACACCCGCCCCCGCCGCCGCCACTTTGCCTACACTAAA
CCATGCGCACGGATTGTGAAATCCTCATGGATCCGAAGAGCCCTGAGACC
CTTGGCCGAAGAGCCAGCCGGCGACGCGGCACTCGCTTCGGGGGAAGGGG
CCGCTAGAGCTTTTTGTCTCCTGGTGGATAGAGGAGCGGACTGGCTGAGC
AACCCCTCAGACAGGGTGCGGGTGGTGACATGGGGGCTTCTGTTCGGGCT
TCGACACGACGTAAGTGGGAGTGAATCACACATGTTATGGTTCTGCCGCT
GTCCGTCTTGCCCGAATATACGTAGCCGCGGGGGTGGTGCTGTTTCCCAA
CGGTAGCACACAAGAGCCTGGTAGTGTAGTCACCGGCGGCTTGAGTCCTA
AAATTTATAAATGTTTTCGAGTATTTTGTTGAATGAAAGGGTCCGCTTCA
TGCTGAAAGCCGTGCAGAACCCGGGGATGAGCCTGTACGCCCACATGAAC
CAGAGAATCGCAAAGAGTAGGTGTCTACTTTTGCTTGCTGGAGCGTCTGT
TTTGGGGTCGTTTCTCACTTAAGCCCTCCCCGTGGTTGTCACCCCGGCCG
CTTGAGGATCGGTTCCGGTTCCGGTTCCCTTCTTCATGTTTTTTCATGAG
TGCTGCCTTTCTGCGTTATAAAAATTGTACTGCGTTCCAGGTGAAAACCG
ACGATTCCTTCCAGTTTGCCCGTGCCGTGAAGCGCCTGCGCGAAGCGATA
GAAGCTTTGGGAGATGCTGCCGGGGGAGGTGACGCCTCGGATACTATCAG
CGGCGGCGGTGAAAAAATGTGCGCGGCTGACGAAGCGGCGTCTCTCCCCC
TGGAGAGAAAGCGGGCCATCGTGTTGATCATGCAGGAGACGTTCAAGAGC
TACCACCTGGCGTGGGCGAGGTCGTCCATCGAGCCCGCCTTTAAGGTGGT
GAAACCTTTCGACCGAGGACGCGAATCACCGAGGGACCCCCCTAATGTTT
GTTTTCCTTCTTCTGCTGCACCCACTCTACTAATTTTTCTGCGAATACTC
GATCCACCTACCTACCTATCTATCTTGTCTGCCGAAAGCCTCCGGTTGTG
CGAGTGCATCGTGATCACGCAGAAGCCGCTGGTGGGAATCGAAGGCAAAT
CACGCCAATTCGATCTCTTACTCCCGGTTGTTTTTGAATCTCTCACTCCA
GGCGGCATCCGACCGAAGAAGGCTGTTCCCCGAGGGCGACCTGCGCGAGG
CGCTCGATGGCTTTACGGAGACGATCACCAAGAGGCAGCGGAATCCCAGC
GGGGCCTTAGCGCCGCCGTCCAGATCGGTGCGTGCCGTGGCATCTTTACC
TTTTTCTGTTGTGATTGAAAATTGATTGCGATTTGCCTCGTTTTCATCCC
ACCGCTTCGGCCGGTTTCAAGTTAAGGTGTGCACGCAGACAATGTATTTT
GGCTTGGTACGATATGGCTTAAATATATATATATACATATTTTATATCAT
CCCCTTCCTCTGAATGCATCTCGTATCCTTGCGGATATCCCCGGTCTTTA
ACCTCCGCTGACAGGTTCGCGCGCTCAACAGCACGGCGCACCCGACGCTC
AACAAGCGGTCGGACGTGATCCGCTGA back to topCoding sequence (CDS) from alignment at H-elongata_contig19425:748..3424- >mRNA_H-elongata_contig19425.5397.1 ID=mRNA_H-elongata_contig19425.5397.1|Name=mRNA_H-elongata_contig19425.5397.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2700bp|location=Sequence derived from alignment at H-elongata_contig19425:748..3424- (Himanthalia elongata Himel1 dioecious) GAAACGAAGGATCAAGATACCGCCGACGCTGATGATGGAGACCCGTTCGG CCTGGGCAAAATCATGGCCAACGACAAACAAAAAGCACCAATTTCGGATA GATATCGCGTGGAGCGGAGAAACGAGGAAGAAGAGGAAGAGGAAGATCCC TTTGGACTAGGCCGCATCATGGCGGGCGACCACAAGGCCGAGGATTCCAC AGGAAGGGAAAGCAGTAGACCAAGCGCAACCGTGCCGACAGGGCAAGGAA GAGCGAAACGCGAAACGAAGGATCAAGATACCGCCGACGCTGATGATGGA GACCCGTTCGGCCTGGGCAAAATCATGGCCAACGACAAACAAAAAGCACC AATTTCGGATAGATATCGCGTGGAGCGGAGAAACGAGGAAGAAGAGGAAG