mRNA_H-elongata_contig1942.5395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig1942.5395.1
Unique NamemRNA_H-elongata_contig1942.5395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 2.110e-28
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            +RAL+G+L+W++++TRPDIANA+RA  R+       HW+A L I  Y   T   G+ F RG  SG SL   ADADYA+ + DRRSV G  V     AI W   T+KCVT +T + EYVA+ +  K+ +F R
Sbjct:  163 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 293          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5KTI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTI8_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 4.320e-28
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G++MW+S  +RPDI+ A+RA  RH+H    RHWKA+++I AY+  T+++G+ + RGSGL L V  DA YA A  DRRSV G+A  +G T I     T+  V+ ++ E EY+A     K+A+F R
Sbjct:   82 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 208          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS3_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.180e-27
Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G LMW +  TRPDIA AL A  R++H  T R WKAL++I +Y+NAT ++G+ +VRGSGL L V  DA YA     RRSV G+AV +G T +     T++ V+ +T E EY+A     K+A+F R
Sbjct: 1027 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVR 1154          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5L175_9PHAE (Uncharacterized protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L175_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.200e-27
Identity = 60/128 (46.88%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G LMW +  TRPDIA AL A  R++H  T R WKAL++I +Y+NAT ++G+ +VRGSGL L V  DA YA     RRSV G+AV +G T +     T++ V+ +T E EY+A     K+A+F R
Sbjct: 1580 RQAIGCLMWPATFTRPDIATALNAVQRNAHAPTMRDWKALVQILSYLNATMDLGITYVRGSGLDLEVYVDASYADRDTGRRSVTGIAVTVGGTVVSHASKTQRIVSLSTSEAEYIAAGEGVKEALFVR 1707          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 1.530e-27
Identity = 61/131 (46.56%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            +RAL+G+L+W++++TRPDIANA+RA  R+       HW+A L I  Y   T   G+ F RG  SG SL   ADADYA+ + DRRSV G  V     AI W   T+KCVT +T + EYVA+ +  K+ +F R
Sbjct:  467 FRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 597          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5L589_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L589_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.910e-27
Identity = 58/128 (45.31%), Postives = 82/128 (64.06%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G++MW+S  TRPDI  A+RA  RH+H    RHWKA+++I AY+  T+++G+ + RGSGL L V  DA YA A  DRRSV G+A  +G T I     T+  V+ ++ E EY+A     K+A+F R
Sbjct:  163 REAIGSMMWVSTFTRPDICFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYKRGSGLGLEVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 289          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JRZ9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRZ9_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.520e-26
Identity = 60/131 (45.80%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            +RALVG+L+W++++TRPDIAN++RA  R+S      HWKA L I  Y   T   G+ F  G  SG SL    +ADYA+ + DRRSV G  V     AI W   T+KCVT +T + EYVA+ +  K+ +F R
Sbjct:  215 FRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSILGYAVRTSSFGISFQSGTVSGFSLITFVNADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLR 345          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JCG0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCG0_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.470e-26
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G++MW+S  +RPDI+ A+RA  RH+H    RHWKA+++I AY+  T+++G+ + RGSGL L V  DA YA A  DRRSV G+A  +G T I     T+  V+ ++ E EY+A     K+A+F R
Sbjct:  291 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 417          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5JWA6_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWA6_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 2.660e-26
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 1
Query:   16 YRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRG--SGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            +R LVG+L+W++++TRPDIAN++RA  R+S      HWKA L I  Y   T  +G+ F RG  SG +L    DADYA+ + DRRSV G  V     AI W   T+ CVT +T ++EYVA+ +  K+ +F R
Sbjct:  534 FRGLVGSLLWIALLTRPDIANSVRAVARYSSAPKLIHWKAALSILGYAFRTSSLGISFQRGTVSGFTLIAFVDADYASRAADRRSVSGGVVMCAGGAIAWFSKTQTCVTLSTTQSEYVAMADMGKEILFLR 664          
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Match: A0A6H5KGX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGX6_9PHAE)

