mRNA_H-elongata_contig193959.5388.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193959.5388.1
Unique NamemRNA_H-elongata_contig193959.5388.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: D8LQ23_ECTSI (Exostosin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ23_ECTSI)

HSP 1 Score: 261 bits (667), Expect = 8.080e-78
Identity = 127/210 (60.48%), Postives = 152/210 (72.38%), Query Frame = 1
Query:    1 RVSVYVYDN-QALDFSDLIDCYRETH-GKSPWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCG-GRLVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
            +VSV+VYD    LD S L+ CYR+   G SPWQDER D AQDMGEIWLH+A+L HPWRV  PEEA +FYVP+YPVLS KL      +C G TH+E +  +V YL   SVYF+RFGG+DH +VCAWW C++   P  RMLLRR V+GINE +  W  WGCG  ++VTIPYTASS++TT E +GG   E RDIPF FVGT+R R ERQNL V
Sbjct:  156 KVSVFVYDGVPELDHSWLVPCYRQVRDGVSPWQDERADMAQDMGEIWLHRAMLAHPWRVANPEEADLFYVPMYPVLSTKL---GNNRCGGKTHDELINTSVEYLALSSVYFRRFGGADHTLVCAWWNCKSALGPKPRMLLRRTVVGINEKMLEWTRWGCGLDKMVTIPYTASSVLTTSEMIGGRAAEDRDIPFFFVGTARGRPERQNLDV 362          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5KWD0_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWD0_9PHAE)

HSP 1 Score: 207 bits (526), Expect = 6.270e-63
Identity = 94/159 (59.12%), Postives = 119/159 (74.84%), Query Frame = 1
Query:  148 ILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCG-GRLVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
            +L HPWRVL+PEEA +FYVPIYPVLS+KL     ++C GLTHNE M  +V YL + S +F RFGG+DH+++CAWWKC     P  RMLLRRAV+GINE +  W  WGCG  ++VT+PYTA+S++TT + +GG   E RDIPF FVGT+R R ER+NL V
Sbjct:    1 MLSHPWRVLDPEEADLFYVPIYPVLSFKLA---TSRCGGLTHNELMDASVEYLSSSSPFFNRFGGADHILMCAWWKCGEALGPKHRMLLRRAVVGINERLLRWTRWGCGRSKMVTVPYTANSVLTTSDMIGGRTAEDRDIPFFFVGTARHRPERKNLDV 156          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5LR87_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LR87_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 2.110e-60
Identity = 93/165 (56.36%), Postives = 118/165 (71.52%), Query Frame = 1
Query:  148 ILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVT------QCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGGR-LVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
            +L HPWRVL+PEEA +FYVPIY  LS KL E +        +C GLTH+E M  +V YL + S++F RFGG+DH+++CAWW CRN   P  RMLLRR V+GINE +  W  WGCG R +VT+PYTASS++ T + +GG   E+RDIPF FVGT+R R ER+NL V
Sbjct:    1 MLFHPWRVLDPEEADLFYVPIYSALSSKLTEHSTIHLELRRRCGGLTHDELMDASVEYLSSSSLFFNRFGGADHILMCAWWGCRNGLGPKHRMLLRRTVVGINERVFKWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 165          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5JMN7_9PHAE (Exostosin domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMN7_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 3.060e-43
Identity = 74/127 (58.27%), Postives = 93/127 (73.23%), Query Frame = 1
Query:  244 NVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGGR-LVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQERQNLKV 621
            N  QC GLTH+E M  +V YL + S++F RFGG+DHV++CAWW CRN   P  RMLLRR V+GINE +  W  WGCG R +VT+PYTASS++ T + +GG   E+RDIPF FVGT+R R ER+NL V
