mRNA_H-elongata_contig19398.5389.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: D6C783_HELAN (Copia-like retrotransposon n=2 Tax=Helianthus annuus TaxID=4232 RepID=D6C783_HELAN) HSP 1 Score: 55.8 bits (133), Expect = 3.320e-6 Identity = 46/148 (31.08%), Postives = 67/148 (45.27%), Query Frame = 1
Query: 10 HRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVG-------------AACGGRKKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLI 414
H R+C +R + G + + +A V +V + A VG AC G W DSGAT H+ R TY G + ADG+ + V G G + ++ + G V + DV HVPGI++ L+S K KL+I
Sbjct: 266 HYARECSQR--KSGSTVGSTSAIDVEKVTNLVANVGLGEVNMLSQYTRIVACRG----WFLDSGATVHVCGNRGSFLTYAPVPQGTVVVCADGHRVEVRGKGTVRLNF-RDGQV---VTLQDVLHVPGITKGLVSADKFDRNGYKLVI 403
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A1S4DER3_TOBAC (uncharacterized protein LOC107828953 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4DER3_TOBAC) HSP 1 Score: 55.5 bits (132), Expect = 3.820e-6 Identity = 37/128 (28.91%), Postives = 69/128 (53.91%), Query Frame = 1
Query: 1 SLEHRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVGAACG--GRKKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLST 378
++ H+ +C + +K AN+ E+ + AM+ + C G +EW DSGAT H+ + ++Y P T+ +A+ T ++G G+I + + ++K V ++DV HVPG+ ++L+ST
Sbjct: 274 NVGHKAAECRAQKKDKKKSQANMIEKN-DEIDDLCAMI-SECNLVGNPREWWIDSGATRHICANKELFTSYVPVGPNETVFMANFATAKIEGTGKITLKMT----SSKIVTLNDVLHVPGMRKNLVST 395
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A3C414_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C414_HIBSY) HSP 1 Score: 53.5 bits (127), Expect = 2.060e-5 Identity = 29/100 (29.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+I + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 228 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKI---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVGQLTSSGHYVLFGPQDMKV 324
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: B2BXI0_ARALL (Gag-pol polymerase (Fragment) n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=B2BXI0_ARALL) HSP 1 Score: 53.1 bits (126), Expect = 2.790e-5 Identity = 30/99 (30.30%), Postives = 51/99 (51.52%), Query Frame = 1
Query: 145 WESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAVLG 441
W DSGAT H+ R TY+ G + + + +T P+ G G++ ++ + K + ++DV HVPGI ++L+S + + +Y DK VL
Sbjct: 267 WWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGRGKVVLEFS----SGKTLDLNDVIHVPGIRKNLVSG-SVLNKCGFKQVYESDKYVLS 360
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2ZIH7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZIH7_HIBSY) HSP 1 Score: 53.1 bits (126), Expect = 2.840e-5 Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPGI ++LLS + +L +D V
Sbjct: 295 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGIKKNLLSMAQLTSSGHYVLFGPQDVKV 391
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X170_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X170_HIBSY) HSP 1 Score: 52.8 bits (125), Expect = 3.860e-5 Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 317 KNDWIVDSGCSNHMTGNKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 413
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2YQM6_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YQM6_HIBSY) HSP 1 Score: 52.4 bits (124), Expect = 5.180e-5 Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 246 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 342
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X3R2_HIBSY (Tir-nbs resistance protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X3R2_HIBSY) HSP 1 Score: 52.4 bits (124), Expect = 5.190e-5 Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 277 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 373
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A3A2M5_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A2M5_HIBSY) HSP 1 Score: 52.4 bits (124), Expect = 5.220e-5 Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 169 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 265
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X327_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X327_HIBSY) HSP 1 Score: 52.4 bits (124), Expect = 5.240e-5 Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query: 136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
K +W DSG + HM+ + + + G + AD + LP+ G+ + P + T +V++ DV HVPG+ ++LLS + +L +D V
Sbjct: 247 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig19398.5389.1 >prot_H-elongata_contig19398.5389.1 ID=prot_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp SLEHRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVGAACGGRKKEWEback to top mRNA from alignment at H-elongata_contig19398:6505..6948- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig19398.5389.1 ID=mRNA_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig19398:6505..6948- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig19398:6505..6948- >mRNA_H-elongata_contig19398.5389.1 ID=mRNA_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig19398:6505..6948- (Himanthalia elongata Himel1 dioecious)back to top |