mRNA_H-elongata_contig194058.5391.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig194058.5391.1
Unique NamemRNA_H-elongata_contig194058.5391.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig194058.5391.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig194058contigH-elongata_contig194058:729..1055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size315
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.9835029-UTR-H-elongata_contig194058:728..7401622930104.9835029-UTR-H-elongata_contig194058:728..740Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194058 729..740 +
1691679281.9632735-UTR-H-elongata_contig194058:728..7401691679281.9632735-UTR-H-elongata_contig194058:728..740Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig194058 729..740 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930105.0005383-CDS-H-elongata_contig194058:740..10551622930105.0005383-CDS-H-elongata_contig194058:740..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194058 741..1055 +
1691679281.9714115-CDS-H-elongata_contig194058:740..10551691679281.9714115-CDS-H-elongata_contig194058:740..1055Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig194058 741..1055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig194058.5391.1prot_H-elongata_contig194058.5391.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig194058 741..1055 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig194058.5391.1

>prot_H-elongata_contig194058.5391.1 ID=prot_H-elongata_contig194058.5391.1|Name=mRNA_H-elongata_contig194058.5391.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MKMVIDIGTLSEAWRALNMIAAETEEAAYDREKREFELLEIGASEPVAEY
FARVNVILAKLIRHHVATPARDVKRGVLSSLTSRFPDEVRMYALKCELDL
RDLED
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mRNA from alignment at H-elongata_contig194058:729..1055+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig194058.5391.1 ID=mRNA_H-elongata_contig194058.5391.1|Name=mRNA_H-elongata_contig194058.5391.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=327bp|location=Sequence derived from alignment at H-elongata_contig194058:729..1055+ (Himanthalia elongata Himel1 dioecious)
GAAAATGAAATAATGAAAATGGTAATAGACATTGGGACTCTGTCTGAGGC
ATGGCGTGCATTGAACATGATAGCTGCTGAAACAGAGGAAGCAGCATACG
ACCGAGAAAAAAGGGAATTCGAGTTGCTTGAAATAGGAGCCAGTGAGCCT
GTCGCTGAATATTTTGCTCGCGTGAATGTGATTTTGGCGAAATTGATCCG
CCACCACGTGGCAACACCCGCCCGTGATGTAAAGCGTGGGGTACTGAGTA
GTCTGACGTCCCGCTTCCCCGATGAAGTCCGTATGTATGCATTGAAATGT
GAACTTGACTTAAGAGACCTGGAAGAT
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Coding sequence (CDS) from alignment at H-elongata_contig194058:729..1055+

>mRNA_H-elongata_contig194058.5391.1 ID=mRNA_H-elongata_contig194058.5391.1|Name=mRNA_H-elongata_contig194058.5391.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig194058:729..1055+ (Himanthalia elongata Himel1 dioecious)
ATGAAAATGGTAATAGACATTGGGACTCTGTCTGAGGCATGGCGTGCATT
GAACATGATAGCTGCTGAAACAGAGGAAGCAGCATACGACCGAGAAAAAA
GGGAATTCGAGTTGCTTGAAATAGGAGCCAGTGAGCCTGTCGCTGAATAT
TTTGCTCGCGTGAATGTGATTTTGGCGAAATTGATCCGCCACCACGTGGC
AACACCCGCCCGTGATGTAAAGCGTGGGGTACTGAGTAGTCTGACGTCCC
GCTTCCCCGATGAAGTCCGTATGTATGCATTGAAATGTGAACTTGACTTA
AGAGACCTGGAAGATATGAAAATGGTAATAGACATTGGGACTCTGTCTGA
GGCATGGCGTGCATTGAACATGATAGCTGCTGAAACAGAGGAAGCAGCAT
ACGACCGAGAAAAAAGGGAATTCGAGTTGCTTGAAATAGGAGCCAGTGAG
CCTGTCGCTGAATATTTTGCTCGCGTGAATGTGATTTTGGCGAAATTGAT
CCGCCACCACGTGGCAACACCCGCCCGTGATGTAAAGCGTGGGGTACTGA
GTAGTCTGACGTCCCGCTTCCCCGATGAAGTCCGTATGTATGCATTGAAA
TGTGAACTTGACTTAAGAGACCTGGAAGAT
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