mRNA_H-elongata_contig193885.5384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig193885.5384.1
Unique NamemRNA_H-elongata_contig193885.5384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig193885.5384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig193885contigH-elongata_contig193885:483..1085 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size603
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig193885.5384.1prot_H-elongata_contig193885.5384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig193885 695..1036 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.1605308-UTR-H-elongata_contig193885:482..6941622930104.1605308-UTR-H-elongata_contig193885:482..694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig193885 483..694 +
1691679281.6206963-UTR-H-elongata_contig193885:482..6941691679281.6206963-UTR-H-elongata_contig193885:482..694Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig193885 483..694 +
1622930104.2029707-UTR-H-elongata_contig193885:1036..10851622930104.2029707-UTR-H-elongata_contig193885:1036..1085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig193885 1037..1085 +
1691679281.6382358-UTR-H-elongata_contig193885:1036..10851691679281.6382358-UTR-H-elongata_contig193885:1036..1085Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig193885 1037..1085 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930104.1832843-CDS-H-elongata_contig193885:694..10361622930104.1832843-CDS-H-elongata_contig193885:694..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193885 695..1036 +
1691679281.6291647-CDS-H-elongata_contig193885:694..10361691679281.6291647-CDS-H-elongata_contig193885:694..1036Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig193885 695..1036 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig193885.5384.1

>prot_H-elongata_contig193885.5384.1 ID=prot_H-elongata_contig193885.5384.1|Name=mRNA_H-elongata_contig193885.5384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=114bp
MFGGGERRGLQVSYYEIGDGTWSEGAGEGDRGRGGYSIKIIIMFEALLML
RPSTAFSSPPSSFSRGFVMFSFSLIFYFLFFFHYFYPSCCVGAVTGRVEE
ARGGELGSYLNCQ*
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mRNA from alignment at H-elongata_contig193885:483..1085+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig193885.5384.1 ID=mRNA_H-elongata_contig193885.5384.1|Name=mRNA_H-elongata_contig193885.5384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=603bp|location=Sequence derived from alignment at H-elongata_contig193885:483..1085+ (Himanthalia elongata Himel1 dioecious)
TACGCAACCTGATTTGAAGGGCGCAATTTTGTCAACAAAATACGCGCTTC
TGTTTTCGTCCGTAGAAAGGCGCGTGACGCTGCAGGGTACAGCCGCGCCG
GGCGCATCTTCTACCTGACGTGAAACGACGGCCTTCGACCATCGCACGTG
ACGCAACGAGTTTAATACAAAATTCTGCGCGAAATAGTCAGGGGAGTCGA
TAATTTGGAGGGATGTTTGGGGGCGGGGAGAGAAGGGGGTTACAAGTCTC
ATACTATGAAATAGGCGATGGGACGTGGTCCGAGGGAGCAGGGGAGGGAG
ATAGAGGAAGAGGCGGGTATAGCATCAAAATAATTATCATGTTTGAAGCG
TTGCTGATGCTCCGGCCGTCGACCGCGTTCTCCTCACCTCCCTCTTCCTT
CTCGAGAGGTTTTGTAATGTTTAGCTTTTCCCTTATTTTTTATTTTTTAT
TTTTTTTTCATTATTTTTATCCGAGCTGTTGCGTCGGGGCGGTCACCGGT
AGGGTGGAGGAGGCGAGGGGTGGCGAGCTTGGAAGCTATCTCAATTGCCA
ATAGCCAGTGTGAGACTCGATAGGGGCAGGCCGAACCCTAGGAGTAAGAG
AAC
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Coding sequence (CDS) from alignment at H-elongata_contig193885:483..1085+

>mRNA_H-elongata_contig193885.5384.1 ID=mRNA_H-elongata_contig193885.5384.1|Name=mRNA_H-elongata_contig193885.5384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=684bp|location=Sequence derived from alignment at H-elongata_contig193885:483..1085+ (Himanthalia elongata Himel1 dioecious)
ATGTTTGGGGGCGGGGAGAGAAGGGGGTTACAAGTCTCATACTATGAAAT
AGGCGATGGGACGTGGTCCGAGGGAGCAGGGGAGGGAGATAGAGGAAGAG
GCGGGTATAGCATCAAAATAATTATCATGTTTGAAGCGTTGCTGATGCTC
CGGCCGTCGACCGCGTTCTCCTCACCTCCCTCTTCCTTCTCGAGAGGTTT
TGTAATGTTTAGCTTTTCCCTTATTTTTTATTTTTTATTTTTTTTTCATT
ATTTTTATCCGAGCTGTTGCGTCGGGGCGGTCACCGGTAGGGTGGAGGAG
GCGAGGGGTGGCGAGCTTGGAAGCTATCTCAATTGCCAATAGATGTTTGG
GGGCGGGGAGAGAAGGGGGTTACAAGTCTCATACTATGAAATAGGCGATG
GGACGTGGTCCGAGGGAGCAGGGGAGGGAGATAGAGGAAGAGGCGGGTAT
AGCATCAAAATAATTATCATGTTTGAAGCGTTGCTGATGCTCCGGCCGTC
GACCGCGTTCTCCTCACCTCCCTCTTCCTTCTCGAGAGGTTTTGTAATGT
TTAGCTTTTCCCTTATTTTTTATTTTTTATTTTTTTTTCATTATTTTTAT
CCGAGCTGTTGCGTCGGGGCGGTCACCGGTAGGGTGGAGGAGGCGAGGGG
TGGCGAGCTTGGAAGCTATCTCAATTGCCAATAG
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