HSP 1 Score: 112 bits (280), Expect = 2.860e-26
Identity = 57/128 (44.53%), Postives = 83/128 (64.84%), Query Frame = 1
Query:   19 RALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIAAYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTAIRWKRSTEKCVTTATCETEYVALCNAAKDAIFER 402
            R  +G++MW+S  +RPDI+ A+RA  RH+H    RHWKA+++I AY+  T+++G+ + RGSGL L V  DA YA A  DRRSV G+A  +G T I     T+  V+ ++ E EY+A     K+A+F R
Sbjct:  378 REAIGSMMWVSTFSRPDISFAVRAVARHAHAPAERHWKAIVKILAYLKETRDLGITYERGSGLGLAVYVDASYADAE-DRRSVSGLATTVGGTVISHGSKTQAIVSLSSTEAEYIAAGEGVKEALFVR 504          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig1942.5395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE2.110e-2846.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KTI8_9PHAE4.320e-2844.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JKS3_9PHAE1.180e-2746.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L175_9PHAE1.200e-2746.88Uncharacterized protein n=9 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JR13_9PHAE1.530e-2746.56Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5L589_9PHAE2.910e-2745.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JRZ9_9PHAE1.520e-2645.80Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JCG0_9PHAE2.470e-2644.53Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWA6_9PHAE2.660e-2645.04Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KGX6_9PHAE2.860e-2644.53Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig1942contigH-elongata_contig1942:2985..3386 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score100.5
Seed ortholog evalue6.2e-19
Seed eggNOG ortholog400682.PAC_15712907
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3A5XY@33154,3C0JZ@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.4012508-CDS-H-elongata_contig1942:2984..33861622930105.4012508-CDS-H-elongata_contig1942:2984..3386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1942 2985..3386 -
1691679282.10772-CDS-H-elongata_contig1942:2984..33861691679282.10772-CDS-H-elongata_contig1942:2984..3386Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig1942 2985..3386 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig1942.5395.1prot_H-elongata_contig1942.5395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig1942 2985..3386 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig1942.5395.1

>prot_H-elongata_contig1942.5395.1 ID=prot_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=134bp
DEFEDYRALVGNLMWMSVMTRPDIANALRACVRHSHNHTARHWKALLRIA
AYVNATKEIGLRFVRGSGLSLFVLADADYAAASNDRRSVFGVAVRLGDTA
IRWKRSTEKCVTTATCETEYVALCNAAKDAIFER
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mRNA from alignment at H-elongata_contig1942:2985..3386-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig1942.5395.1 ID=mRNA_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=402bp|location=Sequence derived from alignment at H-elongata_contig1942:2985..3386- (Himanthalia elongata Himel1 dioecious)
GATGAGTTTGAGGATTACCGTGCCCTTGTAGGGAATCTGATGTGGATGTC GGTAATGACGAGACCGGACATTGCGAATGCTCTCCGAGCTTGTGTGCGTC ATAGCCATAACCATACCGCGCGACATTGGAAGGCACTTCTACGAATAGCC GCGTACGTGAATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTGGTTC TGGCCTGAGCCTTTTTGTGCTTGCAGATGCCGATTACGCGGCGGCATCAA ATGATAGGCGGTCCGTGTTTGGTGTAGCAGTACGTCTGGGTGACACAGCA ATACGTTGGAAACGTAGTACAGAGAAATGTGTGACGACTGCAACCTGTGA GACTGAGTACGTTGCCCTTTGTAATGCAGCAAAAGATGCGATATTTGAGA GA
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Coding sequence (CDS) from alignment at H-elongata_contig1942:2985..3386-

>mRNA_H-elongata_contig1942.5395.1 ID=mRNA_H-elongata_contig1942.5395.1|Name=mRNA_H-elongata_contig1942.5395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=804bp|location=Sequence derived from alignment at H-elongata_contig1942:2985..3386- (Himanthalia elongata Himel1 dioecious)
GATGAGTTTGAGGATTACCGTGCCCTTGTAGGGAATCTGATGTGGATGTC
GGTAATGACGAGACCGGACATTGCGAATGCTCTCCGAGCTTGTGTGCGTC
ATAGCCATAACCATACCGCGCGACATTGGAAGGCACTTCTACGAATAGCC
GCGTACGTGAATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTGGTTC
TGGCCTGAGCCTTTTTGTGCTTGCAGATGCCGATTACGCGGCGGCATCAA
ATGATAGGCGGTCCGTGTTTGGTGTAGCAGTACGTCTGGGTGACACAGCA
ATACGTTGGAAACGTAGTACAGAGAAATGTGTGACGACTGCAACCTGTGA
GACTGAGTACGTTGCCCTTTGTAATGCAGCAAAAGATGCGATATTTGAGA
GAGATGAGTTTGAGGATTACCGTGCCCTTGTAGGGAATCTGATGTGGATG
TCGGTAATGACGAGACCGGACATTGCGAATGCTCTCCGAGCTTGTGTGCG
TCATAGCCATAACCATACCGCGCGACATTGGAAGGCACTTCTACGAATAG
CCGCGTACGTGAATGCAACGAAAGAGATTGGTTTAAGGTTCGTGCGTGGT
TCTGGCCTGAGCCTTTTTGTGCTTGCAGATGCCGATTACGCGGCGGCATC
AAATGATAGGCGGTCCGTGTTTGGTGTAGCAGTACGTCTGGGTGACACAG
CAATACGTTGGAAACGTAGTACAGAGAAATGTGTGACGACTGCAACCTGT
GAGACTGAGTACGTTGCCCTTTGTAATGCAGCAAAAGATGCGATATTTGA
GAGA
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