Sbjct:    2 NEPQCGGLTHDELMDASVDYLSSSSLFFNRFGGADHVLMCAWWGCRNGLGPKHRMLLRRTVVGINERVFLWTRWGCGPRKMVTVPYTASSVLATSDMIGGRTAEARDIPFFFVGTARGRPERENLDV 128          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5KVI3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 2.410e-11
Identity = 29/50 (58.00%), Postives = 39/50 (78.00%), Query Frame = 1
Query:    1 RVSVYVYDN-QALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKA 147
            RV+V+VY+    LD  +L+ CYR+ HG +PWQDER D AQDMGEIW+H++
Sbjct:  155 RVAVFVYEGVPELDHMELVQCYRDVHGVAPWQDERFDMAQDMGEIWMHRS 204          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A8J2EUU5_9DINO (Hypothetical protein (Fragment) n=1 Tax=Amoebophrya sp. A120 TaxID=2202890 RepID=A0A8J2EUU5_9DINO)

HSP 1 Score: 65.1 bits (157), Expect = 7.810e-9
Identity = 61/226 (26.99%), Postives = 99/226 (43.81%), Query Frame = 1
Query:    1 RVSVYVYDNQALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVT---QCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTP----------W----QRMLLRRAVLGINE-------AIKAWANWGCGGRLVTIPY--TASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQ 600
            RV  +VYDN  L  ++             W    V T +D  ++ L +A+ +HPWR   PE+A +F VP   + S +L E   T   + RG  H+ R + A+ +L T S +F+R  G DH+++   W    + T           W    + +L R  V+ ++          KAW  W     L ++P+  T  S++T  E      P+ + +P  F    + RQ
Sbjct:  203 RVPFFVYDNHELTMNN-------------WTHVCV-TERDCADVSLLQALRKHPWRTASPEDAEIFVVPTQFLQSRQLDEKRKTGGGKNRG--HDRRTRTALNWLFTQSPWFRRRQGRDHLLLANPWYFSRLTTDERDKCIPKDAWPALSETILTREEVVHMSSWENSFKRGPKAW--WRHPQNLFSVPWESTKRSVVTPIEMY----PDVQVVPAEFTPAWKNRQ 406          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A6H5L8I0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8I0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.080e-7
Identity = 25/52 (48.08%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 RVSVYVYDN-QALDFSDLIDCYRETH-GKSPWQDERVDTAQDMGEIWLHKAI 150
            +V+++VY+    LD ++L+ CYR  H G +PWQDER D A++MGEIW+H+ +
Sbjct:  145 KVAIFVYEGVPELDHTELVQCYRSGHRGVAPWQDERNDMAENMGEIWMHRYV 196          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A7S3ZW87_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZW87_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 9.780e-7
Identity = 45/153 (29.41%), Postives = 68/153 (44.44%), Query Frame = 1
Query:   85 PWQDERVDTAQDMGEIWLHKAILEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWK---CRNVFTPWQRMLLRRAVLGINEAIKAWANWGCGG--------RLVTIPYTASS 510
            P Q      A+++ E+W+H+A+L    R  +PE AS+F+VP Y  LS            G  H+ER+   +  L + S +FQR  G+DHV   +       R +  P     L ++  G+ E   AW     GG        R+V  PY   +
Sbjct:   71 PQQRRHYKIAEELVEVWVHRALLNDKRRTTDPEAASLFFVPAYLSLS--------KNSDGQGHDERLSALIEELRS-SKWFQRHRGADHVFGYSSINPGVARQLLFPKLHAGLEQSYFGVFEMNPAWV----GGDRKEETLRRMVPAPYVVDA 210          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: A0A7S3V9G1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V9G1_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.810e-6