AGGAAGATCCCTTTGGACTAGGCCGCATCATGGCGGGCGACCACAAGGCC GAGGATTCCACAGGAAGGGAAAGCAGTAGACCAAGCGCAACCGTGCCGAC AGGGCAAGGAAGAGCGAAACGCAAGACTGCGCTCGGTGGTTACTTTTCGG AGTCCCACATGTCCTCCAAGGCTCGGGGGGACGAAATAAGTAAAAGATCG ACTGCGGTGGCGGAGGCTGCCAGAAAAGTAGCTTTCATTCGCGCCAACTC CTTCAAAGGCGCGCGGCCGGGCTACATGTTTCAGAAGGGAGCGTCAGGTC TCGGATACTACTTCGACAAGGTTTTTTCTGCCAGGGAAGCGCGCGAGGAA ATGCAGCGGCGTGCTGGTGAAGGGGAAGAGGAAAGCAGGTCGGCAGCACG ATGGGAAGACGCGCCGGGAAAAGTGGCGGCGGCGAAGGTTGGCGTGGCTA GAAGGCCGTCCGTGGATGTTCTTGCCGCAGGGCACAAGCTGGAGGCATTG CTCTTGAAGCCCAAGAAGGCGGCGAAGGCCGCGTCGCTCATGGCGGACTT GATGGACGCCGAGATGCGCCCCGAGAATGCCGCGATGTTTTTCAGAAGAC TGCGCTCGGTGGTTACTTTTCGGAGTCCCACATGTCCTCCAAGGCTCGGG GGGACGAAATAAGTAAAAGATCGACTGCGGTGGCGGAGGCTGCCAGAAAA GTAGCTTTCATTCGCGCCAACTCCTTCAAAGGCGCGCGGCCGGGCTACAT GTTTCAGAAGGGAGCGTCAGGTCTCGGATACTACTTCGACAAGGTTTTTT CTGCCAGGGAAGCGCGCGAGGAAATGCAGCGGCGTGCTGGTGAAGGGGAA GAGGAAAGCAGGTCGGCAGCACGATGGGAAGACGCGCCGGGAAAAGTGGC GGCGGCGAAGGTTGGCGTGGCTAGAAGGCCGTCCGTGGATGTTCTTGCCG CAGGGCACAAGCTGGAGGCATTGCTCTTGAAGCCCAAGAAGGCGGCGAAG GCCGCGTCGCTCATGGCGGACTTGATGGACGCCGAGATGCGCCCCGAGAA TGCCGCGATGTTTTTCAGAGCCCTGAGACCCTTGGCCGAAGAGCCAGCCG GCGACGCGGCACTCGCTTCGGGGGAAGGGGCCGCTAGAGCTTTTTGTCTC CTGGTGGATAGAGGAGCGGACTGGCTGAGCAACCCCTCAGACAGGGTGCG GGTGGTGACATGGGGGCTTCTGTTCGGGCTTCGACACGACAGCCCTGAGA CCCTTGGCCGAAGAGCCAGCCGGCGACGCGGCACTCGCTTCGGGGGAAGG GGCCGCTAGAGCTTTTTGTCTCCTGGTGGATAGAGGAGCGGACTGGCTGA GCAACCCCTCAGACAGGGTGCGGGTGGTGACATGGGGGCTTCTGTTCGGG CTTCGACACGACGTGAAAACCGACGATTCCTTCCAGTTTGCCCGTGCCGT GAAGCGCCTGCGCGAAGCGATAGAAGCTTTGGGAGATGCTGCCGGGGGAG GTGACGCCTCGGATACTATCAGCGGCGGCGGTGAAAAAATGTGCGCGGCT GACGAAGCGGCGTCTCTCCCCCTGGAGAGAAAGCGGGCCATCGTGTTGAT CATGCAGGAGACGTTCAAGAGCTACCACCTGGCGTGGGCGAGGTCGTCCA TCGAGCCCGCCTTTAAGGTGAAAACCGACGATTCCTTCCAGTTTGCCCGT GCCGTGAAGCGCCTGCGCGAAGCGATAGAAGCTTTGGGAGATGCTGCCGG GGGAGGTGACGCCTCGGATACTATCAGCGGCGGCGGTGAAAAAATGTGCG CGGCTGACGAAGCGGCGTCTCTCCCCCTGGAGAGAAAGCGGGCCATCGTG TTGATCATGCAGGAGACGTTCAAGAGCTACCACCTGGCGTGGGCGAGGTC GTCCATCGAGCCCGCCTTTAAGGCGGCATCCGACCGAAGAAGGCTGTTCC CCGAGGGCGACCTGCGCGAGGCGCTCGATGGCTTTACGGAGACGATCACC AAGAGGCAGCGGAATCCCAGCGGGGCCTTAGCGCCGCCGTCCAGATCGGC GGCATCCGACCGAAGAAGGCTGTTCCCCGAGGGCGACCTGCGCGAGGCGC TCGATGGCTTTACGGAGACGATCACCAAGAGGCAGCGGAATCCCAGCGGG GCCTTAGCGCCGCCGTCCAGATCGGTTCGCGCGCTCAACAGCACGGCGCA CCCGACGCTCAACAAGCGGTCGGACGTGATCCGCTGAGTTCGCGCGCTCA ACAGCACGGCGCACCCGACGCTCAACAAGCGGTCGGACGTGATCCGCTGA back to top
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