mRNA_H-elongata_contig19398.5389.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig19398.5389.1
Unique NamemRNA_H-elongata_contig19398.5389.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: D6C783_HELAN (Copia-like retrotransposon n=2 Tax=Helianthus annuus TaxID=4232 RepID=D6C783_HELAN)

HSP 1 Score: 55.8 bits (133), Expect = 3.320e-6
Identity = 46/148 (31.08%), Postives = 67/148 (45.27%), Query Frame = 1
Query:   10 HRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVG-------------AACGGRKKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLI 414
            H  R+C +R  + G  + + +A  V +V  + A VG              AC G    W  DSGAT H+   R    TY     G  +  ADG+ + V G G + ++  + G     V + DV HVPGI++ L+S  K      KL+I
Sbjct:  266 HYARECSQR--KSGSTVGSTSAIDVEKVTNLVANVGLGEVNMLSQYTRIVACRG----WFLDSGATVHVCGNRGSFLTYAPVPQGTVVVCADGHRVEVRGKGTVRLNF-RDGQV---VTLQDVLHVPGITKGLVSADKFDRNGYKLVI 403          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A1S4DER3_TOBAC (uncharacterized protein LOC107828953 n=2 Tax=Nicotiana TaxID=4085 RepID=A0A1S4DER3_TOBAC)

HSP 1 Score: 55.5 bits (132), Expect = 3.820e-6
Identity = 37/128 (28.91%), Postives = 69/128 (53.91%), Query Frame = 1
Query:    1 SLEHRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVGAACG--GRKKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLST 378
            ++ H+  +C  +  +K    AN+      E+  + AM+ + C   G  +EW  DSGAT H+   +   ++Y    P  T+ +A+  T  ++G G+I + +     ++K V ++DV HVPG+ ++L+ST
Sbjct:  274 NVGHKAAECRAQKKDKKKSQANMIEKN-DEIDDLCAMI-SECNLVGNPREWWIDSGATRHICANKELFTSYVPVGPNETVFMANFATAKIEGTGKITLKMT----SSKIVTLNDVLHVPGMRKNLVST 395          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A3C414_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3C414_HIBSY)

HSP 1 Score: 53.5 bits (127), Expect = 2.060e-5
Identity = 29/100 (29.00%), Postives = 50/100 (50.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+I   +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  228 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKI---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVGQLTSSGHYVLFGPQDMKV 324          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: B2BXI0_ARALL (Gag-pol polymerase (Fragment) n=1 Tax=Arabidopsis lyrata subsp. lyrata TaxID=81972 RepID=B2BXI0_ARALL)

HSP 1 Score: 53.1 bits (126), Expect = 2.790e-5
Identity = 30/99 (30.30%), Postives = 51/99 (51.52%), Query Frame = 1
Query:  145 WESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAVLG 441
            W  DSGAT H+   R    TY+    G  + + + +T P+ G G++ ++      + K + ++DV HVPGI ++L+S    + +     +Y  DK VL 
Sbjct:  267 WWIDSGATIHVCKDRGWFKTYEPVQDGSVLYMGNESTAPILGRGKVVLEFS----SGKTLDLNDVIHVPGIRKNLVSG-SVLNKCGFKQVYESDKYVLS 360          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2ZIH7_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2ZIH7_HIBSY)

HSP 1 Score: 53.1 bits (126), Expect = 2.840e-5
Identity = 29/100 (29.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPGI ++LLS  +       +L   +D  V
Sbjct:  295 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGIKKNLLSMAQLTSSGHYVLFGPQDVKV 391          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X170_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X170_HIBSY)

HSP 1 Score: 52.8 bits (125), Expect = 3.860e-5
Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  317 KNDWIVDSGCSNHMTGNKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 413          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2YQM6_HIBSY (PLAC8 family protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2YQM6_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 5.180e-5
Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  246 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 342          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X3R2_HIBSY (Tir-nbs resistance protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X3R2_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 5.190e-5
Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  277 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 373          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A3A2M5_HIBSY (Integrase catalytic domain-containing protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3A2M5_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 5.220e-5
Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  169 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 265          
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Match: A0A6A2X327_HIBSY (Uncharacterized protein n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2X327_HIBSY)