Identity = 36/112 (32.14%), Postives = 56/112 (50.00%), Query Frame = 1
Query:  115 QDMGEIWLHKAILEHPWRVLEPEEASVFYVP--IYPVLSYKLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEA 444
            Q  G++   ++ L+HP RVL PE+A +F VP  + P +   + E            + + KA   +L  S +FQR  G+DH+   A WK  N  T +  +L R  V+  +EA
Sbjct:  130 QQHGDVHFIRSALQHPMRVLNPEDAKLFVVPTLLTPTIMRVIYEPE--SALSAKARKHLLKA-NEVLRASPWFQRSDGADHIAPIAMWKTDNTITEFFELLTRCNVVQFHEA 238          
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Match: UPI001CC33B42 (probable arabinosyltransferase ARAD1 n=1 Tax=Telopea speciosissima TaxID=54955 RepID=UPI001CC33B42)

HSP 1 Score: 55.5 bits (132), Expect = 1.520e-5
Identity = 43/134 (32.09%), Postives = 63/134 (47.01%), Query Frame = 1
Query:    4 VSVYVYDNQALDFSDLIDCYRETHG--KSPWQDE---RVDTAQDMGEIWLHKAILEHPW------RVLEPEEASVFYVPIYPVLSY---KLLEANVTQCRGLTHNERMKKAVGYLLTDSVYFQRFGGSDHVIVC 363
            V VY+YD        +I+ Y       KSP +D+   +    Q   E WL K +L          RVL+PEEA +FYVP +  LS     +    V    G+  +E M++++   L   VY++R  G DHV +C
Sbjct:  102 VKVYLYDLPRKFTYGVIESYLMARDSLKSPVEDDSTLKYPGHQHSAEWWLFKDLLREDRYGSPVIRVLDPEEADLFYVPFFSSLSLVVNPIRPGGVVGNAGVYSDEEMQESLMDWLEGQVYWKRSLGLDHVFIC 235          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193959.5388.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
D8LQ23_ECTSI8.080e-7860.48Exostosin domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5KWD0_9PHAE6.270e-6359.12Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5LR87_9PHAE2.110e-6056.36Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JMN7_9PHAE3.060e-4358.27Exostosin domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KVI3_9PHAE2.410e-1158.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8J2EUU5_9DINO7.810e-926.99Hypothetical protein (Fragment) n=1 Tax=Amoebophry... [more]
A0A6H5L8I0_9PHAE2.080e-748.08Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A7S3ZW87_9STRA9.780e-729.41Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3V9G1_9STRA2.810e-632.14Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
UPI001CC33B421.520e-532.09probable arabinosyltransferase ARAD1 n=1 Tax=Telop... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193959contigH-elongata_contig193959:25..645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score266.5
Seed ortholog evalue1e-68
Seed eggNOG ortholog2880.D8LQ23
EggNOG free text desc.macromolecule glycosylation
EggNOG OGsKOG1021@1,KOG1021@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size621
Cds size621
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.7462358-CDS-H-elongata_contig193959:24..6451622930104.7462358-CDS-H-elongata_contig193959:24..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193959 25..645 -
1691679281.8778772-CDS-H-elongata_contig193959:24..6451691679281.8778772-CDS-H-elongata_contig193959:24..645Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193959 25..645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193959.5388.1prot_H-elongata_contig193959.5388.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193959 25..645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193959.5388.1

