mRNA_H-elongata_contig194214.5396.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: D8LHX0_ECTSI (VOC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHX0_ECTSI) HSP 1 Score: 142 bits (359), Expect = 2.200e-41 Identity = 65/82 (79.27%), Postives = 73/82 (89.02%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVDEY 270
DGD VPVPHTGLAMTV+QFH+F RLR + V+F++EPHLRFK Q GEQWTMFFKDPSGNNLEFKAMTNP NLFA+YNVDE+
Sbjct: 87 DGDRVPVPHTGLAMTVEQFHQFAGRLRKHGVEFVVEPHLRFKD-QPGEQWTMFFKDPSGNNLEFKAMTNPDNLFARYNVDEF 167
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A7S4FTF3_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4FTF3_9EUGL) HSP 1 Score: 132 bits (331), Expect = 2.370e-37 Identity = 61/81 (75.31%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVDE 267
DGD VPVPH G+A+TV QFH DRLR +N+ FIIEPHLRF +GQ GEQWTMFF+DPSGN+LEFKAMTNP NLF KYNV E
Sbjct: 88 DGDEVPVPHFGIALTVDQFHTLSDRLRQHNISFIIEPHLRF-EGQPGEQWTMFFRDPSGNHLEFKAMTNPGNLFVKYNVAE 167
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: B7G741_PHATC (Predicted protein n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G741_PHATC) HSP 1 Score: 128 bits (321), Expect = 1.500e-35 Identity = 61/79 (77.22%), Postives = 67/79 (84.81%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNV 261
DGD VPVPH GLA+TV+QFH +R+RS V FIIEPHLRFK G GEQ+TMFFKDPSGNNLEFKAMT+P NLFAKYNV
Sbjct: 111 DGDEVPVPHVGLALTVEQFHELAERVRSKGVNFIIEPHLRFK-GMPGEQYTMFFKDPSGNNLEFKAMTHPENLFAKYNV 188
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A836C946_9STRA (Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C946_9STRA) HSP 1 Score: 124 bits (312), Expect = 2.030e-34 Identity = 59/79 (74.68%), Postives = 66/79 (83.54%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNV 261
DGD VPVPH GLAMTV +FH F RL+ + +KFIIEPHLRFK G+ GEQ+TMFFKDPSGNNLEFKAMT+P NLFA Y V
Sbjct: 85 DGDEVPVPHFGLAMTVDEFHAFSQRLKEHGIKFIIEPHLRFK-GEPGEQYTMFFKDPSGNNLEFKAMTHPENLFAAYKV 162
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A7S0UNN6_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0UNN6_9CHLO) HSP 1 Score: 124 bits (310), Expect = 2.170e-34 Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVD 264
DGD VPVPH GL ++V QFH R + +NVKF+IEPHLRF +G+ GEQWTMFFKDPSGN LEFKAMTNP+NLFAKY V+
Sbjct: 72 DGDAVPVPHFGLVLSVSQFHDLAARFKQHNVKFVIEPHLRF-EGKPGEQWTMFFKDPSGNALEFKAMTNPNNLFAKYYVE 150
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A5A8DDG7_CAFRO (VOC domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DDG7_CAFRO) HSP 1 Score: 124 bits (310), Expect = 2.230e-34 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVDE 267
DGD VPVPH G A++V+ FH RLR + KFIIEPHLRFK GQ GEQ+TMFFKDPSGN+LEFKAMTNP+NLFAKY+V++
Sbjct: 72 DGDEVPVPHFGAALSVEDFHALAKRLRQHKTKFIIEPHLRFK-GQPGEQYTMFFKDPSGNSLEFKAMTNPNNLFAKYHVED 151
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A1Z5KFB7_FISSO (VOC domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KFB7_FISSO) HSP 1 Score: 125 bits (314), Expect = 2.650e-34 Identity = 59/79 (74.68%), Postives = 67/79 (84.81%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNV 261
DGD VPVPH GLA+TV+QFH +R+R ++FIIEPHLRFK G GEQ+TMFFKDPSGNNLEFKAMT+P NLFAKYNV
Sbjct: 128 DGDEVPVPHYGLALTVEQFHALAERVRKAGIQFIIEPHLRFK-GMPGEQYTMFFKDPSGNNLEFKAMTHPDNLFAKYNV 205
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: D8UCG2_VOLCA (VOC domain-containing protein n=3 Tax=Volvox TaxID=3066 RepID=D8UCG2_VOLCA) HSP 1 Score: 122 bits (306), Expect = 7.370e-34 Identity = 56/81 (69.14%), Postives = 67/81 (82.72%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVDE 267
DGD VPVPH G A++V+QFH+ +RL+ +VKF+IEPHLRF QG+ GEQWT+FF DPSGN LEFKAMTNP NLFAKY V +
Sbjct: 65 DGDPVPVPHFGAALSVEQFHKLAERLKEKDVKFVIEPHLRF-QGKPGEQWTLFFTDPSGNALEFKAMTNPENLFAKYTVTD 144
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: B5YMI5_THAPS (Glyoxylase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YMI5_THAPS) HSP 1 Score: 122 bits (305), Expect = 9.300e-34 Identity = 58/79 (73.42%), Postives = 63/79 (79.75%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNV 261
DGD VPVPH GLA+TV +FH +R++ V FIIEPHLRFK G GEQWTMFFKDPSGNNLEFKAMT NLFAKYNV
Sbjct: 61 DGDEVPVPHAGLALTVGEFHALAERVKKAGVHFIIEPHLRFK-GMPGEQWTMFFKDPSGNNLEFKAMTKVENLFAKYNV 138
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Match: A0A5A8CKG4_CAFRO (VOC domain-containing protein n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CKG4_CAFRO) HSP 1 Score: 124 bits (310), Expect = 9.320e-34 Identity = 58/81 (71.60%), Postives = 68/81 (83.95%), Query Frame = 1
Query: 25 DGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKQGQAGEQWTMFFKDPSGNNLEFKAMTNPSNLFAKYNVDE 267
DGD VPVPH G A++V+ FH RLR + KFIIEPHLRFK GQ GEQ+TMFFKDPSGN+LEFKAMTNP+NLFAKY+V++
Sbjct: 123 DGDEVPVPHFGAALSVEDFHALAKRLRQHKTKFIIEPHLRFK-GQPGEQYTMFFKDPSGNSLEFKAMTNPNNLFAKYHVED 202 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194214.5396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig194214.5396.1 >prot_H-elongata_contig194214.5396.1 ID=prot_H-elongata_contig194214.5396.1|Name=mRNA_H-elongata_contig194214.5396.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp MAHASSKSDGDTVPVPHTGLAMTVKQFHRFVDRLRSYNVKFIIEPHLRFKback to top mRNA from alignment at H-elongata_contig194214:218..891+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig194214.5396.1 ID=mRNA_H-elongata_contig194214.5396.1|Name=mRNA_H-elongata_contig194214.5396.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=674bp|location=Sequence derived from alignment at H-elongata_contig194214:218..891+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig194214:218..891+ >mRNA_H-elongata_contig194214.5396.1 ID=mRNA_H-elongata_contig194214.5396.1|Name=mRNA_H-elongata_contig194214.5396.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig194214:218..891+ (Himanthalia elongata Himel1 dioecious)back to top |