mRNA_H-elongata_contig1942.5395.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 116 bits (290), Expect = 2.110e-28 Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
+RAL+G+L+W++++TRPDIANA+RA R+ HW+A L I Y T G+ F RG SG SL ADADYA+ + DRRSV G V AI W T+KCVT +T + EYVA+ + K+ +F R
Sbjct: 163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 293
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE) HSP 1 Score: 112 bits (280), Expect = 4.320e-28 Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G++MW+S +RPDI+ A+RA RH+H RHWKA+++I AY+ T+++G+ + RGSGL L V DA YA A DRRSV G+A +G T I T+ V+ ++ E EY+A K+A+F R
Sbjct: 82 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 208
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.180e-27 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G LMW + TRPDIA AL A R++H T R WKAL++I +Y+NAT ++G+ +VRGSGL L V DA YA RRSV G+AV +G T + T++ V+ +T E EY+A K+A+F R
Sbjct: 1027 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVR 1154
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE) HSP 1 Score: 116 bits (291), Expect = 1.200e-27 Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G LMW + TRPDIA AL A R++H T R WKAL++I +Y+NAT ++G+ +VRGSGL L V DA YA RRSV G+AV +G T + T++ V+ +T E EY+A K+A+F R
Sbjct: 1580 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVR 1707
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 116 bits (290), Expect = 1.530e-27 Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
+RAL+G+L+W++++TRPDIANA+RA R+ HW+A L I Y T G+ F RG SG SL ADADYA+ + DRRSV G V AI W T+KCVT +T + EYVA+ + K+ +F R
Sbjct: 467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 597
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE) HSP 1 Score: 113 bits (282), Expect = 2.910e-27 Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G++MW+S TRPDI A+RA RH+H RHWKA+++I AY+ T+++G+ + RGSGL L V DA YA A DRRSV G+A +G T I T+ V+ ++ E EY+A K+A+F R
Sbjct: 163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 289
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE) HSP 1 Score: 112 bits (279), Expect = 1.520e-26 Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 1
Query: 16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
+RALVG+L+W++++TRPDIAN++RA R+S HWKA L I Y T G+ F G SG SL +ADYA+ + DRRSV G V AI W T+KCVT +T + EYVA+ + K+ +F R
Sbjct: 215 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 345
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.470e-26 Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G++MW+S +RPDI+ A+RA RH+H RHWKA+++I AY+ T+++G+ + RGSGL L V DA YA A DRRSV G+A +G T I T+ V+ ++ E EY+A K+A+F R
Sbjct: 291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 417
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE) HSP 1 Score: 112 bits (281), Expect = 2.660e-26 Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 1
Query: 16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
+R LVG+L+W++++TRPDIAN++RA R+S HWKA L I Y T +G+ F RG SG +L DADYA+ + DRRSV G V AI W T+ CVT +T ++EYVA+ + K+ +F R
Sbjct: 534 FRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLR 664
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE) HSP 1 Score: 112 bits (280), Expect = 2.860e-26 Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query: 19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
R +G++MW+S +RPDI+ A+RA RH+H RHWKA+++I AY+ T+++G+ + RGSGL L V DA YA A DRRSV G+A +G T I T+ V+ ++ E EY+A K+A+F R
Sbjct: 378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 504 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig1942.5395.1 >prot_H-elongata_contig1942.5395.1 ID=prot_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp DEFEDYRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAback to top mRNA from alignment at H-elongata_contig1942:2985..3386- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig1942.5395.1 ID=mRNA_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig1942:2985..3386- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig1942:2985..3386- >mRNA_H-elongata_contig1942.5395.1 ID=mRNA_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig1942:2985..3386- (Himanthalia elongata Himel1 dioecious)back to top |