>prot_H-elongata_contig193959.5388.1 ID=prot_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=207bp
RVSVYVYDNQALDFSDLIDCYRETHGKSPWQDERVDTAQDMGEIWLHKAI
LEHPWRVLEPEEASVFYVPIYPVLSYKLLEANVTQCRGLTHNERMKKAVG
YLLTDSVYFQRFGGSDHVIVCAWWKCRNVFTPWQRMLLRRAVLGINEAIK
AWANWGCGGRLVTIPYTASSIITTPEFLGGSDPESRDIPFLFVGTSRKRQ
ERQNLKV
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mRNA from alignment at H-elongata_contig193959:25..645-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193959.5388.1 ID=mRNA_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=621bp|location=Sequence derived from alignment at H-elongata_contig193959:25..645- (Himanthalia elongata Himel1 dioecious)
AGGGTCAGCGTGTACGTCTATGACAACCAGGCATTAGACTTTTCGGACCT TATTGACTGCTACCGTGAAACGCACGGTAAGTCGCCCTGGCAAGATGAAC GTGTCGATACGGCCCAAGACATGGGGGAAATCTGGCTCCACAAGGCCATA CTGGAGCATCCGTGGCGGGTACTCGAGCCGGAAGAAGCTAGCGTGTTTTA CGTTCCAATCTATCCGGTCCTGAGCTATAAGCTGCTTGAGGCGAACGTCA CCCAGTGCCGTGGACTAACTCACAATGAGCGAATGAAGAAAGCCGTGGGC TACCTGCTCACCGACAGCGTGTACTTCCAGCGCTTTGGTGGGAGTGATCA TGTGATTGTGTGTGCCTGGTGGAAATGCCGTAACGTGTTCACTCCATGGC AGAGGATGCTGCTGAGGAGAGCTGTTCTCGGCATCAACGAGGCAATCAAA GCGTGGGCAAACTGGGGCTGCGGGGGGCGTTTGGTCACTATCCCGTACAC AGCGAGCAGCATCATCACCACCCCGGAGTTTTTGGGTGGGTCTGATCCCG AAAGCAGAGACATCCCGTTCCTCTTCGTCGGGACATCACGGAAACGCCAG GAGAGACAAAATTTGAAGGTG
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Coding sequence (CDS) from alignment at H-elongata_contig193959:25..645-

>mRNA_H-elongata_contig193959.5388.1 ID=mRNA_H-elongata_contig193959.5388.1|Name=mRNA_H-elongata_contig193959.5388.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1242bp|location=Sequence derived from alignment at H-elongata_contig193959:25..645- (Himanthalia elongata Himel1 dioecious)
AGGGTCAGCGTGTACGTCTATGACAACCAGGCATTAGACTTTTCGGACCT
TATTGACTGCTACCGTGAAACGCACGGTAAGTCGCCCTGGCAAGATGAAC
GTGTCGATACGGCCCAAGACATGGGGGAAATCTGGCTCCACAAGGCCATA
CTGGAGCATCCGTGGCGGGTACTCGAGCCGGAAGAAGCTAGCGTGTTTTA
CGTTCCAATCTATCCGGTCCTGAGCTATAAGCTGCTTGAGGCGAACGTCA
CCCAGTGCCGTGGACTAACTCACAATGAGCGAATGAAGAAAGCCGTGGGC
TACCTGCTCACCGACAGCGTGTACTTCCAGCGCTTTGGTGGGAGTGATCA
TGTGATTGTGTGTGCCTGGTGGAAATGCCGTAACGTGTTCACTCCATGGC
AGAGGATGCTGCTGAGGAGAGCTGTTCTCGGCATCAACGAGGCAATCAAA
GCGTGGGCAAACTGGGGCTGCGGGGGGCGTTTGGTCACTATCCCGTACAC
AGCGAGCAGCATCATCACCACCCCGGAGTTTTTGGGTGGGTCTGATCCCG
AAAGCAGAGACATCCCGTTCCTCTTCGTCGGGACATCACGGAAACGCCAG
GAGAGACAAAATTTGAAGGTGAGGGTCAGCGTGTACGTCTATGACAACCA
GGCATTAGACTTTTCGGACCTTATTGACTGCTACCGTGAAACGCACGGTA
AGTCGCCCTGGCAAGATGAACGTGTCGATACGGCCCAAGACATGGGGGAA
ATCTGGCTCCACAAGGCCATACTGGAGCATCCGTGGCGGGTACTCGAGCC
GGAAGAAGCTAGCGTGTTTTACGTTCCAATCTATCCGGTCCTGAGCTATA
AGCTGCTTGAGGCGAACGTCACCCAGTGCCGTGGACTAACTCACAATGAG
CGAATGAAGAAAGCCGTGGGCTACCTGCTCACCGACAGCGTGTACTTCCA
GCGCTTTGGTGGGAGTGATCATGTGATTGTGTGTGCCTGGTGGAAATGCC
GTAACGTGTTCACTCCATGGCAGAGGATGCTGCTGAGGAGAGCTGTTCTC
GGCATCAACGAGGCAATCAAAGCGTGGGCAAACTGGGGCTGCGGGGGGCG
TTTGGTCACTATCCCGTACACAGCGAGCAGCATCATCACCACCCCGGAGT
TTTTGGGTGGGTCTGATCCCGAAAGCAGAGACATCCCGTTCCTCTTCGTC
GGGACATCACGGAAACGCCAGGAGAGACAAAATTTGAAGGTG
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