HSP 1 Score: 52.4 bits (124), Expect = 5.240e-5
Identity = 28/100 (28.00%), Postives = 49/100 (49.00%), Query Frame = 1
Query:  136 KKEWESDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQPGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAV 435
            K +W  DSG + HM+  +  +    +   G  +  AD + LP+   G+    +  P + T +V++ DV HVPG+ ++LLS  +       +L   +D  V
Sbjct:  247 KNDWIVDSGCSNHMTGDKQKLQNLSEYNGGRVVVTADNSRLPITHIGKT---IVTPRYNTNQVQLQDVYHVPGMKKNLLSVAQLTSSGHYVLFGPQDVKV 343          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig19398.5389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D6C783_HELAN3.320e-631.08Copia-like retrotransposon n=2 Tax=Helianthus annu... [more]
A0A1S4DER3_TOBAC3.820e-628.91uncharacterized protein LOC107828953 n=2 Tax=Nicot... [more]
A0A6A3C414_HIBSY2.060e-529.00PLAC8 family protein n=1 Tax=Hibiscus syriacus Tax... [more]
B2BXI0_ARALL2.790e-530.30Gag-pol polymerase (Fragment) n=1 Tax=Arabidopsis ... [more]
A0A6A2ZIH7_HIBSY2.840e-529.00Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A2X170_HIBSY3.860e-528.00Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]
A0A6A2YQM6_HIBSY5.180e-528.00PLAC8 family protein n=1 Tax=Hibiscus syriacus Tax... [more]
A0A6A2X3R2_HIBSY5.190e-528.00Tir-nbs resistance protein n=1 Tax=Hibiscus syriac... [more]
A0A6A3A2M5_HIBSY5.220e-528.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A2X327_HIBSY5.240e-528.00Uncharacterized protein n=1 Tax=Hibiscus syriacus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig19398contigH-elongata_contig19398:6505..6948 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.2
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog164328.Phyra85925
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size444
Cds size444
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.7948053-CDS-H-elongata_contig19398:6504..69481622930104.7948053-CDS-H-elongata_contig19398:6504..6948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19398 6505..6948 -
1691679281.889148-CDS-H-elongata_contig19398:6504..69481691679281.889148-CDS-H-elongata_contig19398:6504..6948Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig19398 6505..6948 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig19398.5389.1prot_H-elongata_contig19398.5389.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig19398 6505..6948 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig19398.5389.1

>prot_H-elongata_contig19398.5389.1 ID=prot_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=148bp
SLEHRTRDCGERGAEKGVMLANLTAPAVPEVGTIAAMVGAACGGRKKEWE
SDSGATFHMSHTRAGMSTYKKALPGMTIEIADGNTLPVDGFGRIEMDLDQ
PGHTTKRVKMDDVAHVPGISRSLLSTLKAVEQWEKLLIYSRDKAVLGF
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mRNA from alignment at H-elongata_contig19398:6505..6948-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig19398.5389.1 ID=mRNA_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=444bp|location=Sequence derived from alignment at H-elongata_contig19398:6505..6948- (Himanthalia elongata Himel1 dioecious)
AGCCTTGAGCACCGGACACGAGACTGTGGGGAGCGCGGAGCTGAAAAGGG CGTAATGTTGGCAAACCTGACTGCGCCGGCAGTCCCCGAGGTGGGGACGA TAGCGGCAATGGTGGGAGCAGCTTGTGGCGGTAGGAAGAAGGAATGGGAA TCGGACTCAGGCGCCACATTCCACATGTCACACACCCGGGCCGGAATGTC TACGTACAAGAAGGCGCTGCCGGGGATGACCATTGAGATCGCCGACGGGA ACACTCTACCGGTGGACGGGTTCGGAAGAATTGAGATGGATCTGGACCAA CCGGGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGCGCATGTGCC AGGGATTTCTCGGAGCCTGCTATCTACCCTCAAAGCAGTGGAGCAATGGG AGAAACTACTAATATACTCCAGGGACAAAGCCGTTTTGGGGTTC
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Coding sequence (CDS) from alignment at H-elongata_contig19398:6505..6948-

>mRNA_H-elongata_contig19398.5389.1 ID=mRNA_H-elongata_contig19398.5389.1|Name=mRNA_H-elongata_contig19398.5389.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=888bp|location=Sequence derived from alignment at H-elongata_contig19398:6505..6948- (Himanthalia elongata Himel1 dioecious)
AGCCTTGAGCACCGGACACGAGACTGTGGGGAGCGCGGAGCTGAAAAGGG
CGTAATGTTGGCAAACCTGACTGCGCCGGCAGTCCCCGAGGTGGGGACGA
TAGCGGCAATGGTGGGAGCAGCTTGTGGCGGTAGGAAGAAGGAATGGGAA
TCGGACTCAGGCGCCACATTCCACATGTCACACACCCGGGCCGGAATGTC
TACGTACAAGAAGGCGCTGCCGGGGATGACCATTGAGATCGCCGACGGGA
ACACTCTACCGGTGGACGGGTTCGGAAGAATTGAGATGGATCTGGACCAA
CCGGGTCACACAACCAAGAGGGTGAAGATGGACGATGTTGCGCATGTGCC
AGGGATTTCTCGGAGCCTGCTATCTACCCTCAAAGCAGTGGAGCAATGGG
AGAAACTACTAATATACTCCAGGGACAAAGCCGTTTTGGGGTTCAGCCTT
GAGCACCGGACACGAGACTGTGGGGAGCGCGGAGCTGAAAAGGGCGTAAT
GTTGGCAAACCTGACTGCGCCGGCAGTCCCCGAGGTGGGGACGATAGCGG
CAATGGTGGGAGCAGCTTGTGGCGGTAGGAAGAAGGAATGGGAATCGGAC
TCAGGCGCCACATTCCACATGTCACACACCCGGGCCGGAATGTCTACGTA
CAAGAAGGCGCTGCCGGGGATGACCATTGAGATCGCCGACGGGAACACTC
TACCGGTGGACGGGTTCGGAAGAATTGAGATGGATCTGGACCAACCGGGT
CACACAACCAAGAGGGTGAAGATGGACGATGTTGCGCATGTGCCAGGGAT
TTCTCGGAGCCTGCTATCTACCCTCAAAGCAGTGGAGCAATGGGAGAAAC
TACTAATATACTCCAGGGACAAAGCCGTTTTGGGGTTC
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